Array 1 12390-10492 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDSZ01000009.1 Salmonella enterica subsp. enterica serovar Infantis strain inss15 scaffold_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12389 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 12328 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 12267 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 12206 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 12144 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 12083 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 12022 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 11961 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 11900 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 11839 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 11778 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 11717 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 11656 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 11595 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 11534 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 11473 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 11412 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 11351 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 11290 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 11229 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 11171 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 11110 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 11049 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 10988 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 10927 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 10866 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 10805 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 10744 29 100.0 11 ............................. CGGCCAGCCAT Deletion [10705] 10704 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 10643 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 10582 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 10521 29 93.1 0 A...........T................ | A [10494] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29860-28672 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDSZ01000009.1 Salmonella enterica subsp. enterica serovar Infantis strain inss15 scaffold_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 29859 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 29797 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 29736 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 29675 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 29614 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 29553 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 29492 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 29431 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 29370 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 29309 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 29248 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 29187 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 29126 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 29065 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 29004 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 28943 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 28882 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 28821 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 28760 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 28699 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //