Array 1 100266-100842 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHTJ01000011.1 Salmonella enterica subsp. enterica serovar Weslaco str. 247K S_Weslaco_mirahybrid2_c11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 100266 29 100.0 32 ............................. TCTGCTTACCCGCTACTGGCTATAGCGTATCC 100327 29 100.0 32 ............................. AACCACGCTGCACTACGGGCAGCATACGTATC 100388 29 100.0 32 ............................. CAGGTATTCGAGGTTTATCCAGGCAATTCTAT 100449 29 100.0 32 ............................. GGTGAGAAAATCGGCGTCGGTGTGACCGGTAC 100510 29 100.0 32 ............................. CGAATGCAGATGCCTCCCGTACTGCCGCCGGC 100571 29 96.6 32 ............................C GAATCACCCAGCGTGAGGCTCTCGATTTGGGC 100632 29 100.0 32 ............................. CCGAATAACAAATAGGATAAGGCCGACAATTA 100693 29 100.0 32 ............................. TTTTTGGGCTTGCTTGCTACATAATATGTCTA 100754 29 100.0 32 ............................. CGATCGACGCGGTTCCATCCGTAAAAACTAAT 100815 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.0 32 GTGTTCCCCGCACCAGCGGGGATAAACCG # Left flank : TGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGTTGCCGTCTGTGACTCATCCATTACCTCGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTATATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAATAAAAAATCATTCTATTAACTTTTTTCATTAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTTATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTGGTTTATAAACAAAGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGTTGCAACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAACGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTCGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCTCTGATGGCAGTTTTATGCAAAACACGTCGGCGAGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTCGCATGGTCATTACGATCATTGCGACGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCTGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGAACTATTCATGCTACCGAATGATGTACACGCGTGGCCCCCTACCTACCGATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121387-123185 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHTJ01000011.1 Salmonella enterica subsp. enterica serovar Weslaco str. 247K S_Weslaco_mirahybrid2_c11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 121387 29 96.6 32 ..T.......................... GATGGCTGAGTTACTAAACGAACAATATCCAG 121448 29 96.6 32 ..T.......................... ATATCGATGGCGAGGGAGATGGTTTTTCCTTG 121509 29 96.6 32 ..T.......................... TATGTTGCATCAGGTAGTGAATGGTATCTGTC 121570 29 96.6 32 ..T.......................... CGTATAAGCAGCTTTTGTCATTTCAGCAGCGC 121631 29 96.6 32 ..T.......................... GTGGATACATAGGCGGAAGAATAAGGAATGGG 121692 29 96.6 32 ..T.......................... CTCACGATCTGCATCCTGATAACCCCGGACAG 121753 29 96.6 33 ..T.......................... CCGGTAATTTCGTTAACCGTATGCGGCCACGCC 121815 29 96.6 32 ..T.......................... CAGGTACTGATATCCACTCCATACGCCTGCAT 121876 29 96.6 32 ..T.......................... TTATTGCTATGGTGATGTACTGTCATTCGACC 121937 29 96.6 32 ..T.......................... TAATAATCCTTGCCGGGTTTGATACCGCTACT 121998 29 93.1 32 ..T.........................A TGATCGCACAGGCCCAGTTTGGCGATGACAGC 122059 29 96.6 32 ..T.......................... GTTCCGGACTCAGTGTTGGCACCACTGGTGTT 122120 29 96.6 32 ..T.......................... GGGTAGCGATTTGATGTACCTGACCTGCTGCG 122181 29 96.6 32 ..T.......................... GCTGGAACAGTTTTATTGCGCTATTAACAGGG 122242 29 100.0 32 ............................. CTAGTTCATTCAGATAAACGAAATCAATACAT 122303 29 100.0 32 ............................. CTCGCGAAGCCGCGCAACGTAAGGCGCAATCC 122364 29 100.0 32 ............................. AAAGTACAGCTCGCCCACTGGCGGGTTTACCT 122425 29 100.0 32 ............................. TGCGTATGAGAACTGTATTTGAGCAGGCAGCT 122486 29 100.0 32 ............................. TAACGAGCTCAGTTTTTAGCCCATTACCGCAA 122547 29 100.0 32 ............................. CACTTCGTTTTGGGGTACATAGTTTGCCAGCA 122608 29 96.6 32 ............................T GCGTCGAGTGTTCAGTTGCCTGACTGGCTGTC 122669 29 100.0 31 ............................. TTCAGGGTTCTTTATTTTCCCCCCATAGCGC 122729 29 100.0 32 ............................. GATGATGTCCTCAGTATCATCAAAAATATAAG 122790 29 100.0 32 ............................. GTTGGCTGTAGTGTTGCAACGCTTGAGGAGGC 122851 29 100.0 32 ............................. CTCGATGATGAGTTTGTCTTTGCTCTCCATCG 122912 29 100.0 32 ............................. TCTCGCAACGCGTGACACAGGCAGGAGACTGG 122973 29 100.0 32 ............................. GTGTCGCGGTTGTAGCGGTTGCGCAGCTTATC 123034 29 100.0 32 ............................. CTGACCATGGTGAATTTTTTGATACACAGAGC 123095 29 93.1 32 ................T...A........ ACGAACTGACAGTTGAACAGTGCCAGGTATTA 123156 29 93.1 0 ...........AT................ | A [123183] ========== ====== ====== ====== ============================= ================================= ================== 30 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCATCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGATTTCCGTTCTGACAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTATCGTTTTTACCTGTTTAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTAGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGATAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATACTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTTTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTTTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //