Array 1 67355-67618 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOUO01000011.1 Ectothiorhodospira mobilis strain DSM 4180, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 67355 37 94.6 39 .T................T.................. GCGATATTCAGGACCGATTAAGAAACATTGTGAAAAAAC 67431 37 100.0 39 ..................................... GCGGCGCTGGAAACCAGGGCGATATTGTTCATCCAGTTA 67507 37 100.0 38 ..................................... CTAACCTCATGTTTTCCGTAATTCTCTTTATTTCATTA 67582 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 4 37 98.7 39 GCTTCAATGAGGCCCCGGCGGTAAAGGCCGGGGAAAC # Left flank : AGGGATCCGAGCGTTGGATCGGATTACGCGGCTATGGGAACGAGATGGTGGTGAGTGGCAAATACTTTATGAAGGATCAGGTACAGTGAAGGATCTGCCGCAATCTCCCTATCTAGGGCGAGCACGCATATGGACCTCTGTTACACCCTACCTACATCCATGGCATATCAAAAAGAACTTTGGTGTAGCCGAACAGATTGCCCGAGAGTGCCGTCAAAGAGAACTGCCTGAGCCAGTTGAAGTAAAAAAGGTAGAGCGCATTATAGTGGGAGGAAAGAAACGTCGGCCTGTCCATTTTCACCGATTCCGGTCTACGCACAAAAGACTGACCCAGCCCGACACTCGCGGTCATTTTGTACAAATTATTTTCGCTAAGCCAGTGGATGGACCCTTAGCGCTAGGTTTCGGGTGCCATTATGGCTTGGGAGTGTTTTCTCCTGGCGATGAAAAAGAATGAAAGTTCCATTCGAAGCCCGGGCTGCCGGGTATCGGGAGGCCGG # Right flank : CCGGACGGCCCAGGAGGCCGCCCGGGCCGGTGAGGCCTACGCTTCAATGAGGCCCCCCCACTGTCAGACTAGTTGTCGCCTCTGTATTGTATCCTCTTAAGTTGAGAGGGGGTGAAGGAGATGACGAGTCATGCCTCGATACAGTGACGAACGCAAAGAGGCGGCGCTGGCCAAGCTGCTGCCACCTCACAGCCTGACGGTGAAGCAGGTGGCTGAGCAGGAGAACATCTCCGAGCCGACCATCTACAAGTGGCGCCAGGAAGCCCGAGAGCAGGGCCAGTGTTTTCCGGACAGCGACCACCCGGATCCGGAGGGCTGGACCTCCCGGGACAAGTTTGCAGCGGTGGTCGAGACCGCCGCCATGAACGCTCAGGAGCGCTCCGAATACTGCCGAAGCCGTGGCCTCTACACCGGGCAGTTGGAGCGCTGGCGCGTCGACTGTGAGCAGGCCGCCGACCTGGCCGACAGCCGCCGCCAGAGTCAGGAGCGCGAGAGCAAGG # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCCCGGCGGTAAAGGCCGGGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 1216-6070 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOUO01000015.1 Ectothiorhodospira mobilis strain DSM 4180, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 1216 36 81.1 39 CAGA..CC.-........................... CGCCTGGAGTGGGAGCAGGGGATTTGCGAGGGGTTTGCG 1291 37 100.0 37 ..................................... GCTGGGGTACATCCTGGGCGGTCAGGCCTGGTTCGAC 1365 37 100.0 36 ..................................... CCTGGTGCGCCGCGCGCCGTTCGTGGTGGAGATGGC 1438 37 100.0 35 ..................................... TAAATCATCCGGGTATTCAAGACCGATCCGGTCGG 1510 37 100.0 40 ..................................... TGCGCCGTGCGGTCGGACAAAGAAGCAACGGGGGGCACCC 1587 37 100.0 38 ..................................... CGCACGGCGGCGCGCACACTCTGACCGAAATCGCGGGC 1662 37 100.0 36 ..................................... ATGGCGCGTCGCGCGAATCGCTGAGTTCCTGGGAGA 1735 37 100.0 35 ..................................... GCGAAGCCGGCATCGGTCTTGGCGTCGTGCTTCTT 1807 37 100.0 36 ..................................... GGTGCTCGGCCTGTATGACCGCCAGGACACCACCTG 1880 37 100.0 37 ..................................... GTGCAGAACAACGACACTGCCACCACTGACCCAACGG 1954 37 100.0 36 ..................................... CAACCTGACCGGTATCAGCATGAACGCCTGCGTAGG 2027 37 100.0 38 ..................................... CTCCGTATGCCGCCTGCTGCACCGCAGATTCCAAGGGC 2102 37 100.0 36 ..................................... AGCGAAAAGGCCGCCATCCTGAAGGCGCGCCGAAAG 2175 37 100.0 38 ..................................... CGGACCTTTTGGTTCAAGGTGGATCTGGAGGCGCTGGA 2250 37 100.0 38 ..................................... TTCCACCCGACGCATCACCCGCGGTATTCTTCGACACA 2325 37 100.0 38 ..................................... GCGCACTCCCCTTCCCGGCCTACCGCGCCGGAAGCCAG 2400 37 100.0 37 ..................................... AGCACTCGCCACTATGCAGAATCCTGCGTCTCAAGCG 2474 37 100.0 37 ..................................... CCTGGATGCCCTCAGCATCGACGAGCGCGCTTGCTGG 2548 37 100.0 36 ..................................... GCCCAGCGCCCCCAGGACGGGATCAACGGCCGCGCA 2621 37 100.0 35 ..................................... GAGGCCGGAGACGTCGACGCCATCCGCGGGGCTTT 2693 37 100.0 44 ..................................... TGGTGTTCATGCTGCCCTCCTGAGGTAGATCTTGGTGAGGCCGG 2774 37 100.0 38 ..................................... CTGACTCAGAGGTACCACGTGGAGCACATCATCATCGA 2849 37 100.0 38 ..................................... GCGACGCGGTCGGTGGTGGCCGCGGCGCTGGACCCGTT 2924 37 100.0 39 ..................................... GCGGCGATTGATGACCTGGAAAATTGGCGCGGAACCTAA 3000 37 100.0 36 ..................................... ACCACCTTCAGTGGCCAGTGCCACGCCGCGTTAGAG 3073 37 100.0 37 ..................................... TCGTCTGGGCGAGATCCGCCGGAGACGAGCTGAGAAG 3147 37 100.0 38 ..................................... GCCGGCCACTTGGTTCATGCCGCTATGCGGACCTGGCA 3222 37 100.0 37 ..................................... GGGGGATGTCGACGGTGTTGTGTTCGGCCATCAGCAG 3296 37 100.0 38 ..................................... GCCGGCCACTTGGTTCATGCCGCTATGCGGACCTGGCA 3371 37 100.0 37 ..................................... GGGGGATGTCGACGGTGTTGTGTTCGGCCATCAGCAG 3445 37 100.0 38 ..................................... GCCGGCCACTTGGTTCATGCCGCTATGCGGACCTGGCA 3520 37 100.0 37 ..................................... GGGGGATGTCGACGGTGTTGTGTTCGGCCATCAGCAG 3594 37 100.0 37 ..................................... CCCTCCGGGCGGTGGATGCGATTGACCGATGCATTGA 3668 37 100.0 40 ..................................... GCGGCCAATACAACCAGGCCTTTATCCTGGCCGCAGGGCT 3745 37 100.0 36 ..................................... GCGGGTGGAGGAGCCCATGCTGAAGATCTATCAGAA 3818 37 100.0 38 ..................................... AGCAGGAGCACATGAAGGCCGAGGCCGGCATGCAGAAG 3893 37 100.0 40 ..................................... TGGACGTACAGGAGCGCGTCACCTCCTACACCTTCGAGCT 3970 37 100.0 35 ..................................... GCGAAGCTCACGGCCGGGTCCGTGGGCAGCATGGT 4042 37 100.0 36 ..................................... GTCAATCGATGTTTTTGATAAGCGTTTTTTAATTTA 4115 37 100.0 37 ..................................... GCGGCCACTCAGGCAAGCGGTGGTTCTTCCGCTGCCG 4189 37 100.0 37 ..................................... CCCCCCCTGGCGACTGAAGGGCGCGCTTATACATTGG 4263 37 100.0 38 ..................................... AAGGAAATGAACTCAGGATGGAAGCGGCTGATACAGCG 4338 37 100.0 37 ..................................... GACGCTGGCATTCGTGGAACTCGCCAACCGAATTGAC 4412 37 100.0 37 ..................................... GCATGGCCAGGATCACGTCGGGGGCCCAATGGAATAC 4486 37 100.0 37 ..................................... GGCAGAAATGGCCTCCTCCAAGCTCATGGTTACCGCG 4560 37 100.0 38 ..................................... GCCATGTCCTTGATCACACGGTCGCCCACCCACTCGCG 4635 37 100.0 39 ..................................... TATGACTGACGCAGCCACTACCGGCGACACCGGCGACGA 4711 37 100.0 37 ..................................... GGAGGTAGGACTGCTTGGTGCCGAACATCTTGTCGCG 4785 37 100.0 36 ..................................... ATCCTCGCGATCTACGAGGAGACCGACGAGGAGGGC 4858 37 100.0 35 ..................................... CGTGCGGATAAAAATCTCAACCAACGGTTGACAGC 4930 37 100.0 36 ..................................... GCTCAACCAACCGGCCCCCCGTGGGGGCCACCTCAA 5003 37 100.0 36 ..................................... GAAGAAGCATCTCTCCCGGGTGGTGTGGATCTCAGA 5076 37 100.0 35 ..................................... GCGGAGATGCTGTCGAGCAGCCAGATGGTGCCCAA 5148 37 100.0 35 ..................................... GCCCTCACTGCGGCGAGGCCCAAGTACTCAAGTGG 5220 37 100.0 38 ..................................... CGCCCTGGCGAAATGGGTCGCCTGTTTATTGTTGGGCG 5295 37 100.0 40 ..................................... TCGTTCACACTTAGGATCAAAAGGAATAGCTACCTTTTTC 5372 37 100.0 36 ..................................... GCGGGACGCCAGCCGTAATACGAAAGCGTATTGGAA 5445 37 100.0 35 ..................................... TGGCTACGTTCGAGATTCACAACGCAGATTGTGTC 5517 37 100.0 39 ..................................... GCGGCTGTGGAACAGGCTCTTGTGGCGGGGCACCTGGCG 5593 37 100.0 38 ..................................... CGCTGTCTCAAACTCAAATGTCGCACCCCATCCCGCCC 5668 37 100.0 36 ..................................... GTCCGGGACGCTGCGATCAGTCACGGCGGCCTCCCG 5741 37 100.0 36 ..................................... GGGGCAAGGTCGCCCCGTTCTTCCGCGACCTGTGGG 5814 37 100.0 36 ..................................... CTCGGCGGCCAGGGTCTGGTGCTCGTAGTCGATCAC 5887 37 100.0 36 ..................................... TTCAAAGCGGTGCAGGCGACGACCCAGATGATCCAC 5960 37 100.0 37 ..................................... CCGAGGCGATGATCCGGATCAAGGCGGAGCCCATCAG 6034 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 66 37 99.7 37 GCTTCAATGAGGCCCCGGCGGTAAAGGCCGGGGAAAC # Left flank : AGCAGTGTTTCAACCAGCCGCTGGTGCTGCACTCCGACAACGGCAGCCCGTTCAAGGGAGCGACGCTGAGAGCGCGACTGACGGCTTTGAAAATCGAACCGTCGTACAGCCGGCCGCGGGTGTCCAACGACAACCCGTTCTCGGAGTCGTTGTTTGCCACCTGCAAGGCGATGCCGGCATATCCGGCCAACGGCTTCGAGAGCCTGGAGGCCGCCCGGGTATGGGTCCACCGCTTCGTACAGTGGTACAACCACGAGCACCGGCACAGCGGCATTCAGTACGTGACGCCGGTCGAGCGGCACAACGGTGACGATGCGGCCATCCTGGCTGGGCGTCACCAGGTCTACGTCGAGGCGAAGGCCCGGAACCCGCGCCGCTGGAGCCGAGAGATACGGGACTGGCGCCCCGTCGGGGCAGTCCATCTCAACCCGGAGAAGGAAACCCAGGGTTCAGACCTGACCAGAGCAGCCTGAAACGGTTTGAGGCGACAACTTCGTTGA # Right flank : CGGACTCCATCCAGAGGTGCGGCAGGACTCGCTTTCCGGTATGAATTGCGAGTATCTGTAGGTGGGGGTCAGGCTTGAGCACCTCCGGATCATGCCTTGTCACCAACGCTTTGGGTAAGTATCGGTTTTTTAAAGAGTTAATGTTTGCGAGCATCTCCCGGAGTTTCTGGGGCACTGGGTTGCTCGCATTGTTTCGGCGGATTCAGATGATGATGGGTGCCAGGTCGATGGGCTCGAAGCTGGCTTTCCCTAGGCTGACCACCTTGGGTTCTACGGTATCGACATTTCCAAGATCAATCAAGAGGATGTGGTCTTCCTGGTTATGGATGATGCCTTCCAGAAGGGAGATGAGTTCGGCATGTCGTTTGCTTTCCAGGCGGCACTGGAATATGGAAAGTTGTACCCATTCGCCATACCCATGCATGATTTTGAATACCCGTCGCCAGCGTTTCGGATCGCTGATATCGTATGCGACTATATAGAGTCTAGGGGTTTCCATG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCCCGGCGGTAAAGGCCGGGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 948-200 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOUO01000009.1 Ectothiorhodospira mobilis strain DSM 4180, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 947 37 100.0 34 ..................................... CTATACTCATTCGCCCGGTTCTCTGGTTCGGTTC 876 37 100.0 35 ..................................... ATCGGATAATGGAACGAGATCATCTCGTCGCCCGC 804 37 100.0 30 ..................................... GGATTCATAGTGCTTCTCCTTTGTTGGTTG 737 37 100.0 34 ..................................... TCCGCTTCAAACCAGTAAATTGTTGTTTCATCTT 666 37 100.0 34 ..................................... GCCTGTTCCTGGTGCTCCTCCTGCCTCATGCCGC 595 37 100.0 35 ..................................... GCTCGCTGCCTGGCTCGCCAGCGCAGCGGCAATCA 523 37 100.0 36 ..................................... ATCCGGCCAGCCCGCACGGTGCTCCGGTGCGACGGA 450 37 100.0 35 ..................................... GTCGATGTGGGCGGATTTCTCGGCCATCTTCAGGG 378 37 100.0 34 ..................................... CACCACGCCCCTACCCACGGGGCACCCACCAGAC 307 37 100.0 34 ..................................... ATGTCCTCCAGGTCCTGCGTGAAGACCTCCGAGA 236 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 11 37 100.0 34 GACCGAAAACCTTCCCTGAAGAAGAAGGGATTAAGAC # Left flank : TCTCGGGATGTCGGTGACGGCGCAGAAGGAATGGATCATCTGCTACGATATCCGCGACCCCAAGCGCCTCACCCGCGTTCACCGGTTCCTCAAGGGACACGGCCAACCGGTGCAGTACTCGGTCTTCTACTACGAAGGCCATACCGGCCAACTGGGCCGTCTCCTGCAGGACCTGGAAGAACTCATCGACCCCCGAAGAGACGATGTGCGTGCCTACCCCATCCCCCGCCCCATGGAGGTTCATACCCTGGGCCGGGGTAGCCTTCCGGACGATGTGGAACTACACTCCGATAAGGCCCCCGGCCTGGCCCTTTTCCTGCAAGGACAGCACAAGACATGAAGACCAAACCAGTACATTCAACCGGCAGCAGGATACCCCGTATCCCCCGTCCATCCGGATGGAATGGCCCACTCAAACCGAAGTTCCCTCCACAGAAGCCGGAGTTCTCCGGAAACCCAGCTGCAAGTCATGATTTCTGCAGCATTATCCGCATCGAGCA # Right flank : CGGCGTTTGTGAGCTCCACGTGGGGGCCTCGGCGGCTGTCAAGGTGGTTGTCGCCTGAGAGCACATCGTTATGCAGCCATTTTCAGTGGCTGATCTTGAGCAACGCGCTCAGGATTCATGGTGACGATATCGACATGCGACCAGTTACGAGTCTTTCCACTCCAGCGCTCCGGGCGAAGCTGTCGGGCTCTTTGGAATTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACCGAAAACCTTCCCTGAAGAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 8299-9486 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOUO01000025.1 Ectothiorhodospira mobilis strain DSM 4180, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8299 29 100.0 32 ............................. GCGCCCCGCCGGACCGGGAAAGCCCCAGGGCC 8360 29 100.0 32 ............................. CCCAGGGCCACCGGCGCCACGGCCAGCGGGTC 8421 29 100.0 32 ............................. CTGGTACTCACCCAGGACTTACCGCAGGAGGC 8482 29 100.0 32 ............................. GGACTTGACATTAGATATTTGTTAGGTTACTA 8543 29 100.0 32 ............................. ACGGCGGCCAGTTCTTCCCTGGCCTCCCGTTC 8604 29 100.0 32 ............................. TTTTCCCACTAGCCGGATCTTTATGGTTCGGG 8665 29 100.0 32 ............................. GTTCCGTTAGGAATGCTGACGTAGGTGGGTTC 8726 29 100.0 32 ............................. TCCGATCGTCCAGCACGGCCTGATAGACCGTC 8787 29 100.0 32 ............................. TCCGATTCGGACAGGATGCGCTCCAGGGATTG 8848 29 100.0 32 ............................. GATTCGATGGTGGAGACGGGGAGCCGGGCAGC 8909 29 100.0 32 ............................. TCCGGCTCGAGTAGGTGGATCACTCGGCCCTG 8970 29 100.0 32 ............................. GCATCCTCCACCGTGACGATCTGGCGCCACTG 9031 29 100.0 32 ............................. AAGAAGGTCGCCCCGATCTGGCGGCTCTTGAG 9092 29 100.0 32 ............................. GTGTGGTTGGTCGCGTCGTAGTCCGGCAGCAC 9153 29 100.0 32 ............................. CTCCTGGGAGCGACGGCATGCGCACCGTGCGC 9214 29 100.0 32 ............................. TCCTCGGGTAGGCGCTCCACGGTGCTGGGGCG 9275 29 100.0 32 ............................. CCGGTCAGCGCCAAGCGCCGCGGCCTCGCCTG 9336 29 100.0 32 ............................. GACTTCATGGCGGGCACGTGGTCCCCGATTAA 9397 29 100.0 32 ............................. ACCACGACGACCACATGCACACCCCTGAAAGA 9458 29 93.1 0 .....................T......T | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 CCGTTCCCCGCGCCCGCGGGGCTGAACCG # Left flank : GCCCCCACCTCCTGCTCCAGAGGCACAACCGCCAGCCATCCCCGAAGCCCAATCCATAGGCGACGTTGGACACAGGAGTTAGTCAATGGCCATGCTAGTCGTCGTCACCGAGGCCGTCCCGCCCCGCCTACGGGGAAGGCTGGCCATCTGGCTTCTGGAAATCCGGGCCGGTGTCTATATCGGGGATGTATCTCGTCGGGTCCGGGAACTGATCTGGGAACAGGTCAACGCCCTGGTCGATGATGGGAACGTGGTTATGGCCTGGGCGAGTCAGCACGAATCCGGCTTCGAGTTCCAGACATGTGGAAAAAATCGCCGTATTCCAGTGGATTACGAGGGTCTGCAGCTGGTGCGTTTCGCGCCCGATCCGGAAGAGGAAATGTAACTCTCTGATATGGAAGCGTTCTTTAACAAAAAGGAAACCCGGCCAGGGGGGGGTATTTGCTGGTGGATTATGGCTTTCCCTGCAAAGCCTTTTCATTCAGTATATTAGATGAAGT # Right flank : TGAGGGGGCGGGCTGGCAAGACGCGGGCGCGTCGAAGCGCTACGGGCAACCGTTGGTTAAACGGCGGTTAGAGCGCAATGGCGAGGTGTTTGAAGCGGTCTTTGAGGTGCGCATAAAGCGCAAGATGCTGGCGCTGGAGACGTTCTATGTCAGGCCGAAGAGTGAGTGACCTGGCTGGCACCCCTGCCGCAACGTCCGCAACGTTTCGTGGTATGAGCACGACGGTCCGATGCGCCAGCCAAGCTACGGGAGAGCATAGCAAATGATCGAAGTGCAGATCGATGGCGCCGAACTGACCGCCGCCCTGGAGCGGTTGGCCCGCTCCGGCGCAGAGCTGCGCCCGGTGCTGCAGGAGGCCGGCGAACTGCTGGTGCACACCACCCGGCCCGTTCCCCGCGCCCGCGGGGCTGAATCCTCTGCCAAGGACCTTCTGGCAATTCCCGGACCCCGCGTAGGCGGGTTGGAGGGTTCATCTATGGCATACTCGTTTTGAGACTCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCCCGCGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCGCCCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 105-2184 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOUO01000010.1 Ectothiorhodospira mobilis strain DSM 4180, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 105 37 100.0 33 ..................................... TAGGTTTCTAAGTTGGTTGGCTTGTTAGCTGGT 175 37 100.0 36 ..................................... AGCAGATGGCTGCTCGGCCCCCCTGCGGACACCTGG 248 37 100.0 34 ..................................... GATTTCTAACTGAGCATCCGCGGGGATGCTCCCC 319 37 100.0 31 ..................................... TTCTTCGGCCAGCAGGTCAACTCGCAGAACC 387 37 100.0 33 ..................................... CGCGATCGAACAGCGCCTCTACGGTGGCTGCTA 457 37 100.0 33 ..................................... TCACCCCCCAGTAGGGGCCGCACTGGAAAAAGC 527 37 100.0 35 ..................................... AGCGCCCTGGCCCCCACCCCATCGGCCACCACGCG 599 37 100.0 32 ..................................... CCAGTGCCTTTTCCGCGTCCGCCTTGATCGCG 668 37 100.0 34 ..................................... TCGAGAGTGTCGTTTGACATGGTAGTTCTCCTCC 739 37 100.0 34 ..................................... GTACGTCATGGGGCGGCATTCGTCCCTACGTACC 810 37 100.0 34 ..................................... GGTGGATGAGACACAAATGAGGATAGCAACAAAA 881 37 100.0 34 ..................................... CGACGGTGACGTTTTCGGTACTCATGGTCATTCT 952 37 100.0 35 ..................................... AGATACCCGTCCCGGGCGGTTAGCAGGAGGTGGGC 1024 37 100.0 33 ..................................... GTCAGCGCCATAGTTTCGCCGTCAATCTCCAGC 1094 37 100.0 33 ..................................... CAAGACTCAGACACCGGGTTGGCCACGTCCGGG 1164 37 100.0 32 ..................................... AAACTGTTCATGCGGTTACTCATGTTACGATC 1233 37 100.0 32 ..................................... AGATACCCGTCCCGGGCGGTTAGCAGGAGGTG 1302 37 100.0 33 ..................................... CCGCTGATGGGGGTGGTCTTCCGGGGCTGTTAC 1372 37 100.0 33 ..................................... CGTTCATTGTCGCTGTCCTCCTCTTTAATCGGG 1442 37 100.0 34 ..................................... GTGGGCAGGGTGCGCAGGATCGCACTACGCCGGA 1513 37 100.0 34 ..................................... TTCGGGGCGGGGGCGGCTCCACCCGCACCCCGAG 1584 37 100.0 34 ..................................... CCAAAACGGATTGACGGTATGCTGTTCCCTATCA 1655 37 100.0 33 ..................................... GAGTTTTCATCTATATAGTCGGGATGGAGACGG 1725 37 100.0 33 ..................................... CCGGCGCGGGAACCGCGCCGGGGCGAACGGCTA 1795 37 100.0 33 ..................................... CAATACGCCTCGAATACTTCCTCGGGGGTGACG 1865 37 100.0 34 ..................................... ATCGGGGCTTAGACCGAGAAATCCTCCAACGGTA 1936 37 100.0 34 ..................................... GCCGGGGAATAGCGATAGGCGCCGTAGTTCCCGG 2007 37 100.0 34 ..................................... CTCCGCTGGTAAGCCAGGTTTTCGGGGTCCAGAT 2078 37 97.3 33 ........G............................ GGGAGGCCCGGGCATACTTCGTCCGCCCGGGCC 2148 37 97.3 0 ........G............................ | ========== ====== ====== ====== ===================================== ==================================== ================== 30 37 99.8 33 GACCGAAAACCTTCCCTGAAGAAGAAGGGATTAAGAC # Left flank : TCAGGATATCGTGGCATCTTGGGCGCTCCTCTCTCGCCCCCTGGGTGTTTTAAATACTCTATCAAACCAGACGACACTTATCCTGACAGGGGGGGGCCTCCGGCG # Right flank : CTCCATCGAGGCGTAGCAATACGCCGGAGGATAGGTGGGACATGATGTTTCTCCCTCGGTTTGCAATGGAAGCGGTTGCTTCGGAGGGAGTTGCGTGCACAAAAAACCCACCGCGCCTGGGACGCGGTGGGTTGGGTGGATCGGGCGTGCGCCGGGGCGCACTCAGTGCTTGTGTTTCATCTGCTTGAATTTGTCGCGGTTCTGGTCGAACCACTTGCCAAGCCGGATCAGGCCATAGGAGACCAGGATCACAGCGAATCCGGTTACGATGATCGTAAGGGAGAGATCACTCATTGCGGTGCTCGTGATGTATTCGTAGTAAGGTTAGCACGTTTGTGCGCGTCGTGACCCGGTTGAAAAAATCGGAGATTTGTTGGCTATTATAGGCTCTACAATCCTGGAAGAGTGGCAGATTGCATGCATGGCTGAAGGGGCTTTATCTCGCGCAAAGTGGTGAGATACAGGCCGACAGGAGGAACCCGTAATGGACAGTATCCGTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACCGAAAACCTTCCCTGAAGAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //