Array 1 15731-20686 **** Predicted by CRISPRDetect 2.4 *** >NZ_MASQ01000070.1 Acidithiobacillus ferrivorans strain YL15 Contig_161, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 15731 37 100.0 31 ..................................... AGCGCGTTCTGCAGTTGTCGGCACTAACAAC 15799 37 100.0 33 ..................................... TGTGATCGGCTCATTGGTGATGAGGGCTTGTAG 15869 37 100.0 33 ..................................... CGTGTTCGTCGCCGCGCTCCGGTAGCCGGTGTT 15939 37 100.0 32 ..................................... GGGAAAGGGAGTTGAAATATGTTCGTAATGAG 16008 37 100.0 32 ..................................... AAACTGGTGGTTCGGATTTACATAGATCGCCT 16077 37 100.0 31 ..................................... GAATATTTTAGCCTTGGCGTCGTCGATTTGC 16145 37 100.0 34 ..................................... TGTACTGCGCTGAATTAGTTGCGGAAGGTTAATC 16216 37 100.0 35 ..................................... GTTCCATCTTCTTCTCCCCTGCGCCCGGGTGGGCT 16288 37 100.0 34 ..................................... GCCGCGTACAGAGATTCAATCGCCGGGATGATTT 16359 37 100.0 33 ..................................... ATAAAACCGGCTTGCATATTGCACAGCGCAATC 16429 37 100.0 33 ..................................... TTGTGGTGTTGAGCGGTAAGCGTGAAGGCATCA 16499 37 100.0 32 ..................................... TATTTCACCGAGTCAACATAGGCGCTCAAAAT 16568 37 100.0 33 ..................................... GCCGCCCATGCAGCGGACAATGCGACCAGTGCG 16638 37 100.0 33 ..................................... CATGTCACACCTTTTGTTATGCCATCCGTTATC 16708 37 100.0 32 ..................................... GGATTTAAGTGCGGCAATTATCATGTCGGCAT 16777 37 100.0 34 ..................................... GCGTACCGTGCGTCCCATATGGCGTCCCACGCGG 16848 37 100.0 34 ..................................... GAATGCCAGCCGAGCGCACTGGATCGTGGCTTTG 16919 37 100.0 33 ..................................... GTGGGTAGCGGGTCGGTGTTGAGATATGTATTG 16989 37 100.0 32 ..................................... GTAATTATATGCTCCGTTTGCAAACGTAATGT 17058 37 100.0 32 ..................................... CGATGTGGTTGTTTGGGAGTGCGGCGGTCGGC 17127 37 100.0 33 ..................................... GTCGCTATCGGTCGCACGCCATTTCGCCCAGCC 17197 37 100.0 33 ..................................... TTTCACTACCTCAAATGTTGGGGCTTTTCCACC 17267 37 100.0 35 ..................................... GTAGGCCCCCTTAAGGGCCTATCGTTGAGCTATAG 17339 37 100.0 34 ..................................... GTTTGTTTAATTTACTAATAAGCACCCGCATCTT 17410 37 100.0 33 ..................................... CCAAGCTTGCGCTCCTACCTCCGCATCCATGCG 17480 37 100.0 33 ..................................... CAGATAAATCGAACATGTTGCGCGGTGAGTTCA 17550 37 100.0 34 ..................................... CTACATCGAACTGCAATAGTAAATTAAAGGAAAG 17621 37 100.0 33 ..................................... AATACAGATACTGCCTGTGTTCTGGTCAAAAGT 17691 37 100.0 33 ..................................... CTCAGCTTGCGCGATGGTGTGCATCAGCAGTTT 17761 37 100.0 34 ..................................... GATAATTTCTTGATGCTTATCGTGGGCTTGCATA 17832 37 100.0 33 ..................................... TCGGTGGTGTTATGATGTTAGGCCGCGTGGCTG 17902 37 100.0 34 ..................................... TGTGAGTTACCGACGATGATGGATAGTGCTGCGA 17973 37 100.0 33 ..................................... AAATACCGGAGCCTTTCCCACACTAGTAACAGT 18043 37 100.0 34 ..................................... GGCCCTGTGGTGCTTTCGTATTCATTTTTGTTTT 18114 37 100.0 35 ..................................... TCTTGAGATTTATAACATCTACCAAAGTGGGAACC 18186 37 100.0 32 ..................................... CGGTTTCGCAGCCCGGATTTGGCCAGCCTTGG 18255 37 100.0 34 ..................................... TGCGGCCATTGTGGTGTCCTGTGCGGCCTGTGCC 18326 37 100.0 32 ..................................... GATCGGCCACAATCATCAAAGCCATCATCTGT 18395 37 100.0 33 ..................................... CCCCATACGATACTTACACTCCCAGCCACCATG 18465 37 100.0 31 ..................................... GTGTGTCCTGTGCGGCCAGTGCGGCGTCATA 18533 37 100.0 34 ..................................... TTACCAACGGTGTACTCCTCTTTATGGCTTAATA 18604 37 100.0 35 ..................................... ACAGCACACCCGCCTACATCAAGAAAAAGACCATG 18676 37 100.0 34 ..................................... GAAAAGATTGCGTGCCACTTTCGCGTTAGCACGA 18747 37 100.0 34 ..................................... ACGTCGTTAACAACACACCTAACACACCTAACCC 18818 37 100.0 33 ..................................... ACATCTAACAACGTAGGCACGTTCTTGATTTTG 18888 37 100.0 33 ..................................... CTGATTCGTTTGACGAATTTGACGCTTTACGTG 18958 37 100.0 34 ..................................... TCAAAGTTTCAATCCACCACCGCGCTTCACGAAT 19029 37 100.0 32 ..................................... GGTTGGCACCGCGCAAGTTGGCACCGCGCAAG 19098 37 100.0 33 ..................................... ATAATAAAGCTCGCCACTAAACAACCGCACCGC 19168 37 100.0 35 ..................................... CCAAGCACAACGGCATGGAAGTAAAAAGCGCACTT 19240 37 100.0 35 ..................................... TATACTCGCAGCATCAAGGATACAGGCATTACCAC 19312 37 100.0 34 ..................................... GTGGGTGTATTCTTAAACTTGCTTTTATCAAGTA 19383 37 100.0 32 ..................................... CGTTACCACTTACATGTGCAGTACCACTGATA 19452 37 100.0 33 ..................................... ACGCGCATCACCACAAACCCACGCGTACCCACT 19522 37 100.0 34 ..................................... CACTGACATGCGCCTTCCCAAACACACAAGCGTT 19593 37 100.0 34 ..................................... TGGGTAGCAACAATTTATCTCCCGTGGGAGACTA 19664 37 100.0 32 ..................................... CCGTGTCCGATACCCACCCACCACCTAAGTGC 19733 37 100.0 34 ..................................... TTACAGGATGAGAGAAGTTAAAAAATTTCCCAAG 19804 37 100.0 34 ..................................... GTTTTTTTATCTTCGGATGTTGAAGAATATCTGT 19875 37 100.0 34 ..................................... AACACGTTCCCACTGATATGGGCAGTACCACTGA 19946 37 100.0 34 ..................................... CAACACGTTCCCACTGATATGGGCAGTACCACTG 20017 37 100.0 33 ..................................... CCCGGATTTTCCCGAAGATTTCCGCCGCCTTCT 20087 37 100.0 33 ..................................... GTCAGATACCGGAGTAGCACTCGTGGGGATTGT 20157 37 100.0 34 ..................................... TACATCAGGCGTTTGTTTTGCCATATTTTGATAG 20228 37 100.0 33 ..................................... GTCATACTTGCGCACGTCACCGTGTTCTATTCC 20298 37 100.0 33 ..................................... ACATTTTCCCGGAACGCTTCGGCGTTTTTTGCG 20368 37 100.0 34 ..................................... TTCTCCTTAGTTGAATGAATAGTTGGTTACTGGC 20439 37 100.0 32 ..................................... TCGGTTCTCCCTTATGCCAGGCACGCAGGAGC 20508 37 100.0 34 ..................................... TTTGCCAGTTTTCCCCATAACTGTTCCTGCGGAT 20579 37 100.0 34 ..................................... ATCAGCGTGGGGACGGACTTGATCTTTGATGCTT 20650 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 71 37 100.0 33 GTAGGAATCATTGCCCTGATCAATAAGGGATTAAGAC # Left flank : CGACCCTGTAAGATTGGGTCGTATCAGTCGTTTTGCTCGAACAATCGGTATTCCTTTGCAGTATTCCATCATCTTGTTACCATTATCACGTCATAGGGTTGAGCAGATAGCTGAGAGACTCTCTGAAATGATTAACAAAGATGAGGATGACGTTCGGATTTATCATCTTGTTCCTGGCACGCGGATCTGGCACGCCGGTCACCCTTGGATGCCTGATGGGATTATGGTGAGCACATTACCGCTCTCTCCGACTATAAGCACCCTTGACATTATTGATTAGAATGGAAATCATGTATCATGCTTGATAGGTGGTAATGGATGAGCATGATAGGAATTGGTGGTCATCCATCACCGTGAATATTGCTCATTACCAACCGAGGATGGATGCTGACCATGGTGACGGAGCGGATCGTGCAAAAGGTTAAATCTTCGGATGAACATATCTTTTGGAAAGCGCCCGTTCAACATGTTGTTTATTTGTCGGTTTTTATGCCTGGTCT # Right flank : CACCGAGTCATTACCTCCGCTGGCGAAAATTACGGTAGGAATCATTTACCTCGATGGTGTTGATGTTAACAGGTTGCCTCTTGCACCTGAGTGTAATGATCCTTTGACTGATCGTACCAAACATATTGGACACTCGGTGTCCAATGATAGTTGGATAATGTGTCTGCGGGTAAATGTTCATTTATGTCGGTATCGTGACGTGAAAAGCTGTTCGTTTTAGCAGAGATTTTCCCCGCTCGCACAGGATTTGGAGGGTTGGATGAAATTTGTCTTGAATCGGGATCGCATGAAATCCCTAGTTTCGGATATGGCAGTCTTTCTCACACATGCCCGGAACGGTGATGATCCCCGCTTGAAATCCCACATTCCTTCAGAAACTGCAGATGTGATCACCAACTTCCAACACTTGCTGGATGTTTTTCGCGAACAGACTGTTCAGCGGGCACGCTCGTATCTTGAAGACCTGCAGCGAGCTGACCCGCGCCATCCGGTTTTTGAGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGAATCATTGCCCTGATCAATAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 47159-42930 **** Predicted by CRISPRDetect 2.4 *** >NZ_MASQ01000095.1 Acidithiobacillus ferrivorans strain YL15 Contig_184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47158 28 100.0 32 ............................ TTGTCGATGAGGCTCAAGCTGTTTTCCGTCCC 47098 28 100.0 32 ............................ TCACGGGTAAACAAGTGGGAGAATTCAGACTC 47038 28 100.0 32 ............................ TATGCCATAGACGGGGACCCATGCAGAAGAAC 46978 28 100.0 32 ............................ GCGTCCGGGTAATCCTCCAGCCACTCGTTGAA 46918 28 100.0 32 ............................ CTGCGGCATCCCGTGGGGCATCCCATGCGGCA 46858 28 100.0 32 ............................ CTGGGCAAAACCCAAGCCGACGACGAGCCGCT 46798 28 100.0 32 ............................ GGCTATTGTGGTGGCCTCTCAGCAGGCGGCAA 46738 28 100.0 32 ............................ ACATTAACGGCCATCGAAACGGCCCACGGAGT 46678 28 100.0 32 ............................ GGAGCCAAGCGAGGAAGAAAGCCCGGCACAGC 46618 28 100.0 32 ............................ AGCGTCGTGACCGTCCACAATTTCCAGCCTAA 46558 28 100.0 32 ............................ TGCTGATAGACAAGGCCAAGATCGAGCCTGGC 46498 28 100.0 32 ............................ AGCAATAAAGCCGACCCAGGGTCGGGGGATGT 46438 28 100.0 32 ............................ TTAATCGAAATACGCGTTGACGTTCATTTGCC 46378 28 100.0 32 ............................ TGTCGCAATGTGAGTGTCTGTGGGGCAATAAT 46318 28 100.0 32 ............................ AATATTCAGACCACGTTGCAAGAAATCGCTGC 46258 28 100.0 32 ............................ ATTAAGTGTAATAATTATCGGGCTTACTAGCA 46198 28 100.0 32 ............................ ATATGGTGTAAAGCAGGTTTACACGGTACCAT 46138 28 100.0 32 ............................ CAAAGCCAGCAGACGCATAGGTCAGTTTGCCA 46078 28 100.0 32 ............................ AATATGTCGCCGGGGCCTATTCCGTGCGCCGC 46018 28 100.0 32 ............................ CGTCCGGGCAGTTGTTGGCCGAGTTCACCAAT 45958 28 100.0 32 ............................ AGCAGGTGCCAAATCAGACATTGCGGACCACG 45898 28 100.0 32 ............................ TACTGCTGTTCGTAGGCCGCCCGGTGCCAGAC 45838 28 100.0 32 ............................ TGGTTGACGCAATGGCCAAGTTCGGCGTGCGC 45778 28 100.0 32 ............................ GTAATTATAGGCGCCGTTTGCGAACGCGATGT 45718 28 100.0 32 ............................ GATATGGTGGGGGTAAAAATAGACGGCGTCTT 45658 28 100.0 32 ............................ AACAAATCCAACAGGCTAACCTACTCGATAAA 45598 28 100.0 32 ............................ ACCTGCCGCGTCCGCATCCTTGCAAGCATTCA 45538 28 100.0 32 ............................ GCTCAGATATGTGCCCAGGGAGCATCCGGTGA 45478 28 100.0 32 ............................ AATATTCCCCCGCCAATCCATTGTCCGATGCC 45418 28 100.0 32 ............................ CATGTTCCGCTGGTCTTTTTCTGCTTGAAGTT 45358 28 100.0 32 ............................ AATCGACCGCCGTGCTCATGCCGTCGCGGAGG 45298 28 100.0 32 ............................ CACATCGATAGTATTGGCGAATCGTTGATAGG 45238 28 100.0 32 ............................ CTAAAAAGGTTAAACCAAAACTCATTAGAGGC 45178 28 100.0 32 ............................ AATGTGGTGATTATCGGGATTATCGCCATCAT 45118 28 100.0 32 ............................ AAATTAATCGGGGTTGCGCATGGCATGCTGGC 45058 28 100.0 32 ............................ TATAAGCGCATTACCACCGATACGCGCAATAC 44998 28 100.0 32 ............................ AATCCAAACAAAAAAGTGGTACGGAAAAGAAT 44938 28 100.0 32 ............................ CGAGCCAGCGTGCAGATGCATGCCGCCGAATG 44878 28 100.0 32 ............................ ACTTATACGTGCGGTATCACGGATACTGGCGT 44818 28 100.0 32 ............................ AGTTCGTCGCCAGAGATAAAAACGTAAGGTAA 44758 28 96.4 32 .C.......................... AGTAAGTCTGAAGAGTGAAGCCGCGTAGCTTG 44698 28 100.0 32 ............................ GTGGCGCAGTACATGCGCACCGGGAAATATCC 44638 28 100.0 32 ............................ TCAAACAGCCATACATGGCCCATGCGCTGTGG 44578 28 100.0 32 ............................ AAGCTGGACGCAAAGAGAAAGGCACGCATCGA 44518 28 100.0 32 ............................ GCAATGGCATCACCACTCAGCATCTATAACAT 44458 28 100.0 32 ............................ ACATAGAAGGCCTGATAATCAAGGCCGAAGCC 44398 28 100.0 32 ............................ TGCACAGGATGAACGCAAGCAGGAGAGGATAC 44338 28 100.0 32 ............................ TCAAGAAATCGGGAGAGGTGATCGAAGAAGGC 44278 28 100.0 32 ............................ CAGTGGGAATCAGCCTTCCTGGCAAGCTGGAA 44218 28 100.0 32 ............................ TGGATGGCGGTGGATGTGGCCTGATCCTGGGT 44158 28 100.0 32 ............................ TGGAGACGGAGCAGGGCGTCCACCAGCGTCTG 44098 28 100.0 32 ............................ CAGCGGCGTTCACGCGTACGAGCTGATAGCGA 44038 28 100.0 32 ............................ TTTGCCATGGAATCTGGCTTTGTCAGCACTGA 43978 28 100.0 32 ............................ ACAAAGGCGAAGTCACCACACAGCACGGCGGC 43918 28 100.0 32 ............................ CACCACAAAGGTGCCCGTAATGGTTCCACCGA 43858 28 100.0 32 ............................ TATATAAATCTTTCCAGATTCAGAATTGAAGA 43798 28 100.0 32 ............................ ACTTGCTGCCCGTCTTTTGATACCAGCCTTCT 43738 28 100.0 32 ............................ AGTTTGAGAAAGCAAACGTGGAATACTGCGGC 43678 28 100.0 32 ............................ TTATTTGCACCCGATCAAGGTTATGGAGGCAT 43618 28 100.0 32 ............................ TTGTGGGTGCTGAGGGTAGCACGAACTGGTCC 43558 28 100.0 32 ............................ ATTGTGATGCGATCAACTGAGAACGCAGGATG 43498 28 100.0 32 ............................ ACAACCGCTGGAGCCATCACCGCAACGGCAGC 43438 28 100.0 33 ............................ CTGGCATTGCTTCGCCAATTCGCCCTGTGTGGC 43377 28 100.0 32 ............................ CTGCGAGTATCGACCCTGTGGTAAAGGGGTTG 43317 28 100.0 32 ............................ TGTATGACGGCCGTGCTCTCCGCGCTCGCAGG 43257 28 100.0 32 ............................ TGCAATTGGCTCAGGCTTTACCGCGTCCGGTC 43197 28 100.0 32 ............................ GTCCAGAGTACCCGGCGCCCCCCTGGACATTG 43137 28 100.0 32 ............................ TCACCCATGACGCTTGGCCCTCGCTTCCATGC 43077 28 100.0 32 ............................ AATACCAGCAAGCGTTGCACGCCCATGATGAC 43017 28 100.0 32 ............................ TGAATTAGGAGAAGGCGTCACCGTCTGGCGTC 42957 28 78.6 0 ...................GG...TCCA | ========== ====== ====== ====== ============================ ================================= ================== 71 28 99.6 32 GTTTATCGCCGCGTAGGCGATTGAGAAG # Left flank : GTTCGCAAAGGCGCTATACGCGGCTCTAGCGTCTGTCTATTCTATACCGAAATTCATAAGAGATGCCGGAGCCAAGAAGAAAGACAATCCTGAACAGAGGGTGAATAGCTTTCTGGATCACGGCAACTATCTCGCCTATGGATATGCCGCAGTGGCGTTGCATGGAATGGGTGTACCCTATTTCCTGCCAGTGCTTCACGGTAAGACCAGAAGGGGTGCATTGGTGTTCGACGTAGCAGATCTTTTCAAGGATTGGCTGGTGATGCCGCTGGCGTTTCGATGTGCATCTGAAAAAGCAAAAAATAACCAGTTCAGAGCTGAGGTAATCGAGCATGCCCTGAAGCATGAGGTGTTGGATGATGTGATGGGCTTCATTTCTAGTCTTCCAGATAAAGTAACATGAAATCAGTAAGTTATGATTTATCGCGGAATTCGATGTGTTTACGTCAAAAAGACAACCAATGATATGATTATTATAGACTTTGCACTTTGAAAGTCTA # Right flank : GTTTGGATTCGATCACTTTGCTGGCCTACAATCGAGCATGGATATCATTGCCCGTTTACATGAAAGGTCAAACGCACACCACACGCGCCCATTTTTGCTCATCCCATCCCACACACCCACATCCACCTTAAACAGCGAAAGAGAAACCTGCCATGACTCCTTCCACCCTAGCTCCTCTCCAGCAGCGGTTGCGCCAGTGGCTCTCTTCTGAACGGATGGCATGGCTCGCTCCGCTTTCCGGCTGGGTTCTGCTGGTAGCGATTTTTGCAGGAATTGAGCAGACTGGACTCTCCTATACCGATCTCCACCAAGGTATACCAGCGGAGACGGCGATTTTTGCGGTTTCGCTTATAGTGCTTACTGCCTTATTTCTGGTGATCTGGCGGATTCTTGTCTTTCGCCAGAACGAAGTGTGCAGCCAAGCCCGATTGACGGATTTCAATGCCCTCCTCGCCCAGGTGCATCAAACCATTGCCCAGGCAGAAAACGAGACTGCCCTG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATCGCCGCGTAGGCGATTGAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //