Array 1 1021-4774 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJFJ01000041.1 Mycolicibacterium phlei RIVM601174 contig41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1021 29 96.6 32 ............................T CGCAATCGTCGCCCACATCAGCCGCCTCGACC 1082 29 100.0 32 ............................. AACTCGGACCCGAAGTACTCGAGACATCCGGC 1143 29 96.6 32 ............................T GGGCGACTGTTGCCGCTGCCAGCGTCGGCGCA 1204 29 96.6 32 ............................C ACCACCGGCTTCGGGCGCGGCGCGGCGATGCC 1265 29 96.6 32 ............................T TGCATTCCAGTGGTGCTGGTGTCGCTGCGCCG 1326 29 100.0 32 ............................. AACAGCTCCGGATCGACCTGGGCGCACAGTGC 1387 29 96.6 32 ............................T TTTCAATCCGCACACACAAGAGAGGGGTATCC 1448 29 96.6 32 ............................T CGAGCAGTAGCCGCCGGTACGCCGACACCGGC 1509 29 96.6 32 ............................T CCAAATCGTTGGCGCCGAGCGCGACGATGATC 1570 29 100.0 32 ............................. CGGTCCTTGAGGTTGATGGCCGCCTTCGGCAT 1631 29 96.6 32 ............................C AGGCCATCGACACCATCGGTGTGCCGATGATG 1692 29 96.6 32 ............................C GCAACCCGCATCGGCCGGGTTTCGTGGGCGGG 1753 29 100.0 32 ............................. GCGACAGGCATGATGCGTTACGAAGCCAGGGG 1814 29 96.6 32 ............................C AGCGGCATACCGGCGGAGAAGCTGATGTAGTC 1875 29 100.0 32 ............................. CGAAATCGGCTGCCTCAGACTCATTTCCGGTG 1936 29 100.0 32 ............................. TGCGCCACCTGGCGCGCCAAGTGAGAGTTAGG 1997 29 100.0 32 ............................. AAAAGCGACATAGCAACGCTCCATTTGTCGTA 2058 29 96.6 32 ............................C GAAGCATCACGGAGCGCCTCAGGCGCAGATGT 2119 29 100.0 32 ............................. CGCTCACGGAACGGGCCAGAGCTGACATCTAC 2180 29 100.0 32 ............................. TAGTCCCACGGGAACCCCGGCCCGACATCGGT 2241 29 100.0 32 ............................. AAGTCGCCTGCCTGCGGGGCGTACGAACTCCA 2302 29 96.6 32 ............................T GGCACCCGTCCTGGGGACTTCTCTTGGAGAGC 2363 29 100.0 32 ............................. GAGATCGCCCGGCTCAAGAGAGGGCTGGTGAA 2424 29 100.0 32 ............................. AGGTTTGGTGTCCCGAACCTTGGAGACATCAC 2485 29 96.6 32 ............................C TCAAGCTTCTGCCGACGCCAGAGGCCAAGTCC 2546 29 100.0 33 ............................. CCCGCCAGCGGGCCGGAGTTCACCGAGGCCCAG 2608 29 100.0 32 ............................. CTCGCATCGTCCGGCGTCGGGTCGTCGGGCTC 2669 29 100.0 32 ............................. CGCGGCTCAGCGACGTAGTGGCGCAACCAGGC 2730 29 96.6 32 ............................T CCAGCCACACCCCGTGACGCTGGTAGATCAGG 2791 29 100.0 32 ............................. GATCCGTCCTCCTGCTCGACCGCGTGCTCCAG 2852 29 96.6 32 ............................T CTCCCCGCGGGCCTTGGCGCCGATGTACTCCA 2913 29 96.6 32 ............................C AAGCCCATCGGCGAGTCGATCCAGTCGCCGGA 2974 29 100.0 32 ............................. TTGAGCAGGTGTAGTGCGACCGCAGTAACGGT 3035 29 100.0 33 ............................. TCGTACTCGCCGCCATCGGGGACGGCTGCGGGC 3097 29 100.0 32 ............................. TCGACCAACAAGGGGCGCGGCAAGGTCGAGGC 3158 29 100.0 32 ............................. GAGTCGACGTGCCAGAGACGGCAACCCTTGTG 3219 29 100.0 32 ............................. ATCACGTAGTCGCCGGATGACGCTGCCGCGAG 3280 29 96.6 32 ............................C ATGGCCAACCGCCGCGCCAGCCAGGTCGTCGC 3341 29 100.0 32 ............................. TATCCGTTTCGAGAAGAGTGGCGGGGTGGATC 3402 29 96.6 32 ............................A TCCCAGGTGTCGGTGGTGCTGGCCCTGCCCAA 3463 29 100.0 32 ............................. TTCTGACCTCAGCCCGATCTCAGCCCCCCCGA 3524 29 100.0 32 ............................. CGAGAGATGAAGCGGCCTGGCAAGGGCAACCG 3585 29 96.6 32 ............................C TCTGGAAGATGTTGAGGCAGACGTGATTCGGA 3646 29 100.0 32 ............................. CTACTGCGGCGCACACGAATGGCACGTTGGCA 3707 28 96.6 32 ........-.................... TCAAACTGATCGCCCACACGGTCACCAACCCC 3767 29 100.0 32 ............................. GAACAGCGTCACGCAACTCAGCGGGGCATACG 3828 29 96.6 32 ............................T TGCAAGGGCTGCGGATGACGCACGGCTGCGGC 3889 29 96.6 32 ............................C CGTGACCCCGAACAGCTCGAGCAGCTCGTAGC 3950 29 100.0 32 ............................. CAGCAGCCTCACCCTCCAGCACATCAATCAGC 4011 29 96.6 32 ............................C AAGGCCGCCCTGCTGGCGCTGACCACCGCCCA 4072 29 100.0 32 ............................. AAGTCGGTAAGGCCGTCGTGCGGGCGGAGTCA 4133 29 100.0 32 ............................. GGCGCCGCCGGGCGCAAACCGCCAGGAAACGG 4194 29 96.6 33 ............................A AGGAGCCGCCGTTCCTCGTCACGCCCGTGCGCT 4256 29 100.0 32 ............................. TGCACGCTGCGCCCCGGCAGCGGCCGGCTCGG 4317 29 100.0 32 ............................. TTGCCGCCCGGCGCGATCCACCAGTCGGCGGC 4378 29 100.0 33 ............................. TCGACGTCGGCCAGGCGCTCGGCCGCGGCCCAC 4440 29 96.6 32 ............................T CCGACCGAACTCGCACCATCGGCCGAGCCGAC 4501 29 96.6 32 ............................T TCGCGATAGCGAATCTCAAGCACCTTGTCTCC 4562 29 100.0 34 ............................. GAGGAGCGCACCGTGGTCGAGAACCCGCTGGATC 4625 29 96.6 31 .........................G... CTCGACCTCCCAGCCCGAAGGACCGTCTTTG 4685 29 96.6 32 ............................C GGGATGGAGTGCCGGTACTGCGGGATGACGGC 4746 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 62 29 98.5 32 GTGCTCCCCGCGCAGGCGGGGATGATCCG # Left flank : CTCATACGAGGTTGAGTTTTGACCGTTGTTGTGCTCACCGCGGTTCCGAGCGGACTGCGAGGTCATCTGACACGGTGGTTGCTCGAAATCGCCCCCGGGGTCTTCGTCGGACATATTTCTGCACGCGTTCGAGAACTCATGTGGCAGAGAGTGACTCAGTACGCCGGCACCGGGCGTGCCTTGATGGTGTACACGGCGCGAAACGAGCAACGACTGGCTTTCCAGGTTCATGGGCACGACTGGGAACCAGTCGACTATGAAGGGCTACGTTTGATCCGCCGACCCACAGGGCAGGGTGCGGAGAAAGCATGGTCGGTGGGCAGCGAGACTAAAGAGGCTTAGTCGTCCGGTGGCCAACACAAAGATGTGATCTGATGTCGCAGACGGAGCGAGCATGCTGCGCCGAAGACCAAACCCGAACTCAGAGGACCGGCAATGCGCCCCAACCTAAACTAATGCAACTCCGGGTGGCACCGAGATAAACATGCAGGTTACGAAGT # Right flank : GTGGGCCAGGCTGGTGTTGGGGGTGTTGGTGCGTGCGCCAACCCTGATCCGACATGTAACTGAAACTCTTACAGTATCGTAATCGGCGTGGCCCCGGTGATCGAGCACAAGCCCACGTTCTGCCGGATCTGCGAGCCCCTGTGCGGGATGATCGCAACCGTCGAGGACGGTCGGCTGACGGCGCTGAGGCCCGACAAACAGCACCCGCTGTCGGCGGGTTTCGCCTGCCAGAAGGGCATCGCGTTCACCGAGATCGTCAACGACCCGGACCGGGTGACCCGGCCGCTGCGCCGCGGCCCCGCGGGCTTCGAGGAGGTGAGCTGGGACGAGGCGCTCGACGAGATCGCCGCGCGGCTCTCCGACATCCTGCGCCGCCACGGCTCCGGCGCGGTCGGCTGGTACATGGGCAACCCGGGGGCGTTCAGCTACGCGCACACCTTCGCCGCGCTGCTGTTCATGAAGGGGCTGGGCCGCCACGGCCACTACTTCACCGCGTCGTC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //