Array 1 650072-651425 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822030.1 Streptococcus thermophilus isolate STH_CIRM_1046 chromosome STHERMO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 650072 36 100.0 30 .................................... TAACTCATATGTATCTTGACCAACTATTTT 650138 36 100.0 30 .................................... AAATAGCACCTCTAAGCGTTAATGGTATTC 650204 36 100.0 30 .................................... AATATCTACAGGTCACTACAAAGCTACGCT 650270 36 100.0 30 .................................... GTTGGGGTGTGTTTGTAACGGCGTATGCTA 650336 36 100.0 30 .................................... TCAATCAGGTGACGGTGATGCTTATATTAA 650402 36 100.0 30 .................................... CATACATGATAGTTTGTCAACACTTTTGAT 650468 36 100.0 30 .................................... TCAGCATTTGGTTTACATGACCCACGTCTG 650534 36 100.0 30 .................................... CAATCAACAGGTTTGACTGATTATAACGGT 650600 36 100.0 30 .................................... TAGCTACACATGAATTTTATTACAATGGTG 650666 36 100.0 30 .................................... CTTACGTTTGAAAAGAATATCAAATCAATG 650732 36 100.0 30 .................................... TTAAAAAAGGGCCTTTCTCTAAATCAAGTA 650798 36 100.0 30 .................................... TGCTGAACGTATCTGTCCACTGTGTGGCCA 650864 36 100.0 30 .................................... CCGTTCTTCAAACGTTAAATTCCAAGGTGT 650930 36 100.0 30 .................................... GCTGCGATTATGACAATGCTGTCTGTAAGG 650996 36 100.0 30 .................................... GAAGAATTTATTAATAAAGATGGTTCTGCT 651062 36 100.0 30 .................................... AGGCAGAAAAGAAGTATTTTGGTAAGTATG 651128 36 100.0 29 .................................... AAATGGTTTATCGACAAGAAAATGAAGCT 651193 36 100.0 30 .................................... CCAAATTTGCATTATACAAAACGCTCCTTC 651259 36 100.0 30 .................................... ATCCTAACTGCTTTGCTAACTACATCATGG 651325 36 100.0 29 .................................... TAACAAGATAAGATTAGCGTCTTCAACAT 651390 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGAAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACATCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGGTCATTGTAAATAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1385712-1384488 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822030.1 Streptococcus thermophilus isolate STH_CIRM_1046 chromosome STHERMO, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1385711 36 100.0 30 .................................... TGGGGCAAATAACTCCATTACAGAAAATAG 1385645 36 100.0 30 .................................... TACTGCTGTATTTGCTTGGTTATTAGTCTG 1385579 36 100.0 30 .................................... TCTAAATCCAAACAAGTCACAAAATCCTTT 1385513 36 100.0 30 .................................... TAGTATTGTTATTTTCCAAAAAGAGAGGGC 1385447 36 100.0 30 .................................... TTCTCTCAAAGTGTTGAGAAGTCCCTTTAA 1385381 36 100.0 30 .................................... AATGTATCATTCCATAGTGCTTTCAACGAG 1385315 36 100.0 30 .................................... TAGCTAAACAATCGGCTAGCGAGGATATTA 1385249 36 100.0 30 .................................... CCGTCAAAACACACCGAAAGCAGCTAGTGC 1385183 36 100.0 30 .................................... AGTTGTGACTTCGCTTTCGCTTGGCATCCA 1385117 36 100.0 30 .................................... TTTCCAATGCCGTGATGGTTTTCGTCAGGA 1385051 36 100.0 30 .................................... CAAGGTATACGGCATCCCTGATAACGTAGT 1384985 36 100.0 30 .................................... ATTCCATTACAGTTGTTATGGTAAAAATGA 1384919 36 100.0 30 .................................... TATCCCAGAGAATGGAAGAACAATTATAGA 1384853 36 100.0 30 .................................... TGCTTGTGCTTTTGTAATTTTTGCTACTGT 1384787 36 100.0 30 .................................... GCTATGATGACTTGCTCAGTATGTTTAGTT 1384721 36 100.0 30 .................................... CTTTGAAGAAGTATTTCAAAGGCAATAAGA 1384655 36 100.0 30 .................................... TACCTCCCTGGCAACTTGCCCTAAATAGTT 1384589 36 100.0 30 .................................... CACACTTGCACAAGTATGTTTCAATCTTAT 1384523 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //