Array 1 69021-68341 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKJ01000009.1 Akkermansia muciniphila strain GP08 scaf-9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 69020 31 100.0 34 ............................... CGTCCGCCGCCTGGGCCACCTGGCCGTTTGCCAG 68955 31 100.0 34 ............................... GGAATCCGGCTACCTTCGCGCCTTGGAAATCAAA 68890 31 100.0 34 ............................... AACATCTTTCGGGCTGAACCATTCCCTCTTTTCT 68825 31 100.0 34 ............................... CACTAATTTGCACTGCGGGCGGCCCTTGGCGTCA 68760 31 100.0 35 ............................... CGTCCAATAAGCGATAAATCCCGGATGTTTCACCC 68694 31 100.0 33 ............................... TTCTTTTCGCTATCCCATTCTCCGAGATCGTGC 68630 31 100.0 34 ............................... CGCGCAAGGCGTCTTTGATTGCCAGCAGGTTAGA 68565 31 100.0 34 ............................... TGGCCGCAAAACTCGGAGTTGTCCCCCCAGCCTC 68500 31 100.0 34 ............................... TCCACCAGGAGGACGCACCGGAAGCCTTGATGCC 68435 31 100.0 33 ............................... GAGATGGTAGGGCCCGTGCTTCAGGCGATGGGG 68371 31 90.3 0 .....................TA.......G | ========== ====== ====== ====== =============================== =================================== ================== 11 31 99.1 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCAGACGTCTCTACCAGGAGATGGATTGGACGCTGCTGGACGATTTAGCACCGGAGGATGTGACGATTGGCCGGGAGGTTCTGGCCAGGGTTCCGGCGACCTTGTGCCGGATTGAAGAACCGTGGCGGCAGCGTTCCCCTTGGAGTGAGTGGACGGCTTGGTGTTGGCCCAGTCGCACGGTGACTGCCGAGAGCTATGCGGCCAGATTTGCGATGGTGACCACCGGCAGCCCCAGGCTGGATTCCCAGCCCTCCAGCGAGAGAGCCAGGGTGATGCACCTGCTGGCCGATGCCAGGGAGCGGATGATCCGGGAGGGGAGAGTGGCCAGGGAGGACGACGAGGCGGTGGATTGGAGGGGCTTGCTGGCCGCCTGCAAGGGAGATGCAACGGCGTTGCTATGACGATGCAGCGGGGAGGCATTTAAGGTCGTTTTTCCACGATGCTTGATAAATTTTCCACGATGCACTGCGACGTTACACAAGCCATAGGCGTCCAGGCC # Right flank : TCCACATGTCTGCGCGGGGCGCAAGCCGCTCATGCACTGCTTCTTGAAAGAGGAGCAGATCAAAGCTTTATTTTCCGCAACCGTATCGTTTGGTGTTTGGTCTGTTCCCCTGTTATTTTAAGAAAGGACGGTAAGAATCCGTAGTGGAACGGGATGACGGCTCTCTTCCGTTTACCTCTCAGATTGGCATGGTTTGCAGCCTTTTAATGTCCGTCCGCGGCGGGTTGCCGAACATGCGCTTGTATTCCCGGTTGAATTGGGTAGGGCTTTCGTACCCAACGCGGAAGGAGGCGTTTCCTGCGTCCATGTTTTCCACAAGCATCAGGCGGCGGGCCTCATTGAGGCGGATGCGTTTCTGGAATTGAAGCGGGCTGATGGCCGTGAGGGTACGGAAGTGCTGGTGGAAGCTGGACGGGCTCATGCCGGCGCGGCTTGCCAGTTCCCCGATGCTCAACGGCTGGTCGAAGTGCTTTTTTATCCAGTCAATGGCTTTTGCTATC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 649286-648919 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKJ01000001.1 Akkermansia muciniphila strain GP08 scaf-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 649285 33 100.0 34 ................................. CTCCTCCGGCAAAACGGGGAACAGGCAGATGCCG 649218 33 100.0 34 ................................. TTCCGGGTTGCTAAAAAGTTTGGCATTGCACCTT 649151 33 100.0 33 ................................. GGTGCTGTAGCGCAGTGTCCTAATATCGGTCAG 649085 33 100.0 34 ................................. CGTTGGCCGCCGGAGCACCAATTAATACCGCCGC 649018 33 100.0 34 ................................. ATCTACAAACCCGTAGGCAATGGCTTCCGCGGCG 648951 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 6 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTTAGCCATGTATATTCTCATTACTTATGATGTAGCTACGGATGACAAGGCCGGACAGCGGCGGTTGCGTCAAGTTGCCCGCGCCTGTGAAAATATCGGTCAGAGAGTGCAGAATTCCGTGTTTGAATGTGAGCTGGCTCCGGCCCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATCGATAACGAGAGCGACAGCCTGAGAATTTATCACATGGGGTCCAATTGGCATCATAAAATAGAGCAATTGGGCAAGGAGAAGAGTTTCGACATTTCCGGCCCTTTGATCATTTAAAAGCTGTCTGAGCACGGCCTTTGCGCCAACCCCAAGCTCACACCAATTTCCCGGGAGATCGGCGATTGGCGTAATACATTGGGAATGGAAGATTGACAGATGAATACTTAGAAGAGAAGGCTAGGTGATGATGGCCTTCTCCGGGAGGTTGGCGCAAAGTATCGTTTGCGCTGTTGAATAACAATGTATATGGTCAGGCGCA # Right flank : AGCCCCAGGGCATTAGTGGGAATCAACTTGGAATGTCGCCCTCCGCAAGGAGTGCGTAACTCTTCCTAAAAATGAAAAGCTCTCCAGGCTTGTTTGGTCTGGAGAGCTTTTTTTCGGGTTTTGTTGTTTATTTTTCAGCCGGGGGCTGCCGGTTCAGATCGAGTTCTGCGGGAGGGAGGGACTGGAGCAGGGTCAGAATGGGGTCCTGCGGTGCGGCGCCCGCTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGGAGGGCCGCCAGTTTGGTATCTTCCACCAGCGCCTTGAATTTGTCCGCCTGGGAGTATTCTCCATCCGTATCCCGGAAGACGCGGGCCAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGCTCTTTCATGGGCTGGGGAGGGTGTTTTTATCCAGCAGGTTTCCTGCAAGCTGTTCCCCATCCGCGGTGGGGCGGTAGACGTAAGGGCGGCTGTCCCCGAAGCGGTTGATGTATCCCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 659476-658408 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKJ01000001.1 Akkermansia muciniphila strain GP08 scaf-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 659475 31 100.0 34 ............................... ATAGTGTTCTTTTCCGTTTGTGTTTATTTCCACG 659410 31 100.0 34 ............................... GACCACCTTGACCATCTTCCTCAAACCCCCACAG 659345 31 100.0 34 ............................... TCCGGCAGGCATAAACTCGCCCTAGCCAGAGAAA 659280 31 100.0 34 ............................... CACCATGGCGGGCAACTACGTTTTCAACTACTTC 659215 31 100.0 34 ............................... TTTCAGTGCCATATTTTTAGTTTAGTTTAGTTTG 659150 31 100.0 34 ............................... TCGCAGTACATTAACAATATGTCCCGCTCCGCAG 659085 31 100.0 33 ............................... ATAAGGAGCCTGGCGGTCCTCTTCCCCCAGCTT 659021 31 100.0 34 ............................... GATGGTGTTGCCCGTCACCTTGGTGTTCTTCCGC 658956 31 100.0 33 ............................... GCGGAAGTCTTAGAAACAGTCATGTACTGGCTG 658892 31 100.0 34 ............................... TTTGTTGAGCGGGTTTCACGATCCTGTGTTGGCC 658827 31 100.0 33 ............................... AGAGTATTTTTGCCAGAGCCGATCAGCTCTGGT 658763 31 100.0 33 ............................... CTTCGGCAACCCCTTGGCCGCCGTAGAAAGGTC 658699 31 100.0 33 ............................... TTGCTATTTGAAAATGGACGATACAGTAAAAGA 658635 31 100.0 35 ............................... ATTATACAATCTGTCTCATAATTGCAACGTCCACA 658569 31 100.0 35 ............................... AATTTGGCGAGGATCAGCCGGGCCGCGGCGCTTCC 658503 31 100.0 34 ............................... CGCCTTTGTGGGCAACATCGACATGATTGCGGAG 658438 31 80.6 0 .........................GCGCCA | ========== ====== ====== ====== =============================== =================================== ================== 17 31 98.9 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : CTTGGGGAAAACGATGCCTCCCTCAAGGACACGGTAACTATTCGCCACCGCGACTCCATGGAACAGGAACGCGTCGCCATCAAGGACCTGTTGCACTGGCTCATTGCCCGTGTGCGTTAACGGCGCCTTTGACAGCCGCCGATGCCGGAAAACACTTCAAGGCCACTCCATTAATATGGAGCGGCCTTTTGATTTCAAAATGGCTGTGGAGAAAAAGTTGCTGGACGATGGACCCTTGACCATCTAGCATCAAAAACAGGTTGGTGAACCAGATGGGAATCAGCAATTCCAAAATGAATTGCTGAACCGATAAACTGTTTGCGCCAACCTCAAGCTCACAGAAATTCCCCGGGAGATCGGCGATTTCTGTAAGTCCTTGAAATCAGTAGATTGACATTCTTTCCAATAAAATATAAGGGGGTAAGGAATATGCATCTTGAAAGAGGTTGGCGCAAAGGGCTGTTTGTACCACTAACTTTCAATGCATATTCCCTTCCGCC # Right flank : AGGGACACGTTTTGGAAGGTTGTCACACCTGTATGGAAATGTAGATGTGAACATCAAACGCCAGCCTTACTGAATGGCCTTTCATTAAGTTAGGTTGCTGAGTGGAGAATGGACTTGGTGCCGAATTTCTTGGAGTAATAAAGAAAAATAATAGTAGAGCTTGTATCTTTTAAAAGGGGAATTTGTGATATAAATAAACCTTCTCTCCAAGAAGAATTTGTTGTTGAAGTATGGCAACAGGATGTTAGGTTTCCATAGCATTTTGCATCAAGAGAGGGTTAGACGAAATGATTAGAAAGTGTTTGGAGTCGGAACTGGAAACAATTTATGAAATTATAAATGATTCAGCCGTGGCTTATAAAGACAGGATTCCTGCCGACAGATGGAAGGAACCTTACATGCCCATGAATGAATTAAAGGAGCAGATCAGGGATGGTGTGGTGTTCTATTGTTTTGAAGATAAGGGACGCCTTCTTGGCGTCATGGGGATTCAGGACCGG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 860092-859342 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKJ01000001.1 Akkermansia muciniphila strain GP08 scaf-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 860091 31 100.0 34 ............................... AACAATACGTACCTTTTCGCAAGCCTTACATTTT 860026 31 100.0 34 ............................... TATGGGGTTATAGTCAATCATTTTCTTAGTTGTT 859961 31 100.0 35 ............................... CCCAAAATGGCCGTTTTGGCTCTGGATAGGGTAAA 859895 31 100.0 33 ............................... ATCATGGTGAATAGTAAGCAGGGCAAGGAACCC 859831 31 100.0 34 ............................... TCCTTGTCACGTCCCACAAAAGAGAGACAAGAAT 859766 31 100.0 33 ............................... CAAAATGTCAACCTTTCTCCTTGTCACGTCCCA 859702 31 100.0 35 ............................... ATGCATTAATGACGTACAGCACAAAATTATCAATG 859636 31 100.0 35 ............................... GCTGGAAAACCACACGTCCGGACGAACTCAACAAA 859570 31 100.0 36 ............................... TTAACTGGTAGTTGCATTTATAGCATGCAAAGAAAT 859503 31 100.0 34 ............................... GGAGCCAGTGTGTCCCCGGCTGCGTTGAAGAGTG 859438 31 100.0 34 ............................... CCGGGAGCCAAGACAAAGCGGCTTGTCCATGTCA 859373 31 83.9 0 ....T................A..A....TA | G [859355] ========== ====== ====== ====== =============================== ==================================== ================== 12 31 98.7 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCCCTGTAAGGAATATTCCGTCATTCATTCGTTAACGGGAGCCGTCCGCAAGGGCGGCTCCTTTTTAATGGCAGCGGAAACCGGAGGGGAATTCGGCTTCCGGCAATGGGGAAAACGGCGCGCCGCCCGGGAGGCCTGTTGTGTATGTGTCTCCATGTTGGCGGCTCCGGGGATGCACGGTTCTGTTTGAAGGAACGTGGAAGATGTTGCTGGACGCGGCAGAGGGGAACGGCTAGCATCAATGAACCAAGTTGAATGCAAGCCGGACCGGACGCGGCGAAGATGGAATATTACGGAATAACGCCGCGTCTGATGCCGCCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGCTTGCTGCAAGTGATTGGGAAATGGATATTGACAAAAGAATCACCTCTTATCGGGCCTGACCGTATCCGGCTTCCGCATCAGGTTGGCGCAAACCCCTTGCTGCGCCCTTGATGCTCAACCCGTATCCTCCAGGCC # Right flank : GTGCAGTTGTTTTTAATGATGTCTGCATGGTAAGGGAGGTGATTATTTTGATAAATGGTTATTTATTGAATATTCTTTTAAGGAGGATTTTTATGTTGGGGAGGACGCCGGATGAACAACTTTCCGGATGGTTTATTATGGTTTCCGGACAGCCTGTCCGGAAAAGGGAAGCAGGCAAGCGGTGTATTTCCTGCGGCATGGGATTTTTTTCCGCGTTCACAGTTTGTGATGGATGAAGCCGGAGCAATCCAATATAAAGATAAGATGCATATAGACTGGTTGAATGATTTTTTGGAATGGACGCCTATTTTGCTGATGGTGCTGGTAGCGGTCGTTTTTCTGGTGGCGCTGAAATGGAGAAGCGGCAGGATGAAGAAGTTTCTGGAGGAGTGGAAACGTAAGATCGTCCGGCAGGCGGAAGCCGGGAATCCCTCCGCCCAGTTCCGTCTGGGGCGCATTTACCAGGAGGGGGACGGCGTGGAGAAGGACCCGGACCGGGC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //