Array 1 2606425-2606748 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025017.1 Actinomyces sp. MAS-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 2606425 37 100.0 35 ..................................... CAAGCTGGGGCTGTGCCCAGCCTTTAAAGGGAACC 2606497 37 100.0 35 ..................................... GGCTCGACAAGACACGCCGCAAGCGGCTGCGTCCA 2606569 37 100.0 34 ..................................... ACGCCGAGCTGCCGGGCCCGAGCCAGGAACCACG 2606640 37 100.0 35 ..................................... TTATCGACCCTTCCGCTATAGAGCCACTGACTCAA 2606712 37 94.6 0 .............T......................T | ========== ====== ====== ====== ===================================== =================================== ================== 5 37 98.9 35 GTCAGAAGGCACCCCGCGCCATAAGGTGCATTGAGAC # Left flank : GCCCGCGATCTTCGGCCGGTTCCCGCCGGGGCAGCCGGGGCCCCTTCCCGCTCCGCCGATGCCCACCTCCCGGCTCAGGCCGCGCAGGCAGCCCACCGGGAAGGACCCCCGTCATCACTGAGGCCCGGCGGTTGCCCCACCGGCCGAAGCGGGCCATCCCCGGCCGACGTGCCGGGCACTCGCCGTCCCTGGTAGCACCAACCGATTGATCCGCCGAGGGCTGTGGATGAGTCGGTCTGGGGGCATCGAAGAGCGTGGGGGTGGGACTTTGGTCGCGGATATCGGATGTCTGATGTTGGCGGGGGAGGGTGACTTTTCCGCATGGTGTCGTTGGATTCCGGGTGACGGGGGCGCTGGAGGGGCGTCGCTGGCGCTGTGGCGCTGACCTGCATGGATGTGGTACAAAGGGGTCTGTGCCGGGGCGGTCTGGAGGGTGCTGACGGGTCGCCTGCACTGCGCCTCGTATCACTGCTGGTCACAGGGGGTGGTTCGAGGGGTGG # Right flank : TGCGTTGATGCGCTTCTGGTTCTCGGCCACCACCTGGTCAGAAGGCGCCCTGTGTGGGTCGGTTCTCTGCCGGGTCGGTCGTTTTCTGCTGGGTGACTTGCATTCTGCCCGTTGAGATCCGCCTGTCTGGGTCAGCGGGATGTGGGTGACCCAGCGAGATGCGGGAGACCCCGCGGCATAGCGCGTGCGCCCCTTGATCGCCGGGGCGACCGAGAGGGCCTCGACAGGTCTCCTGCACTGCGCCCATGGGGGCGGGCTCCTCCGGGATACCGTCATGAGGGCTATGCGCAGGCGTAGCGATCCGCTGTTCTTAGTCGGGTCGGGGAGCGGGAGCATCCTACGTCTAGAGACATTCACCTCGGTCGGTGAGCAGCTCCCTGCATGGTCTCTGGGGCGGGATGTTATTCCGTCCAGTGACAGGTGGCCCGCCAAAGACTGGATTCCCTGTGAGCGAGCCTTTCGTGTAGTAGGGTAATGGGGCGCTCTATGGTGTGCTCAGT # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAGGCACCCCGCGCCATAAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 2640192-2639798 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025017.1 Actinomyces sp. MAS-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 2640191 37 100.0 33 ..................................... GCTGACCTGGAGATATATCTCAGCAGGGAGAGG 2640121 37 100.0 33 ..................................... ACAACCGCGAAAACACCGGCATCGCTTCAATGA 2640051 37 100.0 36 ..................................... AGCTCTAACCCGTCCCCACCACCCGAAAGGAGGTGA 2639978 37 100.0 36 ..................................... AGCTCTAACCCGTCCCCACCACCCGAAAGGAGGTGA 2639905 37 100.0 34 ..................................... ACATCGGTTAGGAGACCCCATGCAGATCATCACC 2639834 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 100.0 35 GTCTCAATGCACCTTATGGCGCGGGGTGCCTTCTGAC # Left flank : TCCTGGCCATCGGGGCCGCAGTTGTGGCCCGGCCAGAGCATCTTCCAACGCCCGGCCGAGGACGAGGATCCTCTTGCGGGCCAGGCCGTAGCGGTGGCTGCCGCTGTTAGTGGAGACCGGCCCCCGTTCGCCGGGTTGGCAGCACTTCGCGGGGTTGTCTGCAGATCGCAGGGCTTGTCAGTACTTCGCACCCCTGGGACCCCTCCGATCCACCGACAACCCCAGCGATCTGCAGACGACTCAGCAATCCGCACATCTCCCCCGACCAGCCTCAGACCAGAACCCACACAGGAATCGTCTCCGCCATGAGGGGCGCACCCGCGGTACAGCGGACTCTCCCGCGTCTCGCTGGGTCACTCGCATCCCGCTGGGTCACATAGCCCGATCTCACCGGGCAGGATGCGGATCACCCAGCAGAGAACGACAAGCCCAGCGGAAAGCAATTGTGCGCGGGCGCCTTCTAACTGTTCTACAAGTGGGTGCAGCCCATGTGGAACAAG # Right flank : CCACCCCTCGAATCACCCCCTGTGACCAGCAGCGATACGAGGCGCAGCGCAGGCGACCCGTCGGCACCCTCCAGACCGCCCCGGCACAAACCCCTTTGTACCACATCCACGCAGGTCAACACCACAGCGCCAGCGACGCCCCTCCAACGCCCCCGCCACCCGGAATCCAACGACACCATGCGGAGAAGTCCCCCTCCCCCGCCAACATCAGACATCCGATATGCAGGACCAAGGTCCTGCTCGTCGCCCATCCCGCCAGCCCGGCCGGCACTCCCGCCCGGACCTCAGCCCAGCGGCGGGAACTCCTCCAGGGAGAAGACCGACTCCACCGGCACCTCGAAATAGCGGGCGATCCGCAGCGCCAGGTGGAGGGAGGGGGCGTACTCCCCGCGCTCCAGGTAGCCCACGGTCTGATAGTGCACGCCCAGGGCCTCGGCGAGCTGGCGACGGCTGACCCTGCGGTCGGCGCGCATGACGGCGATGCGGTTGTGAATGGCGTC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATGCACCTTATGGCGCGGGGTGCCTTCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 3 2896984-2897667 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025017.1 Actinomyces sp. MAS-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 2896984 37 97.3 36 .............T....................... TTTGCCAAGCAATACTGGACTCCCCTAGGATGGTGT 2897057 37 97.3 34 .............T....................... GCCAGGCGGCTGCCCGGCGAGCATCCTTCGCCGC 2897128 37 100.0 34 ..................................... TTAGGCTACGTGGCTGCGAGACGGTGTTGTGTAA 2897199 37 100.0 33 ..................................... GCCGACGAGGAACGCGCCGGTAGAGGGCTCGGA 2897269 37 100.0 35 ..................................... TCGCGCCAACCCTCCTGGCGGCGCTCCTCCTGGAG 2897341 37 100.0 35 ..................................... TTGGTGGGCATCGCCAACGCCGATACAAAAAGGGC 2897413 37 100.0 35 ..................................... TTGGTGGGCATCGCCAACGCCGATACAAAAAGGGC 2897485 37 97.3 36 ...................................G. CAGCAGGGTCATCATCAGCACGACTATGACGACGAC 2897558 37 100.0 36 ..................................... AGAGCGGCCGCCGGCGCCATGGCCGGCAGCTGGCAG 2897631 37 91.9 0 .........A......................A...G | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 98.4 35 GTCAGAAGGCACCCCGCGCCATAAGGTGCATTGAGAC # Left flank : GGAGAGCTCTAGGTGCCGGGGGACGTACATGCGACGATGCTAACGGCGGGCGGTGGGTCTCTGTGGGCGACACGAGAGTCATCCCAGGAACTGCCCAGGTAGGAGCCGGGGGCGGGCCCTGCCGGGGCCCCGGTGCTTCGCTGGGTCACCCGGGCGGAGCTGGGCATCGACGGCGTTGTGGCGGGATGGGCGCCGGATGCGTATAGGTGTGGGTCTGGAGGGGCTCTGGAGGGAGCGCGAGGGCACTCGCAGAGGAGTTTGTGGGACTTTAGTCCTGTATGTCGGATGTCTGATGTTGGCGGGGGAGGGTGACTTTTCCGCATGGTGTCGTTGGATTCCGGGTGACGGGGGCGCTGGAGGGGCGTCGCTGGCGCTGTGGCGCTGACCTGTGCTGATGTGGTACAAAGGGGTCTGTGCCGGGGCGGTCTGGAGGGTGCTGACGGGTCGCCTGCGCTGCGCCTCGTATCACTGCTGGTCACAGGGGGTGGTTCGAGGGGTGG # Right flank : GGGATGAATGCTGTCTGCGTTGATCGTGTTATTTGCGGCCTCTTGCGAAGAAGGGAGAGATTGTCATGATGTCGCCGCCACGTCGGCATCATTCGCGCCGAGTGCGCTCCGACAGTGCCGAGAGCCTGGCCAAGGATGCCCTCCGCCCGCAGCTGCGGATCTCGGGCCAGTACCTGGGCGTGTCCCTGTCGGAGTTCCAGGCGTCCCGCATCATCGACTCCGTTCCGCAGTCCTGGGAGCAGGACGAGCTCTTCATGAGCGCCACCTCCGTTGAGAGCCTGAAGAAGTCCTGGCGTGTGGTCCTGGCCCGTGACGCCCGTGATGGCGAGTTGCGCCACCAGACCGAGCAGATTGCCGGCCACCTCGATGAGGTGCTCGCCGAGCTCTCCCGATCCCTGCGGGACGGCACCTTCCGCCCAGCGCCCCTGGCCCAGGTGCGCCTGCCCAAGAAGGAGGAGGGCGATTACCGCACCTTGGACATCCCCTCGGTACGGGACCGC # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAGGCACCCCGCGCCATAAGGTGCATTGAGAC # Alternate repeat : GTCAGAAGGCACCTCGCGCCATAAGGTGCATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 4 2900381-2901065 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025017.1 Actinomyces sp. MAS-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2900381 37 100.0 35 ..................................... AATCGGCGTGTCTGCCTTTGGCGAGGCAAATAGCC 2900453 37 100.0 34 ..................................... ACAACACCATATCTTTTCCCGGGTTACTGCCGGT 2900524 37 100.0 33 ..................................... TCCATGCAGACGGAGGGCTCGATGCGCACGAGC 2900594 37 100.0 37 ..................................... TTGGTCATGACTGACCTCCTCCTTCAAAAGGTCCTCT 2900668 37 100.0 37 ..................................... TTGGTCATGACTGACCTCCTCCTTCAAAAGGTCCTCT 2900742 37 100.0 37 ..................................... TTGGTCATGACTGACCTCCTCCTTCAAAAGGTCCTCT 2900816 37 100.0 33 ..................................... TGAGCCTGTGTTCGCCAGTGTCCCGGTTGTAAT 2900886 37 100.0 33 ..................................... TGAGCCTGTGTTCGCCAGTGTCCCGGTTGTAAT 2900956 37 100.0 35 ..................................... TGGGTCGATCGAGTACCTCACGACCACGTCAATGG 2901028 37 89.2 0 ......................C..AC....G..... | G [2901059] ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 98.9 35 GTCAGAAGGCACCCCGCGCCATAAGGTGCATTGAGAC # Left flank : CTGGGGGTACAGGATTCAGGAGTCCGTCTTCCAGATCAGCCTGGAGGAGGCCGAGCTGGAGGGGCTCATCGAGGAGATGGAGGACATCATTGAGAGCACCGACGACGTGGTGCATATCTACCGCCTGTGCCGCCCCTGCCGAGATCGCATCCAAGTGCTCGGCACGCCGCCGAGTCAGGATGACGGGGGTCTGTACCGGGGCCTGTTCTGAGCGTGGAGGACGACGGGGCGGGCGTGGGGACCCGCCGAAGAGCACAGGAGTAGGACCTTGATCCCAAATATCAGATGTCTGACCTTCGCGTGGGAGGGGGACTTTTCCGCATGGTCTCGTTGGATTCCGGGTGGCGGGGGCGGTGGAGGGGCGGCGCTGGCGCTGTGGTGCTGACCTGCGTGGATGTGGTACAAAGGGGTCTGTGCCGGGGCGGTCTGGAGGGTGCCGACGGATCGCCTGCGCTGCGCCTCGTATCGCTGCTGGTCACAGGGGGTGATTCGAGGGGTGG # Right flank : CCACGCTGCGGTGCAGGTCGGCTTCTAGCCGTCCCCCTGGAAGACGTCATGCTCCGGGGAGACTCCTGGAACACGAGAGGTGCCGCGGGAGCCTCGGCGATGGGGGCCGATCGACTCGGATGCTGCATGCCTTCAGGGCCTGATGGCCGGCTGATCCGCATGATTCCGGGGATGTCCCGGTGGATGGTCGGGCAGTGGGGGCTGAAGATGTGCGACGAGGCGGTCCGACGGTCGGGGGTAGCGGGCGGGCGCCCCGAATCGGCAAGGCCGCCCGGCAACGTCCGGAGTGTTATGACCTAACAAAGATGGGCTGGCCCGGCAGGGGTGAAGGAGGCAGTGTCAAGCCCTGCCCTGGAAAAAGCCGGGAGCGCACCACTCATTCCGAGATCAATCAACGAAAATTACGCAAACATTCAGTCCGTTTTCAGCAAGATGTCAGATGTCCTGTTTCTGGCGAAATCCCGCCGATCAAGGGAGTCCGCCGGGGTGAGGAGCCGCTA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAGGCACCCCGCGCCATAAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //