Array 1 1438-1588 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRC01000053.1 Lactobacillus crispatus strain UMNLC12 crispatus9E7S25171, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1438 29 100.0 32 ............................. TGTCCAAACCTTCTACAATTCGTTGTATTTTG 1499 29 100.0 32 ............................. GGCTTATGGCATCAGTCATGGCTTTTGACGTT 1560 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTATTCTCCACGTGTGTGGAGGTGATCCC # Left flank : ATATTTGAATGATAAAAACCTTGAGCAATCTATCTGGATTCTTTTAGATAATTTAAATTTATTAAAATTACTTTTAGTTGCTGAAACTGATTATAGTCATTTTTTTATAAAGTTGCGAAAGTTAAATGAAAAATTTAAAGGTATTTCTAAACCATATCATCATATGTCTAAAAAAACACATACTGTTAATCAAATGAGAAGAGCAATTAATGCTGTGATTGATAATATAGTTGGTGCAAACAATATGAAACTGAAGGATTTGCATGATGATCAGATTATTCAGATATATGTTGAAGCCAGTGCGCTAAATCAAAATTGGTTAAAGCTTACTGGTAACGAGGGGGTAAGGCATCGAAAACGAAAAAAATCAGTCGGAGTTTATTCAATTGAGTTTGGATATTTAGACATTGCTTACATGTGTTGAAAAATGGATCTTCTTAAAAGTAATGAAAAATGTTATGATTTGAATTGAGGATCATTGATATAATGGGATTTGTTTA # Right flank : TCTTCGATTTGTATAAATATAGAAATTTGTCGGTATTCTCCCCGTATGTTGGAAGCATTTTAAACTAAGTGTATAATTTTTTG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18985-17551 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRC01000029.1 Lactobacillus crispatus strain UMNLC12 crispatus9E7S2514, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18984 29 96.6 32 ............................C ATCCCCTTAGCGTGCAAGTATTCAGCTTCTTT 18923 29 96.6 32 ............................C TGTGCCTGGCCCGTCCCACGTTGGATAAACCT 18862 29 96.6 32 ............................C AAAATAGCTTACTTAGGAACTTTAAAAGGCGA 18801 29 100.0 32 ............................. GTTTAACACAGCGCTTCAGCAATTTGTTATGG 18740 29 96.6 32 ............................C GTGATTTAAGAGAAACGTTCGAAACCAAGAAA 18679 29 100.0 32 ............................. AAAGTTCGATTGAGATCATCATCAAATTTACC 18618 29 100.0 32 ............................. AAAATAGACGTTAACCTAGTCCCAAACATTTG 18557 29 100.0 32 ............................. GGGAACGTGGTGGATTCGATGCACAACATGCA 18496 29 100.0 32 ............................. ATGACTACGCTTACCGTTCCGACCGTGAAGTT 18435 29 100.0 32 ............................. GTTCTGTCAATCCGTATAAATTAACCCGTCCG 18374 29 100.0 33 ............................. GTTTGTGTTATTGTAGCGGTGTTAATCGCTGCC 18312 29 100.0 32 ............................. AAAGCGACTGTATGAGGTTATGATCTATCTTA 18251 29 100.0 32 ............................. GATGTTCCGCAGAATGGGCAAAAACGAATTTT 18190 29 100.0 32 ............................. CAGTATTTGACAGAATGCAAGAACAAGCTGAA 18129 29 100.0 32 ............................. GACACTGACACTACGGCTGGCGGTTTTGCAGG 18068 29 96.6 32 ............................C CAGCCAAGAATTAGCCGGTATTAACAATATTC 18007 29 100.0 32 ............................. TTATCGTTCTGATGGAAAAGGAGATATTGTTT 17946 29 100.0 33 ............................. GAACATATGTTAGGTGTTTGGGACTTTGAAGAA 17884 29 100.0 32 ............................. GTAAAAATTTACATGCTGGGTAACACAGTAAA 17823 29 96.6 32 ............................C TCATCAAAAATAATTGTAGTTACTTTGGGATA 17762 29 100.0 33 ............................. ATATGTTTCTCGTATGATATTTGCTAAAGATAA 17700 29 96.6 32 ............................C CATCACAAAACATAGTGAAGCAGTTACACCCA 17639 29 96.6 32 .............A............... ATCTCTAGTAGCTCCTACAAAAACATCAATAT 17578 28 82.8 0 .............A.........-..TGC | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTTTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTGAAGCGAATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : TATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGGAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGCACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAGGACCTTGAACAAATTAAAAAGTATTTTGGGCAAAGAAAACACGGAAAAGATTGATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGTACTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 51280-49723 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRC01000029.1 Lactobacillus crispatus strain UMNLC12 crispatus9E7S2514, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 51279 29 100.0 32 ............................. GTAAGCCACTAATACTCGGACATCATTTAGCA 51218 29 96.6 32 ............................C AAGCTTTTGCGGGTGGGTTTACGCACGCTAAT 51157 29 100.0 32 ............................. GAATAATTTATTCAACGCACTAACAGATAAAA 51096 29 96.6 32 ............................C AAGTGAATAATCTAAGTCCCCGACCATTTTAG 51035 29 100.0 32 ............................. GTCTACCTATGAAGAGTTAGTACAGAAAAATG 50974 29 100.0 32 ............................. AACGATATTAACCAAGATGTTAAGCAAGATGC 50913 29 100.0 32 ............................. AGAAATGTATTAAAACCTCGTTTCGAGTTTGA 50852 29 100.0 32 ............................. GTCCTTGGTAGTCTTTGATGATACATTCTTTT 50791 29 100.0 32 ............................. GAACGTTTAGAGTATTATTGCCAGCAGTATGG 50730 29 96.6 32 ............................C TACACCAGCCGCTATTGATACTAATGACGTTA 50669 29 100.0 32 ............................. TAAGTCAAGCGATCGGAATTATCTGTGCTTGG 50608 29 96.6 32 ............................C GATAATTATATATTTTTTGTTTGTCACGGTGT 50547 29 100.0 32 ............................. AGGCGATTCCGCAATACTTGCGAACCTATCGC 50486 29 100.0 32 ............................. ACACCAAGGATACCAGTTTTGGTAACTTCAGT 50425 29 96.6 32 ............................C ATCACAACATTTTTAAGGAGTTACACCCATTC 50364 29 96.6 32 ............................C ACCGCCAGCATTAAACAAGGTACTCATTTTAG 50303 29 100.0 33 ............................. AAACTTACTGGCGGAGATTTTTATTTTTGGAAA 50241 29 100.0 32 ............................. CACTAGAATCAGATATAACTTTAACTGTATTT 50180 29 100.0 32 ............................. TTTCGCTAGTTTTCTAAATAAGAAGCCCGTTA 50119 29 100.0 32 ............................. GTTCGCAATTGCGAATTGCTGATCGGGCTCTT 50058 29 100.0 34 ............................. TAAAAATCATTCATACATTGTGTGACTGCTGAAA 49995 29 100.0 32 ............................. AGCTTGCTTTGTAGCTTGTAACGTTTTTTCGC 49934 29 100.0 32 ............................. GCACTTGGTCCTTGCGCCTTTAAATTGCGACT 49873 29 96.6 31 ............................C ACAAAATCCAGGTACTACTTTAATCCATGGA 49813 29 89.7 32 ...........AC.....A.......... AACTGATTTAGTGGGTGCAGTTATGGATTGAG 49752 29 75.9 0 ...........AC.....A.TC..T.A.. | T [49735] ========== ====== ====== ====== ============================= ================================== ================== 26 29 97.8 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTCCATTATAAAAACAAACCAGATAAGTTCTGATTTTTATCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATGCTTTTGATTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGATAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTCTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : GTCCTGGAACGTACAGAAAAATAGCTGATAAACCGCGTCACGACGGCATTTGTTAGTGATTGAAAGTGTACTTTTTTCTTTCTGAACGATTGGAATTAGTACACTTTTTCTATTTGAAGCTGGCGGGTCGAGTGTTCTATGTCCTATTTCGATAGTCGAGTAGACGATCGTTCAGTTTGGCAGGTCGTATTGATTATGGTAGTGAAAGTAGGAATAAAGATTGATATAACAGCATTTACAGAGGGCGCAAAAATCAGTCAATTTAGCGTTGAGAGTTGAGTTAACGAGTATGCTATTAAATTTTGACTGTTTCGATTAAAAAATAGAAAATCTGCACAACGGTAGTTTACTCGACGTATAATATTAATATTCCTGAAGATTATTAAGGCGGTAAACAAGATGGCAAATCGACAAATTGAAATAGAAAATAAAGCGATGAAAGAGATTCTTATCGCAATGCATAATTTGGGAGGTCAGGTTACGAGAAAACAAGTACTACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 54342-54008 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRC01000029.1 Lactobacillus crispatus strain UMNLC12 crispatus9E7S2514, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 54341 28 89.3 33 ............TA.........C.... CAGTTTAGGTACCATTTTTTGACGATCAAAATC 54280 28 100.0 34 ............................ TGACAAGGTTGACCAAGCCGTTAAGACCATGCAA 54218 28 100.0 33 ............................ TTAAAATAATTAAGGAGGGAACTCCAAATATCG 54157 28 100.0 33 ............................ CAATTTCTTCCTTCGACATGTCCTTAAGAGCAT 54096 28 89.3 33 ...........ACA.............. TGACAGCTCTGCTGTAGTGATCGAATCAGACAA 54035 28 71.4 0 ...........ACA........CT.AAT | ========== ====== ====== ====== ============================ ================================== ================== 6 28 91.7 33 GTATTCTCCACGAGTGTGGAGGTGATCC # Left flank : CGGTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGCGATGCTGATATATTGTGGATCATTTA # Right flank : AGCTGCTCTGAAAAATATTTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAAGAAAAAACCACAAATCAAAGTTCACTTCAA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGAGTGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //