Array 1 47988-53299 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZDO01000007.1 Moraxella osloensis strain CCUG 350 contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47988 28 100.0 32 ............................ GTTAGCAAAAGTTTGAGTGATAATCCCGTCTA 48048 28 100.0 32 ............................ ATTTTCGTCAGGCTTTATGCGTCTAACGTCTA 48108 28 100.0 32 ............................ TAAATAATCGGTTTTATAGTTACCTTCAACAG 48168 28 100.0 32 ............................ ACGAATTACAGCTATACAATGCGTTTTGTCAT 48228 28 100.0 32 ............................ TGATATCGAAGGTACGCCAGTTCCCACGGATA 48288 28 100.0 32 ............................ AGTATCATCAGCGACCCAAGCTATGAAGATGA 48348 28 100.0 32 ............................ TTAAGAGATTAAAAAGCATAAAAATAAAAGCA 48408 28 100.0 32 ............................ TAGGATTTTTGGTATTACCCCTAAACGTGATT 48468 28 100.0 32 ............................ TGCAAAAACAGCGCGAGGTCTTATATACCAAC 48528 28 100.0 32 ............................ ACTTGTGTTGTCGACCGCAAAAATCATGCTGT 48588 28 100.0 32 ............................ TGTAGCGGTTTAAATCGGCTGTTAGCTTGATA 48648 28 100.0 32 ............................ TGCATATTTTGTCGCATCGCCAACGGCTGTTA 48708 28 100.0 32 ............................ ATCGCTTAGACTGCAAGCCAAGTAGTTCGAAG 48768 28 100.0 32 ............................ TAAAACAGTGATTGCGCCCAATACTGCGCCAG 48828 28 100.0 32 ............................ ATTGACAGCGTTATACTCCAATGCCGTGCTAA 48888 28 100.0 32 ............................ CTTTTAATTTGCGGTTAAGGTCATGAGTGACT 48948 28 100.0 32 ............................ TAAGCTAACTACACACAGGAGCGTTATCATGC 49008 28 100.0 32 ............................ TGTTTCTGCAATCTCTTTAGAATTAGCCTGTT 49068 28 100.0 32 ............................ TCAAGTGTGCTGGCGTCACCACTTTTTCTGTC 49128 28 100.0 32 ............................ ACAGGTACAGCTTACCGCTTTGTATCCGATAT 49188 28 100.0 33 ............................ ACGCTAGGTGTTTGCTCACTGGTAAGCTGTCCA 49249 28 100.0 32 ............................ TTTTTTGTTGTCTGAAATTTAAGGATTGAACA 49309 28 100.0 32 ............................ AGTCTTTACCCCAGTTAAAGCGTAGCGGTGCA 49369 28 100.0 32 ............................ GCCATCACAGGCGGTTTTTTTATGGGCTAAAA 49429 28 100.0 32 ............................ TGCATTTCAATGAGCCTATAATCATAGTCTAG 49489 28 100.0 32 ............................ CATCAATATTCACCGATACTCATCAATACTCA 49549 28 96.4 32 C........................... ACGAAGCGAATACCACGGCTTGTTTATCGAAA 49609 28 96.4 33 C........................... TTGTGCGCTTTGTCTTTGCTAAACTCCCAAACT 49670 28 96.4 32 C........................... CAATCGGGTGCGCCTTTGAATACGTCTTGTGT 49730 28 96.4 32 C........................... GTAGTGGCTGGGTTCGTGATAAGCACAGTCCG 49790 28 96.4 32 C........................... GATACGAGTCGTTGGCAGTAAGTCATAAGTAA 49850 28 96.4 32 C........................... ACGTTTGGGGCTGGACTTATCGAGAGATATCA 49910 28 96.4 32 C........................... GAAAAGGTCATGATTGACGCAGGTGGTTGGCG 49970 28 96.4 32 C........................... ATCATGCACCTGCGCTATGCTAGACAGTCTTT 50030 28 96.4 32 C........................... AAAGGCTTGGTGAGTGGTTTAATTCATCACAC 50090 28 96.4 32 C........................... AGCATGACGAGACCAGATGCCACATTCCTTGA 50150 28 96.4 32 C........................... ATCAAGTTTTATTGAAGCTGCTTGTAACTGAC 50210 28 96.4 32 C........................... ACAGTCAAACCGCGTTGAGCATAAACATTTTG 50270 28 96.4 32 C........................... TTTTTCGCCTTGCTCATAGATAAATGTTTTTT 50330 28 96.4 33 C........................... AGGCATAAAAAACCCTGTTAGCGTGAACTAACA 50391 28 96.4 32 C........................... ATGCGCCCACTTAATGCTTTATTCTCATCCGC 50451 28 96.4 32 C........................... ATAAAAGGGCTGTCACCTTTGCCTGTACCACT 50511 28 96.4 32 C........................... AAATCGGGGGAAGGCATGAATACTGGCTTTCA 50571 28 96.4 32 C........................... GTTTCGGGAGAAAACAAATCTTCCCGATAATA 50631 28 96.4 32 C........................... ACAATGAAGTATGTTATTCGTGTGCTTGAGCG 50691 28 96.4 32 C........................... ATCAGGCTTTACAATCACAATAATTTCCAGCT 50751 28 96.4 32 C........................... TTCCCCCGATTTGGGGACACGAATAAAATCTA 50811 28 96.4 32 C........................... TATAACAAATAGCTGCCTAATAAGTTTTGTAA 50871 28 100.0 32 ............................ GATATCACCGTCCCACTGTGCGCCACTGACAA 50931 28 100.0 32 ............................ ATTTGCGTTGCAGGGTCTTGGATAATTGACAA 50991 28 100.0 32 ............................ GACAAAGTTATGACGCTGACAGTATGGCAGAG 51051 28 100.0 32 ............................ TATAACAAATAGCTGCCTAATAAGTTTTGTAA 51111 28 100.0 32 ............................ GATATCACCGTCCCACTGTGCGCCACTGACAA 51171 28 100.0 32 ............................ AAAGGCTGGTCGATGAATGGTACGCGCTGCCA 51231 28 100.0 32 ............................ AAGATACCGCAGACAGTCTAAACGCACTTATA 51291 28 100.0 32 ............................ AGTCTGCTCAACCTTACTATCAACCTTCTGCT 51351 28 100.0 32 ............................ AAGCATCGCATTTTATGTTGTCGTGAAGTGCA 51411 28 100.0 32 ............................ AATATCACCGTCCCACTGTGCGCCTGATACAA 51471 28 100.0 32 ............................ ACTTTAGTTGTGGTGCAGCATCCGCAGTTGCC 51531 28 100.0 32 ............................ ATTGCGCTTGATAGTTTTAATACCTACAACTT 51591 28 100.0 32 ............................ ACCGTCAAAAAACAGCAAAGGTGAGCTACCTA 51651 28 100.0 32 ............................ AAAGCGTAAACCAAAACGCTCGATACTTGCGG 51711 28 100.0 32 ............................ TTAGCGAGTTTCTCATAATGCACAGTATCGAA 51771 28 100.0 32 ............................ GCATTAAACACCGCGCAGAACGTGGTGCAAAA 51831 28 100.0 32 ............................ TAGCACTTTGTTTGTGCAGACAGTGGACGGCA 51891 28 100.0 32 ............................ GCCAAGTCTAAATGCTTGTAGTGCCAATTCTT 51951 28 100.0 32 ............................ AGTCATTGATGAATTGTCGAAATCCGACACCG 52011 28 100.0 32 ............................ TGTACCTGTGCCGCCAATAAAAATCACGTTTG 52071 28 100.0 32 ............................ CTTAAATTCGCAAACAGCAAGAGGAGCCCAAC 52131 28 100.0 32 ............................ TAGTTTTTGAGGCTAGGCTATCATTGCAAAAT 52191 28 100.0 32 ............................ TAGACTGTGGGGTTTTTCTTGCGCTTTGAGTT 52251 28 100.0 32 ............................ TATAGTGACGCTACCATCCGCATTAACTATAT 52311 28 100.0 32 ............................ TTCAACATCATCGTCATCTATATTAAATAACT 52371 28 100.0 32 ............................ ACGCCTATTGCAAAGTTGTCGTACTCGGTCAC 52431 28 100.0 32 ............................ TAAAAACTCCTCAATCTGCTCAATCTGCATAT 52491 28 96.4 32 .............C.............. ATTATCTGTAGTGCTAGAGTGGTCTTACCTAA 52551 28 96.4 32 .............C.............. TAAGCGTTGGGATGGTAACGCATGGGTTGAAG 52611 28 96.4 32 .............C.............. TTGCCCCAGCGCATGTGTCGTTTGCCGAAATG 52671 28 100.0 32 ............................ GCTCGCTATCTCGCAAATAACTGGCATTGCTT 52731 28 100.0 32 ............................ GACAGCAAAAACAGCCAAGGCAGTCACTTTAG 52791 28 100.0 32 ............................ GAGATTGAATTATCCAAAGCCGTAGAGCCACA 52851 28 100.0 32 ............................ ACCACGCAAAACACCGATGCTCACTGAGCCTT 52911 28 100.0 32 ............................ TTAACGCGCTCGGTCTTGCGATACCACAACTC 52971 28 100.0 33 ............................ TCATGGCTTGTTCAAGGTTCTATATCAATCTAT 53032 28 96.4 32 .............C.............. TTTTGATGAACCCAATGAGGACGGTAAAGTTA 53092 28 96.4 32 .............C.............. TTATAAAAATGGTTGAGATTGATACCGATTTT 53152 28 96.4 32 .............C.............. TATATGCAATATATCGTAAAATTTTAAACTCA 53212 28 96.4 32 .............C.............. TTACGAGTCTTTGCCAACCTCATTTACTGGCA 53272 28 75.0 0 C.........G........A..G..TCT | ========== ====== ====== ====== ============================ ================================= ================== 89 28 98.5 32 ATTCACCGCCACATAGGCGGCTTAGAAA # Left flank : CGTTTGATAGATTATGTACATATCAAACGTATCCAGCCTGTACCCGAAGTGCATGGGCATGTGGTGGTGAGGCGTTACCGCTACAAGAATTTTGACAAAAAGGTGGCGGAGTTTGCCAACTTTAAGGGCATCAGTGACCAAGAAGCGTTGGCGCATTGTCTTGCCCATAAGCGTGCTATCAAACACTACCCTTTTATCACCCTAAAAAGTCAAACCACCCAAAATGACTATAAACTGTCAATTTGGCAAGAAGTGGCGAAGGATGAAAAAAGTGGCAACTTGAATACCTATGGGATGAATAATCAATCAGATGCGGTAACCGTTCCCCACTGGTAATCAACCTTGCCGACAGACTATAAGGGTGAATAACCCTTATTTTTGACTCAATAAAAATAGGTATAAATTTCAATCAGTTATATCCAGGCAGAAAATGTAGGGTAAAAAGGGTATTTTTACTTGGTAAGCCTTGCTATAACTGCTTTTTTTGGGATAAAATTCCG # Right flank : TTAATTAGTAAAACCGTAAAGTTTATTTATTTTTACTAAAGTGACCAAAAACAAGTGGGTGTGAAATTAAAAGTCTTAAAAAAATGCGTGGTCACCAAATGGTCACCTTTTGGTCACCGTTCAATTTCTGTAGTAAAAAAGGTGCCCAAAATCACAAAAGTGGTCAAAATTTCAATTCTCGAAAAACCACGTAAACACTTGATATCACTGCAATAAAAAAGCCCCAATCAATCGATTGGGGCTTTTGGAATATGGTAGGCATAATCTGACTCGAACAGACGACCCCCACCATGTCAAAGTCGCTAGACCAATCTACCCTATTTGATATTAATGTACTTTAATACTCAAAGCTTTGATACGAGTGGGTTTAACTAAGCTTACAAGAATAACATTAATGTGATTTAATGACAATTAAGAAAATTATCTTGCAGTTTGGTCACGCAATATTGCGTGTTTTTAACCCCCACTCTTCTGATGTTTTTGATGGATAAAGCTCAAAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACCGCCACATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACCGCCACATAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 14458-23130 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZDO01000015.1 Moraxella osloensis strain CCUG 350 contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14458 28 100.0 32 ............................ GCCTTCTGACGTAGTTTGTTGGTTTTGACAGA 14518 28 100.0 32 ............................ TGCTGCTGGTGCTGGCTATGCAATTGCTGGCT 14578 28 100.0 32 ............................ GATGAGCTCAAGGCGATTTTGACAGAACGTAA 14638 28 100.0 32 ............................ ACTGTCCTGTTTCGACATCGGCAACATAAAAA 14698 28 100.0 32 ............................ ATGCAAAAACAGTTTACAAAGCAACTGGGCAA 14758 28 100.0 32 ............................ AACTGCTCAAGCTGCTGGGTGGTCGTTTGGTG 14818 28 100.0 32 ............................ GTAAGAAATAGCCCCACGATTACCCCAAGACG 14878 28 100.0 32 ............................ TATCCCCAGCGACAAGATTTTTTTCGGTAAGC 14938 28 100.0 32 ............................ TTTGAAAATACAAGCATTTATTATTTCCGCTT 14998 28 100.0 32 ............................ GCCCACGTTATCGACTTTATCACCAACGCCAA 15058 28 100.0 33 ............................ ACTTGGTCGCCAGTGGCTACAGTTTTATTGTCA 15119 28 100.0 32 ............................ TTGATATGTCATTGGGTGAGTGCAAACAATAT 15179 28 100.0 32 ............................ AATTTATACAGGTGAAGAAAATGACTAATAAT 15239 28 100.0 32 ............................ TTTATCACCCCTTTATCATAACTGAAATAGAA 15299 28 100.0 32 ............................ ACAGCGACAACGACGACGACGACGCAGGAGGA 15359 28 100.0 32 ............................ TCGATTGGTTAACCTTTACCGTTCATGACACT 15419 28 100.0 32 ............................ TTGCTCTGTAACCAACGTATTACTGCTTGACT 15479 28 100.0 32 ............................ GTCAAAGATGACGCTTCTATCAAATTGCAAGC 15539 28 100.0 32 ............................ AACAAACCCACAAATAGATACATCATCAATCA 15599 28 100.0 32 ............................ TTATTTCTATCCAAATTAATTTTATTTGATTT 15659 28 100.0 32 ............................ CAGAGCGCGGCATTGCTTCACGTCCAGATTAA 15719 28 100.0 32 ............................ GCTTGAATTCGGACGAAGCCTTGTTGCGGCTC 15779 28 100.0 32 ............................ GCTTGATATCACGTTAAAACGAGTTGTAGTGA 15839 28 100.0 32 ............................ CGCCTGTTGGCTCTATCTTTATGTATGATGAA 15899 28 100.0 32 ............................ TATCCCCAGCGACAAGATTTTTTTCGGTAAGC 15959 28 100.0 32 ............................ TTTGAAAATACAAGCATTTATTATTTCCGCTT 16019 28 100.0 33 ............................ GCTCAAGATTAAACTCTTGATAGGTTTTTTTGC 16080 28 100.0 32 ............................ ACCCACAGCATCGACTTTATCTCCAACGCCAA 16140 28 100.0 32 ............................ AAACAAGACCAGATACAATATAACCAGCAATG 16200 28 100.0 32 ............................ TTGCCATGTCCGTTAGCGGCAGTAACTAAAAT 16260 28 100.0 32 ............................ ATTTTTATCATGGGATAATGGGGAATTATCAA 16320 28 100.0 32 ............................ GCTTTGCTACTGACATCTATCCATACCTGAGT 16380 28 100.0 32 ............................ AGTAATAGGTTTTGTTCATGCCTTGTCATGGC 16440 28 100.0 32 ............................ ATTAACAGATTAACGCCTATCATTGCCATATT 16500 28 100.0 32 ............................ TAACCAAAAATGGCTATCCCTCGAATCTGTGG 16560 28 100.0 32 ............................ CTACATTATCTAAAACGACTTGATTAGTTTGG 16620 28 100.0 32 ............................ ATTGTCTATAGCTTGCTGTATAGCTTGATTGA 16680 28 100.0 32 ............................ TAAAAAAAATTACATAAAGAAAAATTTAAAAA 16740 28 100.0 32 ............................ GTAAAAAAAATGCCTAACAGCGTAAACCGTTA 16800 28 100.0 32 ............................ AACAAATACTAAATAATGCAAAATCAGGTGAT 16860 28 100.0 32 ............................ AAATCCAATCATGAGCCGTCATAGCAATACCC 16920 28 100.0 32 ............................ ATGTAGCGCACGGCTGCTTTGTTGCGGATTTC 16980 28 100.0 33 ............................ ATCACCCAATTACCTAGCTAAAGATAGCGGTCA 17041 28 100.0 32 ............................ GTATATTGCAAGGCGCAAGATATGAAGAAGAT 17101 28 100.0 32 ............................ ACAGAGCCACAGGTCAAGCGCACCAAAGCCGA 17161 28 100.0 32 ............................ CAAATGATTTAGGGCGAAATTGGGGGTTTAAC 17221 28 100.0 32 ............................ ACAGCGCAAGAATTGATAGTAATATCTCATCT 17281 28 100.0 32 ............................ CAAATGATTTAGGGCGAAATTGGGGGTTTAAC 17341 28 100.0 32 ............................ AACCAAAACACCGCCTGTAAATAGAAGTATTG 17401 28 100.0 32 ............................ TTGATAGCCTTTTTGTCTTTGCGTAACTCATT 17461 28 100.0 32 ............................ GCTATTAGCCAAAATACTAATGTGCATATCAA 17521 28 100.0 32 ............................ CTAACGTGACATTGTAGGTATAGCCATTAACA 17581 28 100.0 32 ............................ ATCATGACCGCATCAGCCATATTTGGTGATGA 17641 28 100.0 32 ............................ CATACCGCTAACTAGCGATGTAAGGCTGTCAG 17701 28 100.0 32 ............................ GCAAGTACAGCCGAAACCAGCAGCAGCAGAAC 17761 28 100.0 32 ............................ TATCGGCAGTGGGGCGGGCTTGACACAGTTAC 17821 28 100.0 32 ............................ CCGAGCGGTCTAACTTGCTCAAGCGTGGTAAT 17881 28 100.0 32 ............................ TAGACTCAGCAGAAAACCCACTGCAAAACATG 17941 28 100.0 32 ............................ ATTCAAAATCACATAAGGAAAGGTAAGTGCGA 18001 28 100.0 32 ............................ GCTAACAGATGGCAGCGATGTTTTGAACTTCT 18061 28 100.0 32 ............................ GTCAGCATCAATAACTGCGCTTTCGTAATTAC 18121 28 100.0 32 ............................ ATAATTGATAGCAGACACGAGCCGTTCAGTAT 18181 28 100.0 32 ............................ CATAGCAGATACCGCAGACGCAGGCACTACAG 18241 28 100.0 32 ............................ TTGCCCGCCCATCACTGGCGCGTGCATATTGA 18301 28 100.0 32 ............................ TTTACTGATTAATACGCTAGAGAAATGCTTTA 18361 28 100.0 32 ............................ GAAGAAGATTTAATGAAATCTTGGGTTAACTG 18421 28 100.0 32 ............................ TTGCAGGACTTACCGTGGCGTTATTAGCCCAA 18481 28 100.0 32 ............................ GAATTGGTCAAGCGTGATGGGTAGCGGCGGCA 18541 28 100.0 32 ............................ GCCAACGTCTTTTACGGCATCTTGTACGCCCA 18601 28 100.0 32 ............................ CTTTTTTTGGTCATGTTGTGCGCCCACTTCGA 18661 28 100.0 32 ............................ AGTCACGATGAGCGTGTACGCCATGAACATAA 18721 28 100.0 32 ............................ AAGACAGGTTTAATGCCACTACTAACGCCACA 18781 28 100.0 32 ............................ AGTCCATTGCCTGATAGATCATTAAAGTAATA 18841 28 100.0 32 ............................ CGACAACGCCAAAGCGCACGATGTCGGGCGTT 18901 28 100.0 32 ............................ ATGGTAATGACGCAGATTTCGAGGAGTTGAAA 18961 28 100.0 32 ............................ GTGCAAAATTTACAGGTCATTAAAGAGCTTGC 19021 28 100.0 32 ............................ TTCTCGAACAATAGCCACATGGTCAGCAACCA 19081 28 100.0 32 ............................ TGTACCGCGGCAGACTCGGTTAAGTTAAACGC 19141 28 100.0 32 ............................ CTGTCTCATCTTTTAGCTTGCCTGCGCCGTCA 19201 28 100.0 32 ............................ AATAACCATGAAAACCTTGGCAAGTTTCCATG 19261 28 100.0 32 ............................ TATTAGGTAAAATCACCATATAGGTATAAATT 19321 28 100.0 32 ............................ CCCACGTATTAAAGCGGATAACGTCTTGCACT 19381 28 100.0 32 ............................ CCACAAGCATAATAGACGCAATCGGGCGGCTT 19441 28 100.0 32 ............................ AATCAAGGGAAGTTAAAGCAATGCCAGTTATT 19501 28 100.0 32 ............................ GTGATGGTAATGACGCAGATTTCGAGGAGTTG 19561 28 100.0 32 ............................ GCCTGACAAATCCATAAACTCAGTAAACTTCT 19621 28 100.0 32 ............................ AGCATGACGATGCTTTTCAAGACTTTTAACCC 19681 28 100.0 32 ............................ AATCTATAAAATCACAAACCTTTGAAGCCCAG 19741 28 100.0 32 ............................ CCGAACATCAGCACCAACGCCAGTTACTTTAT 19801 28 100.0 32 ............................ GCAAAATCTCACGAACAGCCCATTGACCCTTA 19861 28 100.0 32 ............................ AACAAGTGCTGATATGCTTGCTATTACTGGCT 19921 28 100.0 32 ............................ AAACAACTTGACTAGTTTGAAGTAAGCTAACA 19981 28 100.0 32 ............................ ATTGCGTTACAACTCGTCAAGACCGCGCACCC 20041 28 100.0 32 ............................ CAGTTGATATCTGGGCGTAATTCTTCTGCGGT 20101 28 100.0 32 ............................ GCCAACGTCTTTTACAGCTTCACCAACCCCGA 20161 28 100.0 32 ............................ AGAAGAAGAACCTATGAAACCAGTTAAAAATG 20221 28 100.0 32 ............................ AACAACTGCATCGCCAACTTTATCAACACTAT 20281 28 100.0 32 ............................ TAAAGCGCATTTGCAGAATCTTGTTCAAGACA 20341 28 100.0 32 ............................ TATACCAGGGCTGAAAATGCTTTTTCGTTTTA 20401 28 100.0 32 ............................ ACTCAAAACCGCCATCAGAATCTGGTGGAAAA 20461 28 100.0 32 ............................ ATCAACGGTGCCGAAAACTTTGCCACCACCAT 20521 28 100.0 32 ............................ ATCTAGCCAACTTTACCCCATGTCAATTAAAT 20581 28 100.0 32 ............................ AGTCTTGAATTTCTTGAGAACGCTCTAAACGG 20641 28 100.0 32 ............................ TTGTACCAACAGTGGCTAATGTGGATTAACTA 20701 28 100.0 32 ............................ ATCATACAACTAAGCGTCCTTGCTTCCTGTGG 20761 28 100.0 32 ............................ CAAATCCAAAAAGTTTGAAACCACTTGTTATT 20821 28 100.0 32 ............................ CCCCTGTTCCTGCTGTCCCTAACGATGGGGCG 20881 28 100.0 32 ............................ TTAAACGTGGCTTTAATAACGCCAATTTATCA 20941 28 100.0 32 ............................ GATGTCCCCGCTTTGTGATTTTTTATCTACGT 21001 28 100.0 32 ............................ TCATAAGCAGTAGGTAAGATTTTTCGAGTATT 21061 28 100.0 32 ............................ TGTTTTAGATTATCTCGCTAATGTGCAAGCTG 21121 28 100.0 32 ............................ AATAGCATCAATTATATCAGTAGGGTCAAACG 21181 28 100.0 32 ............................ AGCGATTGCACCGCCCACGATACCTTTTGCGA 21241 28 100.0 32 ............................ AGTCGCTCCGTTTTTGTTCGCTACAATGAGAA 21301 28 100.0 32 ............................ TTGATGAAAAGACGCTCGCTCTGGTCGAACGC 21361 28 100.0 32 ............................ CAAACCAGTTAACACAACAGTTAGAGCCGCAG 21421 28 100.0 32 ............................ TAGCATTTTTGCTAGTTCTTTTTGGTCGCCTG 21481 28 100.0 32 ............................ ACTAATCATGATTAATACAGTGCCATTTTGAC 21541 28 100.0 32 ............................ AAATGCGCTATCCCTGCCATATCACCGAGAAA 21601 28 100.0 32 ............................ CATTCAAAGATGGTAAGCCAAAAGTATTTTAT 21661 28 100.0 32 ............................ TGCGCCAGACGATTGGCACGACTTACCAAATA 21721 28 100.0 32 ............................ GCAAAGATTGACATTCGGATTTTCGCTAAGTT 21781 28 100.0 32 ............................ AACAGGCGCAGTATTTGAACGATTGAATTTCA 21841 28 100.0 32 ............................ TATCAATCGCTGAATTTTGCCAGTCTGTAGTG 21901 28 100.0 32 ............................ AAAATCGACGATAGCAAACACACGCTTGCGTC 21961 28 100.0 32 ............................ TAAAATGGGGCAAAAATACGCAAATACGATGG 22021 28 100.0 32 ............................ TTTAGCCGCCTTGTAGCGCGTTAAAATCGCAT 22081 28 100.0 32 ............................ TAAAATCATTGACATGGCTATATCAATGCCAG 22141 28 100.0 32 ............................ AAGTTGGCGCAACGGTACACACGGCAAACCAT 22201 28 100.0 32 ............................ AAGATCATCTTGTTTATCAAACCAATAAATAT 22261 28 100.0 32 ............................ ATCATGAAAATGCACCTATTTAAATCCAATGA 22321 28 100.0 33 ............................ GGCAGAGAAGACTATGAAGGGTTTGACCCATCC 22382 28 100.0 32 ............................ AATTAGATATCATCGCCAAGCATCAAATGGAA 22442 28 100.0 32 ............................ ACCATGCCCATGCGATGTTTGCAAAAACTATC 22502 28 100.0 33 ............................ AATAAAGTCCGTGGTTTTGACTTCTTTTAGCCC 22563 28 100.0 32 ............................ AATGCCAACAAAAACAGGACACCCATCATGAA 22623 28 100.0 32 ............................ AGCAACAGCGGCTAAAAGAGCAGGCATTTATA 22683 28 100.0 32 ............................ TTTTCCATGACCGTTAGCGGCAGTAACTAAAA 22743 28 100.0 32 ............................ AGCAGTAACAAGGGTAAAACCGATACTTGCAA 22803 28 100.0 32 ............................ TTCTGGTGGTGGGTGTTCTGGGTCGTCTTGTT 22863 28 100.0 32 ............................ TGAATATGAAAAGTTGTTTCAACAATATGCGA 22923 28 100.0 32 ............................ GACAACCTTGCCGCCAACGTCTTTTACCGCAT 22983 28 100.0 32 ............................ GCCAACGTCTTTTACAGCATCACCGACCCCGA 23043 28 100.0 32 ............................ TGTCGACATTCAAACGCCAGAACTACCGCAAA 23103 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 145 28 100.0 32 GTTCGCCATCGCATAGATGGTTTAGAAA # Left flank : TCGCTGGGCAAAGGTATTATATAAAAGCTTGGCGGAAGGCTGTGGCTTTAAATTTACCCGCGAGGAAGGCAAAAATGCCAATGATGATATCGCCGATATCGCCAATAGCTACCTTGACCACGGGAATTATATCGCTTATGGCTATGCGGCAGTTGCATTACATGGGTTAGGTATTAGCTTTGCTCTACCGATGCTACATGGTAAAACCCGCCGTGGTGGTTTGGTGTTTGATGTAGCAGATTTGGTCAAAGATGCGATGGTGATGCCACAAGCATTTATTTCGGCAAAACTGGGGCATAATCAAAAAGAGTTTCGGATGCAACTTATCGAGATTTGCCAAGACCAAGATGTGTTGGATTATATGTTTGGCTTCGTTGTAGACACTTGCCAAAAAATTAAATAAAATCAGATGCTTATAAAAAGCACTTTAAAACGAAGTGTCTTAACTGAATTAAAACGTATATAATTGATATCTGGGGATTTTGTCAGAAAATTCTCCA # Right flank : ACATGAGCTTGATTGATATTGTTCATGCACCCTACTAAATTTTTCTAGTATATATCTACTTTGCATTTTTTTCGTCAATATTTCTCATTTTTATACGAGATAGTCCTAATCTAAAGTTAAGGTAAGCAATTTAATATATTGAATTTTTGCTTATGTATTATTTTATTAGTATGTGGATTTAGAGTCGTACCGTGAAAACTCAAAACTTTATATAGTCCGTATAACAACTTTTGTATCTATTTTTCCAATCTCAAGACGGTTAACTAAACTAGTGTGTCAATGTCTTAAAGTTTCTAATAGCCATGTTTTTAATTTGGAGGGAATAACTTTGAAAGGATTTTTTTTAGGGCATGAAGGTTTTTTAAAATGAGTGATTAAAGTTGAAAGAAATAAATCCAGTTTCATCTCTTTTAAATTCGGGTGGGGGTCAAAATCTACTTGCCCAAAAATTAACCAAGGCACAATTTGGGCACAAAATGGGCACACAAGATTTCTAAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCATCGCATAGATGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGCCATCGCATAGATGGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //