Array 1 171280-173383 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMS01000007.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712452, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171280 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 171341 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171402 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171463 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171524 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171585 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171646 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171707 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171768 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171829 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171890 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171951 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 172012 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 172073 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172134 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172195 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172256 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172317 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172378 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172439 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 172500 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 172561 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 172623 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 172684 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 172745 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 172806 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172867 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172929 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172990 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 173051 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 173112 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 173173 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 173234 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 173295 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 173356 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189891-191749 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMS01000007.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712452, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189891 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189952 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 190013 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 190074 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 190135 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 190196 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 190257 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 190318 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 190379 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 190440 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 190501 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 190562 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 190623 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 190684 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 190745 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190806 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190867 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190928 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190989 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 191050 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 191111 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 191172 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 191233 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 191294 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 191355 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 191416 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 191477 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 191538 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 191599 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191660 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191721 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 31 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GGGCAGATTTACGACAACAACCCGGCAGCGGTGGTGTTCCCCGCGCCAGCGGGGATAAACCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCCCCGCGCCAGCGGGGATAAACCGAGATAGCGTGAGGCAATTCTTAGCGTTGAACTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAGGTTGCACCTGAGCGCCCCTTCACTGGACGTGTTCCCCGCGCCAGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 192108-192625 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMS01000007.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712452, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 192108 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 192169 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 192230 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 192291 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 192352 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 192413 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 192474 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 192535 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 192596 29 93.1 0 A...........T................ | A [192622] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGCCAGCGGGGATAAACCGTGGATAAAACGGTGTTCATATTTATTGGTGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGCCTTTGCCCCCAGGAAACGATGATGACCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCAGATTTACGACAACAACCCGGCAGCGGTGGTGTTCCCCGCGCCAGCGGGGATAAACCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //