Array 1 419758-417919 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOLV010000002.1 Enterococcus faecalis strain 20B1-9 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================================================== ================== 419757 37 100.0 31 ..................................... CTGCTCATTCGTTTTCTCCTCCTAACACGCT 419689 37 97.3 29 ....................................C AGCGCCGGAAAAGTAGCAAGCCCCACAGT 419623 37 100.0 29 ..................................... CGTGCCTTCAAATCCAAAAAAGGTTTGTT 419557 37 97.3 29 ....................................T GGCTTGTAATGCCTGAGTTACAGTCTTCT 419491 37 100.0 29 ..................................... AACACTTCTTCTGCTAAAACAACATTTTC 419425 37 100.0 29 ..................................... TCGTTAATTGATGATGTAGCCAACGCCAT 419359 37 100.0 29 ..................................... CCACTTGAACGGAATACTGGAACGTTTTC 419293 37 100.0 29 ..................................... GGGATTGTTGGGATTAGTGAAACATCTGT 419227 37 100.0 29 ..................................... GTGACAGATGGTAAATCGTTGTTACTTGT 419161 37 100.0 29 ..................................... CCAGAAATAAAAGTTGACGTAAGTATTGA 419095 37 97.3 29 ....................................T AAGGGCAAAACTGAAAACGATACAACGAT 419029 37 97.3 29 ....................................G CTAAAGGATTTTTGATGATGTTTTCTCGT 418963 37 97.3 29 ....................................G GTGTCTATGTTTCGGAAGCCCCTTTCTTG 418897 37 97.3 29 ....................................T GATGAAAACCGATGGTATTTACTTTCACA 418831 37 97.3 29 ....................................C ACTTGTCCAATATGAATGTGTTGTTCTAT 418765 37 97.3 29 ....................................T TAGTTATTGAACCTCAACGCACACCATTG 418699 37 100.0 29 ..................................... TTAAGTTCGACTGGAAGGCTCTTATAGGT 418633 37 97.3 29 ....................................T AATCATGAGTGGGGATCGCTGCTTTATGA 418567 37 97.3 29 ....................................T AATATAGGCGCCTAATCGTTTATAATGAG 418501 37 97.3 29 ....................................T GTTTTAAATTCATACATAACGAAACATGT 418435 37 97.3 29 ....................................T TAGAAAAGACGTGACAGAGCAAACAGCGC 418369 37 100.0 29 ..................................... GGTACAATTTATGGATTGTCACATGTCAT 418303 37 97.3 29 ....................................T GATGAAAACCGATGGTATTTACTTTCACA 418237 37 97.3 29 ....................................T TATGCAGAAAAATTAGAGCAGCTGAAAAA 418171 37 94.6 29 ..................................T.T CTAATGAGCATTCATTACATATGTAGAAC 418105 35 81.1 114 ......................TT.--.CG......G ATATGATTGATGTAAAAATATCATTGATATGTATAAATATGGTTATTATATAAAAAATATAAGTAACGAATTAAAGCTTTGCTAGAGCAAGTGATGCGATTACGAAATTATTTA T [418073] 417955 37 70.3 0 A...........C...A....TT.CTT...G..T.G. | ========== ====== ====== ====== ===================================== ================================================================================================================== ================== 27 37 96.6 32 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Left flank : CACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTGACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGGGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTATTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAGAAAAAATAATTCTCCGAG # Right flank : GAGTACGATTAGTTAAATATTTAGTTTTACAGCTATGTTGTTATTATATGTGTTGAACGAAGTTATTGATTTTAAAAGTAGTTGTTCCTCCTTTTTTTATATGCTACAATTTTTCTATATTAATCATTAGTTAAATATTTAAGGAGGTGATTATAATAAGAAGGAAAGGATTTAACAAAATAAAAAAAGAAATGGAATATGTTAAAGTAGTTACGAATTTACTAATGGTATCAAAATTTTTTACGCTACAGTCCGATGAAGATTTACATACATTAACTCTGTTTGGAACATTACTTATTTAATATTTATAGACGCTTTGTAATGAATGCGCTTTCTACGAAACTGGATAATAAAAATTGGCATTTTTCAAATGCTACTTTATGTAGTTTACTTTTTTATAGTGGCTATGTATGTTCGCATTTATTTCTTTTGAATAAAAATCACTTATCTATAAATCAAGAATTAATCCCCAATTTATTGAAAATGACACTCCCTGTTTT # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.25, 8:1, 9:0.52, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 928094-927463 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOLV010000001.1 Enterococcus faecalis strain 20B1-9 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 928093 37 97.3 29 ....................................G GGATTTACAATAACTTCGCTACCATCTTC 928027 37 100.0 29 ..................................... TATGTGATTGAGGGAATTTTGATTGATGC 927961 37 97.3 29 ....................................A TAAGGCTAAAGAATCTATCAAGAAAGTAA 927895 37 97.3 29 ....................................C TTAAAGCGTTCCGAATAGCGTTCTAAGAA 927829 37 100.0 29 ..................................... AAGCATTTTTTTGATGTGTAATACTTATC 927763 37 100.0 29 ..................................... TCCAAAATTTAGAACAAGAAAAAAAGACC 927697 37 97.3 29 ....................................G CATTTTTGTAGTTCTTACTATTCTTGCTT 927631 37 100.0 29 ..................................... CGACCGTCCCATGTTGGAGCTCCAATCAA 927565 37 97.3 29 ....................................C TTATTTAAAAGACGGCAATATTAAAAACA 927499 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================= ================== 10 37 98.4 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : TGTATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTTGCAAGAAAATATCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTACAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : AACTTTTTTGATTTGGCTTTTTCTCCCCTGTTTTATAGCCATGTTGTTAAAAAACAAACTATCACCTCAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGTTTCAATTTTCGAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGTAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAAT # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //