Array 1 2035767-2040445 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061799.1 Desulfonema limicola strain 5ac10 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2035767 37 100.0 38 ..................................... AGAAAGGGAGATAGTAAATTTACTAGAGCTCCCGGGTT 2035842 37 100.0 40 ..................................... AGGTCTTTCTACTGATGGTATAATCCCGCCGCCTTTTGTC 2035919 37 100.0 37 ..................................... GAGTTATTGTGCCAGCCTCCGTAAACCACATCCTGGA 2035993 37 100.0 41 ..................................... AAGAAAAGGTTTTTGACTTGCTCCGCTGATGGAGGCTGCAT 2036071 37 100.0 37 ..................................... CGGAACATAGAAAATTAAATATAATTTTCTATGATAG 2036145 37 100.0 38 ..................................... CAGAATAAACATTAGGAATCGCCGCTATTACGATAAAA 2036220 37 100.0 39 ..................................... AACACTCCAGCCTTCACGACTTGGGATTTTAAATCCCGA 2036296 37 100.0 37 ..................................... AGCTTTTCGGGACAATTTCATAAGGGCGTTCGATGAC 2036370 37 100.0 39 ..................................... ATGGTACTTTCTTAAATCAGCGGCATAAAATCTGCCGTA 2036446 37 100.0 38 ..................................... TCAATCTTAAAGATAATGATTCATTTTTTGTTTCAGTA 2036521 37 100.0 38 ..................................... ATTGTTTTTCATAGTTGTTGCGACTTCAGTCGCAACAA 2036596 37 100.0 38 ..................................... AATTAATACTGCAAATTGATCGTCTAAAACTTCGACGA 2036671 37 100.0 37 ..................................... ACGCAATCCCGGTTGTTGGCTCGGAGCTTTGCAGCTC 2036745 37 100.0 37 ..................................... AAAAATAACAACTACAAACGGCATCCCTGTGTGCTGT 2036819 37 100.0 38 ..................................... TGGGTTGACGATGAGACTGTCCTCCTCATCTGTGAACA 2036894 37 100.0 37 ..................................... ACTTCAGCGGTTTTAATGTCAAGGTCGCCAGGGCTTA 2036968 37 100.0 37 ..................................... ACCGTTTCTTCGTAATAGTCCAGAATATCCTGCATCC 2037042 37 100.0 36 ..................................... ATTATGTCAACAGTTGGATGCAATGCCAGAAATGTT 2037115 37 100.0 38 ..................................... GAGTTCCCTCTGGTTTTTGTCCTCCATGCTTAGCGTTA 2037190 37 100.0 39 ..................................... AATCTTCCCCATGTTCATCTATAAGGGTATAAATAACCC 2037266 37 100.0 37 ..................................... TTTTTCACGTCAAATCTTTCCATAGTTCCCTCCAATT 2037340 37 100.0 38 ..................................... ACCTGCAATACAGCTCCTATCTGCCGAAGGCTGGTTGT 2037415 37 100.0 37 ..................................... TCGTTCAAGATTATTTCTGACACCATTTCATATTGCG 2037489 37 100.0 38 ..................................... AGCCTGTGCAGTATTTCGGCTCCTTTGTATTCACCTTC 2037564 37 100.0 38 ..................................... ATCCTAAAATGAGACTGGTCGTAATCAGGGTTAATTTC 2037639 37 100.0 39 ..................................... AATCACATGATATTTGTTCTTTGTTGCCTGCATAATTTC 2037715 37 100.0 38 ..................................... ATTTGTTTGCCGCATGATGCGACAAATACGGCTATAAA 2037790 37 100.0 37 ..................................... TTGCACGTGGAACACATACTATGTTCTGCACATCTGC 2037864 37 100.0 39 ..................................... GTTTTGGTTTCTGTGTAGTTCCTTCAATGCCCATGAATT 2037940 37 100.0 36 ..................................... ATGCAATTGCAATGTTTACAGTACGATATTGTTTTA 2038013 37 100.0 37 ..................................... CCTTCTCTTTCATTTCATCAGCTTTCCTTGCCATAGT 2038087 37 100.0 39 ..................................... ACCCTGTCAGGGATTTGGGTTTCGTCAGTTCCCTCTGTG 2038163 37 100.0 37 ..................................... GATTTATATGATAAAATAACATACTCACCTATAACGG 2038237 37 100.0 39 ..................................... AGACTCATATGTTTGACCATAAAAGAAACAATAACCAGC 2038313 37 100.0 37 ..................................... AAGTTCCTGCATTGCGTCAAATCTTGCGTCTTGTTCT 2038387 37 100.0 39 ..................................... GACCTTTAGATGCTTTTACCTTTCCACAACCTTCAGGGT 2038463 37 100.0 39 ..................................... ATCATATTCAAAACCAATTCTTGTTGCAATTATCATTAA 2038539 37 100.0 41 ..................................... ATAGTTAAAGGCTTGAGTAGGAATATCTTTACTCAAGCCTT 2038617 37 100.0 38 ..................................... CTTCTCACTGCAGTGTCTTGAGACAAAATCCGCTCCAT 2038692 37 100.0 38 ..................................... GCTTTTACGGTTTCGTTTTTTTCGTGGATATATTTCGT 2038767 37 100.0 36 ..................................... AACTTAACAATATGCTCGTGAGGAGCTGTTGTTGAA 2038840 37 100.0 39 ..................................... ATCCCCACAAATTCCAATGACAATCTCCGTCCGTACTTC 2038916 37 100.0 37 ..................................... AACATTTCAGATCCGTAATTTAGATCAAAAACTATTC 2038990 37 100.0 39 ..................................... AACTTCTCCCTTGTCCCAATCAAAATCAACGGAAGTGTA 2039066 37 100.0 37 ..................................... ATTAATTCTTTTTTTCATTTTTGTTCTTTTGTTTTTT 2039140 37 100.0 37 ..................................... ACTTACCGAACTCCTCTCCATTATCAATGTCCATGGC 2039214 37 100.0 37 ..................................... TCCTAACTTTGTCAACATCTGTTTGAACATAGTTCTC 2039288 37 100.0 36 ..................................... ATTCTGACAGTATGCTGCTCTTTTTTTAGTGTTGAC 2039361 37 100.0 36 ..................................... ACCTCTGCAACAGCTGCATCGTACAAAGCATCATCC 2039434 37 100.0 38 ..................................... AGGATTGTAAGTATTACCTGGTTTTGCTGATCCGATTT 2039509 37 100.0 39 ..................................... AATATTTTTCCCGTTTAAATCCTTAAACCACCAGCCCTT 2039585 37 100.0 38 ..................................... AGCATTTCACGACTCCTAACCCGAAGGTCTCAATTATT 2039660 37 100.0 37 ..................................... GAAAAATCATAGCTTTTGTCTTCACTTGATATGGATA 2039734 37 100.0 38 ..................................... AATTATATTTCCATCGGCATCTACCTTGATGAAAAAAA 2039809 37 100.0 37 ..................................... ACAATAAAGTAATTTTTTCCTCCTATGGTAACGTCTT 2039883 37 100.0 38 ..................................... CATCCCACTTTCTTCCATTCTCTTTAGTCTCTGATATT 2039958 37 100.0 39 ..................................... ACCTGCATCTGACTGAATGAAAGAGGCGAAGATACCCTT 2040034 37 100.0 37 ..................................... GCCATAATTAAATCTCCTTTTCTCTGAAGTTATGCAG 2040108 37 100.0 38 ..................................... TTTACAGCAAACAGCAGTTGCCTGTCTGAAGGTTTCCA 2040183 37 100.0 39 ..................................... ACTGTTTTTTTAATTATTTTTAAAATAATTATAATTATC 2040259 37 100.0 40 ..................................... ACCCGGATGTATGAGTTATCTGCAGTGCTTCCTATTTATC 2040336 37 100.0 36 ..................................... TTGCCAGCCTGGAGTGATTTCTTCCTGATCATTTTC 2040409 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 63 37 100.0 38 GTGAAAATCATTGACCCGACTTTGAGGGGATTGAGAC # Left flank : GCTGTTGAATAATATTGAATATCAGCCTTATATTTTTTATTCATAATGACAAAATTAGTTTTATTGACTTCTACGCTAATCTTAATAAAAAGGATTATAAAGGATGCAGAGAAGATCAATTCCAAGGTTTTGGTTTTATGCTCAAATTATTTAAGTAGTTTGAATATAAGATTAAAACTTTTTTTAATTTAATATCAGTAGGATAGCTTTAAATATTACAAAATTGTAACATGAAAATTTTATCTAAAACTCTAATTTTATTAAAAATATTCATATTTTGCTGAAAATTTTCCGAGGATCTTAAAAAGGTCAAAAAAGGGGGGGGATCCTCGGAAAGTTTTGATCCGTCTAAGATACTGATATTTAAGTATTATAAAACGTTAGTATGCAAACCTTTGTTAAGATGACACAAAATGAAACATAAAAAAGGTGTGCCAAAATGGAGATCCTCGATTTATGGTATTTAAACTCTTGATTTTTAATTCGATAAAATGGTAAGG # Right flank : CATGTGTTAAATAGCTTCTTGTTTTAAGAGCCTACGCATAAACTAAAAAAATGGCGAGAATTGCAAAAAAAAAATTTAGGCTGAATCCAATATTTCGCATCATTTTTAATATTCAGCAGAATTTGGGGACGTTTAGGATAAATATTTCAAACAACATATAAAATATCAGTATTTTAGAAACAGTTATCCTGTTAAGTCCTATTTTTCTTTTAAAAATAACTTGGAACTATCTTTGATTGCGTAAAAGAATATGAAAAGCAATCATAGTTTTATCAAGGTGAGCCTGGAAAGAGTCATTTCCCCGCTTCGTCAATCTGTCATCACTCAAATCGCACTTAAGCTGTTTTATCATTCTTTCAACAGAAGGCCTCCTGGTCATAAGAGCTTTGAATCGTTTTGACATAGGCGGATCATCAATATCAATGTGGGGCATCATATCAAACGGTATGGTAACATATCGTCCTTTGTCTGAGACAGGAGAACAAGACTGTTTATTGTCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAAAATCATTGACCCGACTTTGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 2042584-2043891 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061799.1 Desulfonema limicola strain 5ac10 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2042584 37 100.0 38 ..................................... ATCGCATATGGGACAGAAGTATATCTTATATTCACCGC 2042659 37 100.0 37 ..................................... ACCTTCTCCAGTCCTTGCGGAATGAATGTAAGCGTTA 2042733 37 100.0 38 ..................................... ACTATTATGTTATTTTTCTTATTTTCTTTTTTTGCGCT 2042808 37 100.0 38 ..................................... GATTTATAATTTTTTCCTAAAAATCTGATTTCATTATC 2042883 37 100.0 38 ..................................... AATCTCTTTTTTCAATCATTTTTATCATTTCTTTTTCT 2042958 37 100.0 37 ..................................... AAAGAAATTGTTGAGGTTAATCACCGAATATAATATC 2043032 37 100.0 38 ..................................... GCTTTATCTGTCCCCGTCTTTACTGCATTCCCGAAGCC 2043107 37 97.3 36 ..............T...................... ATTCTTATGAAAGACGGCAAACAAGCCGTCTTTCTG 2043180 37 100.0 37 ..................................... AGCATATTACAGGATGGGCAGTATTCAGCATAAAGTC 2043254 37 100.0 40 ..................................... ATTTCGCTTTTTCCGTAGCCCCCTGGCCCCCAGAGTACTA 2043331 37 100.0 37 ..................................... AACACGCCCCTTTTTACTACCTGCGCTTTTAAGTCGC 2043405 37 100.0 39 ..................................... AACTACCTGCGCCTTCAGGTCTCGCAGAAAATAACTCGT 2043481 37 100.0 37 ..................................... TTTAATAAGATGATACCGAGTTCCATCAATAAATTCA 2043555 37 100.0 38 ..................................... ACCGGAGGCTTTTGGACCAACGCCCAAATTGTAATGCG 2043630 37 100.0 38 ..................................... GTACACGAATTGACCAGTCTCCGTTCATGAGACCAGAC 2043705 37 100.0 38 ..................................... AGCATTTCTGCCACAATAGCAGCCCATGAACCAATCCT 2043780 37 100.0 38 ..................................... ATGATGAAAGATAAAGATTTCTGCATGATTTTAACTCC 2043855 37 89.2 0 ...................T............TT..T | ========== ====== ====== ====== ===================================== ======================================== ================== 18 37 99.2 38 GTGAAAATCATTGACCCGACTTTGAGGGGATTGAGAC # Left flank : AAAATGATATAAAGCATTATAATACATGACACCAATGGCCAGATAATCCTGCCAGGGCATATTTTTCAGCAGAGGATACCATGGGGTAAACGGTGAGTTAAGAAGCAGTTCGTCGTCTTTATTTACCACAACAACTAAAGGTATCTGTACAATAGGTGGCGATGAGATATTTAACATAATATTAGTTCCTTTTAGTAAGATATATACCATTATATATTTAGTAGTTTTGTAAACTTGTCTTCAATGAGAATTTCTCATTGAAGATTTCAAATATATCTCCATATCATATTTTTTAATGAGAAGCAACAATTATTATGCTATTTTTTTATTATTTAAATTAGTTATATCGTTATTTCAAAATGAAGTGCAAAAATATAATCGCATAAAATATTTATATTTGATTTATAAATTTACAAAACAATATAATTCGTATTGGTGGCACGTATTTGATATTATAGTGTATTTTACGTTTATGCGTAGGCTCTTAAGAGTTTCCATTG # Right flank : TCAAAAAAAGCCCTGCCTGATGTAAGCATCAGGCAGGGCTTTTTTTATTTGTGAAAAGCCCCCAGAGGCAACCGGAAAATTCCAACGGAGAAAATGAAAAAGAGTCACCAAATAAAAATTTGGTAAAATGGAAAATGCGCAGCAAAAACGCCCTATATGGGTTACCAATAAAAAAAGGGCAAAAAAAAATTGGTAGCAAAAAATATTTTTAAAAAATTAACACCCTAATTCTGAAAAAAACTTATTTTTCCAAGCACTCCCAATCTAAATATATTCTGGAACAACCTGATCAATAAAAAGGATTCTGTTATTGAAGTTCCTGGACACAGGTGGGTCATTCCTGCACATGCTGTGTATAATCATGTTTCAATGGGATAAGGCATATTCAAATATGGTTTTATTTCAGGTATATTATTTATTAAGACTTCCCTAACCTTGAAATATCTTTATATAATGAATATTTTTGCTTTATGGTTTTTTTAATATACTCAAAAGGAGAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAAAATCATTGACCCGACTTTGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 3 2769627-2773394 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061799.1 Desulfonema limicola strain 5ac10 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2769627 37 100.0 37 ..................................... AATTAAATTAGGAGCGGGAAACGGGATTTGAACCCGC 2769701 37 100.0 38 ..................................... TTAATTCACATGGACATATTTGTCCATTGAATGTTTTT 2769776 37 100.0 38 ..................................... TCCACTCCCGCTTCTCCCCCCTTCAGGAGAAAAACTTC 2769851 37 100.0 37 ..................................... ACAATATGGGTCTATAAGAAGTTGCCCTTGAAGACAA 2769925 37 100.0 36 ..................................... ATGTACATCTAAGAACAATATTATTACATTCATATG 2769998 37 100.0 37 ..................................... GTATGGCTGAGCTTGTGCATTTATGCCTTTGTCGATC 2770072 37 100.0 37 ..................................... GAGCAAGGGCTTTAGCAGCTTTCCAAACTATTTTCAT 2770146 37 100.0 38 ..................................... CTGAAGTTGGAATATTGATACTACTATGATTAAAAAAT 2770221 37 100.0 38 ..................................... ACCCTATCAAAGAACACTCCGGGCTATAGCCCTTGACT 2770296 37 100.0 40 ..................................... ATATGCGTCCAGCATCCCGGATGTTTTCGGGATAATAACA 2770373 37 100.0 38 ..................................... TTTTTCTCATTATAATTTCTCCTTTAAAAAAGATTATT 2770448 37 100.0 37 ..................................... GATTTTAAACCTTTCACAAGCATTTTCCTGGTATCTG 2770522 37 100.0 37 ..................................... ACCAAAATAGAATTTTGATTCTCAGGATTCCAATCGG 2770596 37 100.0 38 ..................................... ATTCGGGGTAATATGCGGGATGTCGTTAAACATCATTA 2770671 37 100.0 35 ..................................... AACCAAACTGACGGAGTTTTCCGTTATACAAACGG 2770743 37 100.0 37 ..................................... ACTTCTCTTCAATCTGACACCCCTTATACAAAGGATT 2770817 37 100.0 40 ..................................... ACCTTGGCGGACCATATCATTAGCATTTCTGCCAACGATA 2770894 37 100.0 37 ..................................... ACACCGTGTATAGCATCAGCCACAAGCTCACTATTCC 2770968 37 100.0 39 ..................................... ACTTGGGTTATCTGAGAGTTAGATCCGGAGGTGGCAGTT 2771044 37 100.0 37 ..................................... ACACAAGGTACTCCCAGAATACAGCTTTCCTCTTGAA 2771118 37 100.0 38 ..................................... ACTGATCGTTGGTTTTGATACGGGCATCCACACCGACA 2771193 37 100.0 36 ..................................... GAATGGGAGGATTTGCTGTGCTTCTATGAGATCAAT 2771266 37 100.0 38 ..................................... ATTAATGTTAATTGTTGTCATGTCGCTTTCTCCTTATT 2771341 37 100.0 39 ..................................... AACTCTTTTCCCGCCTATTTCTATGTAGGCAGATGTCAG 2771417 37 100.0 37 ..................................... ACTCTCTCATAATTTCTGATTTAGTCATTTGTTTTCC 2771491 37 100.0 40 ..................................... AATACTTTTTCGGTCCCAAATTCATGGTCAAAACTATCGT 2771568 37 100.0 38 ..................................... AATCTTTTTAACTTGCGACATTTTGCGTTTCTGGTTCT 2771643 37 100.0 37 ..................................... AACGCCATACATGCGCCGCATGTTATTAAGAATTTCT 2771717 37 100.0 35 ..................................... TCAGCGACTGGTTAGGGTGTTATTTGCAATCTTTA 2771789 37 100.0 36 ..................................... AAGATTGGATGGTTTTTTCAAACAAGTCTTTATGTT 2771862 37 100.0 38 ..................................... ACAGTTGTATCAAAACCGTGGCTGGACATTAATGTATC 2771937 37 100.0 38 ..................................... AGTTTTATTGTCAAAATGGCAACCTGCACCAAAATCAT 2772012 37 100.0 37 ..................................... AAGACATATTTTTTAAAATCCGCTTTTGCGGTTTCAA 2772086 37 100.0 37 ..................................... ATGCTTGCAGTGTGATACCGTTTTACTCATAGTCTTT 2772160 37 100.0 36 ..................................... TAAATAATATGCCAATGCCCTGGTGTTTTAGACTCT 2772233 37 100.0 37 ..................................... ATAATCGGCTCAGGTCCAAAATCAACAGGGGGCGCGA 2772307 37 91.9 38 TGT.................................. AACCGATTGTCATAAAAAATCCGGCCACAACGGCCAAC 2772382 37 100.0 37 ..................................... CATCAATTGGCCCGCACCATCCCTTTGCTTCAAAGTC 2772456 37 100.0 39 ..................................... GATCAGTCAATAATTCTAAGTCTTCCAGGATATCTTCCT 2772532 37 100.0 38 ..................................... AACTCAAAGTTTTGCCCCCTGTAAGACAGGGACAGAAC 2772607 37 100.0 39 ..................................... CAGTTTTATTGTTTTTTTGCTACTTCCGTCAGAAATTTC 2772683 37 100.0 37 ..................................... TTATAATATCCACACCTTTCGGTGTCTAATATCAGTT 2772757 37 100.0 37 ..................................... ATCTGCTCTGGAATTTCTTCCGGAGATACCTTTACTA 2772831 37 100.0 35 ..................................... AATTATTCAGAAGGAGTTTCCAACTCCTTCCTTTC 2772903 37 100.0 37 ..................................... ACATAGCCCTTTTTTGTTAATGCTATCATGGTAATCT 2772977 37 100.0 39 ..................................... GAGGAGTTGACACCAGTCGTTTTCGCCTGGCGTATTGTC 2773053 37 100.0 39 ..................................... AACTCTTTTTCAGTTTCGATTTGTTCGGACAATATATCT 2773129 37 100.0 38 ..................................... ATGCTGCCTTCGCATTGCCACGTGGGGTTGTTTCACTT 2773204 37 100.0 40 ..................................... ATATATCCCCGTCCTCTACCGAAATAGATGAAGGGGACCC 2773281 37 97.3 40 ..G.................................. TCGAATTACTTCGCATCCCTGGTACGTCCCCTCTTTTCTC 2773358 37 97.3 0 ..G.................................. | ========== ====== ====== ====== ===================================== ======================================== ================== 51 37 99.7 38 GTAAAAATCATTGACCCGACTTTGAGGGGATTGAGAC # Left flank : ACTGCTCAATAATACTGAATATCAGCCTTATATTTTTTATTCATAATGACAAAATTAGTTTTATTGACTTCTACGCTAATCTTAATAAAAAGGATTATAAAGGATGCAGAGAAGATCAATTCCAAGGTTTTGGTTTTATGCTCAAATTATTTAAGTAGTTTGAATATAAGATTAAAACTTTTTTTAATTTAATATCAGTAGGATAGCTTTAAATATTACAAAATTGTAACATGAAAATTTTATCTAAAACTCTAATTTTATTAAAAATATTCATATTTTGCTGAAAATTTTCCGAGGATCTTAAAAAGGTCAAAAAAGGGGGGGGATCCTCGGAAAGTTTTGATCCGTCTAAGATACTGATATTTAAGTATTATAAAACGTTAGTATGCGAACCTTTGTTAAGATGACACAAAATGAAACATAAAAAAGGTGTGCCAAAATGGAGATCCTCGATTTATGGTATTTAAACTCTTGATTTTTAATTCGATAAAATGGTAAGT # Right flank : CGCTTTATGCTTTAATTTTTTGGTTTAGCCACATTTTCGTGAAAATCATTGACCCGACTTGAATGTTCTCGGTTTTAAAAACCGAGAAGGTGCGGTCTTGGTTGGTGCGGCTGATCAATGTAGATATTAGATATATATCTTAATTTGGCAGGATTTTATTCTGAAAAGCGGCAAAAATTATAATTGGCTGGTAAAAAAGACTGGAAAATTAAATAATAATAATTAAAATAAGATATAAAGGACATACCCCGCCTGTCCGATTCATTTCATTTTTTTGGAAAAAATCGGTTTTGGCTCTTTGAAAATCTAATAATGTAATTTAGCCAGATATCAAGGCGGTTTATTTAAAGGGCCGTCCCTGATATTCGTCAGTATTTTATCAAATTCAATACCTGAAGAATGCGCATCCACAGAGTTATCAGGCAGTTTTTCCGATATTTCTATTTTTAAAAATTCCTTATACATAATTTCAGCATGAATGGCGATATATACCAGAAAGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAAAATCATTGACCCGACTTTGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 3271070-3257409 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061799.1 Desulfonema limicola strain 5ac10 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================================================================================================================================== ================== 3271069 37 100.0 35 ..................................... CAGCCCCTGTCTCATTCTGGATTCCGATAATAGTA 3270997 37 100.0 36 ..................................... TAAAAGTGCGGATTCTGTAAGTGTTCTGTCTGTTTC 3270924 37 100.0 35 ..................................... CTTTTTTAGACGGGTCTTGCAGCCTGACAAGCATT 3270852 37 100.0 36 ..................................... TTTTTAAATGTCATCAATATTTATGTCTGGTGTTGC 3270779 37 100.0 36 ..................................... GAAATTTTCAGTTCCTACCATTCCACTATGAACCAT 3270706 37 100.0 35 ..................................... TTTCAGCGTCTTGTGTTTCAACAGCAACAGTTTTA 3270634 37 100.0 36 ..................................... AGGTTAAGTACGGCCCCAAGATCGCCAGCACATATT 3270561 37 100.0 37 ..................................... TGGAACTTCATCAATTGTAACAATTATCTTGATTTTT 3270487 37 100.0 39 ..................................... ACTGGTTACAGCCTGGGATATGGGCAAGAAGGGAGCATA 3270411 37 100.0 36 ..................................... TAACTGTAAAACCGAAAGCTGATAATGTTCTGGTTG 3270338 37 100.0 36 ..................................... ATTTCTTCCAAAGTCAACAAATCTCAATCACCTCCT 3270265 37 100.0 34 ..................................... CCGTGCCTGTAAATTCAACATTACTTTTAATTGG 3270194 37 100.0 35 ..................................... ACCTTATTCAGGTCTTTTTTTATCCCGGATAATGC 3270122 37 100.0 36 ..................................... TTCGCCATCGTCCCATGTTACAATATTTGTATATAT 3270049 37 100.0 37 ..................................... CTGCCAGTGCCCTGAGTTCCCCCAGGGTTCTTTTGCC 3269975 37 100.0 36 ..................................... CACGAAACGATAGGCGCTCATTATGCTTCGGGAATG 3269902 37 100.0 36 ..................................... GAAACCTGGGCAGCCCAGAAACAAAGCTGATTTACA 3269829 37 100.0 36 ..................................... ACATGACGGTAAAAAATCTATCTGATGGAACAGATG 3269756 37 100.0 37 ..................................... ATAGATCAATATCTGATATTTTCTTACCTAAAGACCC 3269682 37 100.0 37 ..................................... CATTTTTGGCCTGGCTTACATCAATATTAAGTTCAGG 3269608 37 100.0 37 ..................................... TGTTATCAGGGGCGGTATAATCAGTTGACGTGAATAC 3269534 37 100.0 36 ..................................... CAGGAGAGCGCTTTCTGTAAGGGTTCTGTCTGTTTC 3269461 37 100.0 35 ..................................... TGGTTGCCTGGCCTACCCAGGCAGAAAATCTCTAC 3269389 37 100.0 37 ..................................... TTTCAGGGCTGCCCAGGTTTCCAAATGCAGGCACACC 3269315 37 100.0 35 ..................................... TATGTCCCTCTCATTGTAATAGCAGCCGGTTCGTC 3269243 37 100.0 37 ..................................... GAAAGGCTTTGACGGCCTCAATAGCTGCCCTAATTTC 3269169 37 100.0 36 ..................................... ATTCGTCAACCACGATAAACTGTTCTGATAAAGGCT 3269096 37 100.0 36 ..................................... ATATAATTTTTTTCATGCTGCTCCCATCGAAACGAT 3269023 37 100.0 36 ..................................... TAACTCCATGTATTTCTATCATTTTTTACCCCGCTA 3268950 37 100.0 36 ..................................... AAACGTCCAGGCGGTTCCTTATCCTATGTCATAAGC 3268877 37 100.0 38 ..................................... CATGACCTGCCTCGATCAGCTTGTCCTTCCAATAATGG 3268802 37 100.0 36 ..................................... AATCCGTGTTATAGACACCCTTTACAAGTTCAAATC 3268729 37 100.0 37 ..................................... ACCGGATAGGCTGTATTATATGTCCATATCATTCAGA 3268655 37 100.0 35 ..................................... GGCTGAAAAAAGCGATCCGTCCGGCAATCTACATT 3268583 37 100.0 37 ..................................... TGAAATTTTCAGTTCCTACCATTCCACTATGAACCAT 3268509 37 100.0 36 ..................................... ACCGAACAAGCAAAACTCATGGGTGAAACGACCAGA 3268436 37 100.0 36 ..................................... GGGAGTGGTTCGGGTATGGAATAGTATTTTAGTCTG 3268363 37 100.0 35 ..................................... CAAGTTCAGACCTTGATTTTAATTTATTCTTAACA 3268291 37 100.0 35 ..................................... TTTTTTTAGTTGAAACAGAGCCAACTCGACCAGTT 3268219 37 100.0 36 ..................................... CTTGTGATCGTATTCCAATATACAGTCGCTGTCAGG 3268146 37 100.0 35 ..................................... AAACGTTCAAACTTTATAAAACAACTCGCAGTTAT 3268074 37 100.0 35 ..................................... CCGGGATTACAGAAGAGTCGTTTCACTCTTATCTC 3268002 37 100.0 37 ..................................... AAGCTGACCGAAAGCTTCTAAAACCGTATTTGTTGCG 3267928 37 100.0 35 ..................................... TAGCGGCGGTCATGGCAGCGTCAGTTATTAGGTTA 3267856 37 100.0 37 ..................................... TAACATGCCCAATCCAAATCCAACTCTTTCAGGTCAT 3267782 37 100.0 37 ..................................... CCCATATACCAGGCTGTAACCAGTCAAAGGTTTCCAG 3267708 37 100.0 36 ..................................... TAGATTTTTCCAGATTCCCAGCATGTTCTTTTTAGT 3267635 37 100.0 36 ..................................... TCATTGTTGCGATATTGTTAGGAATTTCAGAACAGA 3267562 37 100.0 36 ..................................... ACAGCTCGTTATTGTTATGCTTGTCAGGATGACAGA 3267489 37 100.0 36 ..................................... TTTCAGCGTCTTGTGTTTCAACAGCAACAGTTTTAG 3267416 37 100.0 36 ..................................... CAAACAGAGGTATTAAGGGCAGTGAAGCTGGTAATG 3267343 37 100.0 35 ..................................... TCTGATAAAAACTCCAAAGAATTAGAAAATATTAA 3267271 37 100.0 36 ..................................... TACAAGCGGAGCTATATCAGGTTGAGATTCTAAAGC 3267198 37 100.0 37 ..................................... TATTTTGCTATTTGGTTTGTCATCTTATTTTTCTCCT 3267124 37 100.0 35 ..................................... TTTCAGCGTCTTGTGTTTCAACAGCAACAGTTTTA 3267052 37 100.0 36 ..................................... CCCCAGGGCTTGACTGAGTTCTTAATTTTTCCAGTG 3266979 37 100.0 35 ..................................... AAAATATCATTAGGTGAAGGATTAAATACTAATTT 3266907 37 100.0 36 ..................................... TAAAAGGTGTTTATAACACTGATTCAAAAGAGTTCC 3266834 37 100.0 37 ..................................... ATTTGTGGGAGTGTCGTATATTGTCCGTTTACATCCG 3266760 37 100.0 35 ..................................... CTGTCCTTTTCAAAGGAAAAGCCAGTTTAAACTTC 3266688 37 100.0 36 ..................................... CATATTCATCAATATCTACAATGACAGGCAAGCCAT 3266615 37 100.0 35 ..................................... CATATACTGTCAAGTTCTGCCTGTTCTGTTGCCTC 3266543 37 100.0 36 ..................................... CTGGGTATCCGGTCGTCTGACACAAGATAAAACACG 3266470 37 100.0 35 ..................................... TAGCAGTGCCCATTTTATTTATTTCATGAGATACC 3266398 37 100.0 35 ..................................... CCAGGGCAACAATTACGCTGGATTTTGAAAACCCT 3266326 37 100.0 36 ..................................... TTTCAGCGTCTTGTGTTTCAACAGCAACAGTTTTAG 3266253 37 100.0 37 ..................................... TCAATTTACTTTTCAAGGTGCTGATTGCCTCAATAAT 3266179 37 100.0 37 ..................................... TACCAATAAACTCACTCCTGATTAAATCTTATGCACT 3266105 37 100.0 35 ..................................... CTGCATTACTTGCTAAAGCCATAATTTTATTCCTT 3266033 37 100.0 35 ..................................... TGTGTTGTGTATGTGCCTGTTCTGTGGCTGTTAAA 3265961 37 100.0 37 ..................................... TAATTCGTTTGTGTCTGCTAATATATCTGTAATACTC 3265887 37 100.0 37 ..................................... AAGCAGGTGTCATGGCAGCATCAGTTATCAAATTAGC 3265813 37 100.0 36 ..................................... CTATTGACATTTTATAAATCCTTTTTTTTCTTGAAT 3265740 37 100.0 37 ..................................... ACACCAGGTTATTGACATTGTTTATCTTTGGCAGCCT 3265666 37 100.0 36 ..................................... TTATAGTCTTTCTTATCTTACCAGTTCCAGCACTTT 3265593 37 100.0 36 ..................................... TGTCTGCCAATATATCAGTTATGCTTGCATTGTCAG 3265520 37 100.0 36 ..................................... AAGTTTTTTTCATGGTTTTAGCTCCTCTCTATTTTA 3265447 37 100.0 36 ..................................... CCTGTCATTATGCCCCCCGGTTAATACCTGTAAATC 3265374 37 100.0 36 ..................................... AATGGTAAACCCATGACGGTAACTGTTGAAGTCAAG 3265301 37 100.0 35 ..................................... TATATTGTAGTATTTTCTTAATCATTTTGTATCCT 3265229 37 100.0 36 ..................................... ATCTTGTAGCATTAAATAATGGAATTATTTATTTTC 3265156 37 100.0 36 ..................................... CCTGGTTTATATCCAGTCATTTTTTTAAAGATTCTG 3265083 37 100.0 36 ..................................... TTGAGCATAAAAAGGGGTTTATAATGAGCATATCAA 3265010 37 100.0 35 ..................................... TAAAACGGATTCAACTGCATCGTATTCCGCCCGGG 3264938 37 100.0 34 ..................................... TTTTTTCAAATGGTAGGCCGGGGGGAAGGATTGC 3264867 37 100.0 35 ..................................... AATCCTGCAAAGCGTCCCGGCCATTATTGGCTTGT 3264795 37 100.0 36 ..................................... TATGATGCTGGCGGTGTCTTTACGTCCGTTGCAAAG 3264722 37 100.0 35 ..................................... TCATTTTTGCAAGATCAATCCTTGTGCGATTTAAT 3264650 37 100.0 36 ..................................... CTATGTAGCCGTTCCTTACCAGGGCTTCGAATAACC 3264577 37 100.0 35 ..................................... CCATTTTAATTTTTGTATTCATTACAGCACCTTTC 3264505 37 100.0 36 ..................................... AGAAATTACAATATCTTGTAGATTGAACAAGAAATG 3264432 37 100.0 36 ..................................... TTCTGATTCCATATAAACTCCTTTAATACTGGGACT 3264359 37 100.0 36 ..................................... CACATATGGAACATGGAAAAGTTTCACAATAAAGAT 3264286 37 100.0 36 ..................................... GTGCAAGGCAAGTCAAAAAAGGTGTGTCATACAAGC 3264213 37 100.0 36 ..................................... CAGGGCAGCAAGCACAACAACAAACAACCAGCTTAC 3264140 37 100.0 36 ..................................... ACGGCGGACACATGTTGATCTTTTCCCGATTTCAAT 3264067 37 100.0 35 ..................................... CCATAGGCAGTAGTGCAGGACAGGGCGTAGTTTCA 3263995 37 100.0 36 ..................................... CATGTTTTCAGTCTCCTTTAAGTTTTATTTTATTAG 3263922 37 100.0 35 ..................................... GATTCTTTCTCTAACTGCTATAATAGTTTCATTAT 3263850 37 100.0 36 ..................................... AATAAATCCAGCTAAATATGTGAATCTTTCCCTATC 3263777 37 100.0 37 ..................................... TAATACTTGCTTGTTTACAAGGGAATGGTAAAGATTC 3263703 37 100.0 35 ..................................... TTATTGCCAGCCGTCAAACACTGATAAATATGCTT 3263631 37 100.0 36 ..................................... AATTGCCTTTCCCGGCACTCAGTATATCCGTCATGG 3263558 37 100.0 35 ..................................... TTTTATAATTGCGCTTTGGTAGCCTGCGTCATAAA 3263486 37 100.0 36 ..................................... AAGAAAAATACCCATAAGACAGAACACAATTTTACT 3263413 37 100.0 37 ..................................... AATTACAGGAGAGTGTTTTTAAAACAATTACTGTACT 3263339 37 100.0 36 ..................................... AATACTCAATATATATCTATTGCAATCAGTATCGTA 3263266 37 100.0 38 ..................................... CTAACATAAAAGCCATGCCGGAACCGGATGTCATACCG 3263191 37 100.0 36 ..................................... CGATAACTGCAGGTGTCCTGTATGCCGGACTCAATC 3263118 37 100.0 36 ..................................... CCAAAAGCGCAACGGTTTTTACTGAAATTGAATCTG 3263045 37 100.0 36 ..................................... CATTTTCAATTGTCATCAGGGCAAAATTCAGGACAC 3262972 37 100.0 36 ..................................... CATTTTCAATTGTCATCAGGGCAAAATTCAGGACAC 3262899 37 100.0 35 ..................................... AAGGGAGTTATTTTTTATGGCTGATTCGGTTAATC 3262827 37 100.0 36 ..................................... TTTAATTTCGGAAACATCCTTGAAGCACATATGATT 3262754 37 100.0 35 ..................................... TTTGGTTCTGTTGCAGTGCATTAAGCGGTCGTTTC 3262682 37 100.0 35 ..................................... GCAATTCTTTCATATTGTCCCTTTCAATTTTACAG 3262610 37 100.0 37 ..................................... CGCCTAATTCCTCTGCTTTCTCAATTATCAGTTTATG 3262536 37 100.0 36 ..................................... TCTATGGATAGTATAGTACAAATCTTTTACAATCCA 3262463 37 100.0 36 ..................................... TTGTGGCCGCAAGACCTACGGTCTGATCGTCAACGA 3262390 37 100.0 36 ..................................... CTGCCGGGACGGTTTTTTCGTAATAGTCCAGAATAT 3262317 37 100.0 35 ..................................... ATTCAACAGGTTTCGGGTCTTCTGTTTTGGTAGGC 3262245 37 100.0 37 ..................................... GCCGCTTGGTAGTATAATATAAATCTTTTACTATATA 3262171 37 100.0 36 ..................................... TTTATTGCTGCGGCCAGGGCAGTCCCGACCATTAAT 3262098 37 100.0 37 ..................................... ATATTGGTACTGATAGAACCCCAACTACAGCTACGAT 3262024 37 100.0 35 ..................................... CAAACACGAATTAATGAGGAGGGCGGCGATCTGCT 3261952 37 100.0 37 ..................................... AGATTTGACTCCAACGTAAATAACGAAGAAGCCTAGT 3261878 37 100.0 36 ..................................... AAATGGTGTCAGTCTGCTTTTGGCATGAATCGTGTA 3261805 37 100.0 37 ..................................... AGTCAACGTTCAGGAAGGAGTTAATTATGTCAACTGG 3261731 37 100.0 36 ..................................... ATAAGTGCTGCCGGGTTGCTGGTAATTGCTGATGTT 3261658 37 100.0 34 ..................................... CTCCATACGTTAAGCTCCTGCTGACAATGTTTTC 3261587 37 100.0 36 ..................................... AACCGTCTATCTTTAGCGGGCACTATGAGAACCTGA 3261514 37 100.0 36 ..................................... CAGCCCTTAGCGATCTTAGTCGTCAATTTGAATATG 3261441 37 100.0 36 ..................................... AAATATCATAGGCGCTTGTATGATGAAAAAATCAAT 3261368 37 100.0 35 ..................................... TCCTCTTCGGTATTTCGTATATTTGAGCCAAATTT 3261296 37 100.0 35 ..................................... CATGGTTTTGACTTCCCTTGAGCTTTTAAGCCTAA 3261224 37 100.0 35 ..................................... TTCATAGAGCATAAAGGCATGATAGGTAAGAAGAC 3261152 37 100.0 36 ..................................... CAAGCATTTTTTAAGAAATCCTTTGTTGATAATTTA 3261079 37 100.0 36 ..................................... GTAAGATATTTTTGTTGAGCCTGATAGTATTGACTG 3261006 37 100.0 36 ..................................... TTAATATCTATCTCTTCCCGGCAAAACTCAGCCCAT 3260933 37 100.0 36 ..................................... AAGTCTCGCCTGATTCCATAGTTTTTTCATTGCCTG 3260860 37 100.0 37 ..................................... AATCAGGCTTTGATTGCGGCTTTATCTCGTTTCCGAA 3260786 37 100.0 36 ..................................... ATGCAATTTGGCTTTCAGCAATATCTTTTTGTATTT 3260713 37 100.0 36 ..................................... ATGCAATTTGGCTTTCAGCAATATCTTTTTGTATTT 3260640 37 100.0 37 ..................................... ATCGGAATTATCATATATTCAATAGCCGCTGTTGCTG 3260566 37 100.0 36 ..................................... CAAAAACAAAATGCTGCTGGCTGTCTTACCTGGAAG 3260493 37 100.0 35 ..................................... CTGGTAAAAGATTCCCTGCGTCAAAGCAGCATATG 3260421 37 100.0 37 ..................................... AATTGTTTCCAGATGTCACAGGCCGCTTAATTATCCT 3260347 37 100.0 36 ..................................... AGATGCAGCCCTCTTATTATAATCAAAATTACATAC 3260274 37 100.0 36 ..................................... TTCTTTACTTCCTGCCTTTTCCTGCTGCTTTTTATC 3260201 37 100.0 36 ..................................... TTTGCATCAATCCATACATGATTGTCTGGTGGTAGT 3260128 37 100.0 37 ..................................... AACCAGCGGCTACACCTCTAAGCATATGATTACAAAA 3260054 37 100.0 35 ..................................... ATTATATATTGTATTATGTACATTGCTTAATTCTT 3259982 37 100.0 35 ..................................... TTCATTTTCGCCCTCCCACAATCCTTTTTTCTCAA 3259910 37 100.0 37 ..................................... ACCATACCCATAAAATCCAGGATATGATAACAAGCGA 3259836 37 100.0 36 ..................................... CCGGAAATGAAAAACCCTGTTCACTGCAAACTTTCA 3259763 37 100.0 35 ..................................... TCTCTGCCTGTTGTTTTGGCTGCCCTGCTTGCTGA 3259691 37 100.0 36 ..................................... CCGGATGGCGGAGCGATTACAAAAGTTTTTGAGTAC 3259618 37 100.0 35 ..................................... CTGCACTTCGCCTGTTTTTCTTTGTAGTTTGTTTG 3259546 37 100.0 36 ..................................... AGGAAATGGGAGATGTATCCCAAGAAGAGCTTTCAA 3259473 37 100.0 36 ..................................... TGCCTCATTAACTTCTGGATAACTTGAATATCAGTT 3259400 37 100.0 36 ..................................... TCAGGCTGCAATCTGTCAAGGTAGGCGGTGCGCTTG 3259327 37 100.0 36 ..................................... TAGTAACATCCCATGCCGGCACATATGTGTATCCTG 3259254 37 100.0 37 ..................................... TTACCCTCAACATATTCCGTTACTCCATAATTATTAA 3259180 37 100.0 36 ..................................... TCAGGCTGCAATCTGTCAAGGTAGGCGGTGCGCTTG 3259107 37 100.0 35 ..................................... TATATTAGAAAAACAAAAACCGCTGTGAAATCAAT 3259035 37 100.0 37 ..................................... GTCTGCTGGTCATGGATTTTATTCCAGGAGAGCATAT 3258961 37 100.0 36 ..................................... TCAACTGCGGCATCTATGGCAATGTTTTCATCATCT 3258888 37 100.0 38 ..................................... TTTTCATCCCCCACCAGCCCTTTTAATATCCGGATCAC 3258813 37 100.0 37 ..................................... TTGTCAACGATCAATGTTACCTGATCTATAAAAACAA 3258739 37 100.0 36 ..................................... CTTATGGCAGATGTAACCTTGTAACCTGAAAATGTT 3258666 37 100.0 37 ..................................... AGATGAAATCCCTGCTGCTGTCTCCTTCTGCATTGCC 3258592 37 100.0 36 ..................................... CGAAGGCATACACAGGCAACAGGCCAGAAAATAAAA 3258519 37 100.0 36 ..................................... TCCGATGGCACTGGCAGCGGGGATGCCGGGGATGTG 3258446 37 100.0 36 ..................................... TTGTGTACTGGTCTATCTGCTCTTCTTTAAATTCCA 3258373 37 100.0 35 ..................................... TCCTGGTTGCGGTTTGAAGATCATTACAGCCTCCT 3258301 37 100.0 36 ..................................... TAAATTTTATTGAAATATTGCCGGTCTCCTGCTTTG 3258228 37 100.0 37 ..................................... CCAGCATTTCTTCAATATTGCCGCCTTTGTTGTTTCT 3258154 37 100.0 37 ..................................... CACGATTTACTGTAACGCACCTGAGCGGTTTATTTAT 3258080 37 100.0 37 ..................................... ATGTTTTAATGGCCAACACAGGGGGAGGGGTAAGAAA 3258006 37 100.0 36 ..................................... TTACATTTTCAGTAGTTGTGCCCCATTTAAGAGTGC 3257933 37 100.0 36 ..................................... ACAGCTTGACAAGCATTGTAAGCATAGTTTTTTTTA 3257860 37 100.0 36 ..................................... TCCTCATCCCAAACCCTCCCAATGTTCAACTGATGA 3257787 37 100.0 35 ..................................... GCAATCTCTGTCCGTGTCATATCAAAAAGCTTATT 3257715 37 100.0 37 ..................................... ATTTAGATGGGAATAGAATTTATTATGATGCTAATCA 3257641 37 100.0 159 ..................................... CGAAAAGGCCGAAGCCTTTGGCATTGATTACGTCCTGCACGCAGTTGTAAGCACCTGCACATAAATTTTGTAACATATTGTAGGGGCAGCCCCCTGTGGCTGCCCTCGCTGCAAGGGCAGGCACAGGGGCCTGCCCCTACGGATGTTATGAAATTTTTG 3257445 37 78.4 0 A.G.GGTACT........................... | ========== ====== ====== ====== ===================================== =============================================================================================================================================================== ================== 186 37 99.9 37 CTCACAGTTGTACTTCCATGAAAACAAGGATTGAAAC # Left flank : TAAATTTCAACTGGTTTTTTACGGCAAGTTGATTCAGGAACATTTTCAAGTACAAGTCAATAAAGGCTTCCTTATTTATACAAGAAGCAGTAATAAGCTTGTTGAAGTTAATATTACAGAAAAAATGTACAGTGATCTGGATGAAATTATCAAAAAATTAATGAAAGTTATTCTGATGGGAATTTATCCAGAACCTACAAAATACAACGCCAGGTGTTCTGACTGCTGTTATAGAAATATTTGTGAACAGGTTATATAAAAGTATCTAATTTTCTTTATCTTTTCTTGATTTATTACCAGCCATGTGATATTCATACGTGTAAATTATTTCAATATTAGCAAGTTTTGTATAAAAAATTTATAAATTTAAATACTTAACGTTACTCTATCAAACAACAATTTAAGATATAATAGTAAAAAAATGAGCAAATCAAGCAAATATGGTTCTTTGACAATAGAATATAACCATCTTGTTTTAAAACCGATTCAGCCAGATAGCT # Right flank : ATCACTATCCAGGCTTTTAAGTACCTGTGCATAAATTTTACTCTGTTTTTAATATATACGATTGCCATTGTAGAGACGTTACATGTAACGTCTCTACATTTGGACAAGGAAATTTTTATAACATTTGCAGGGGCTGCCACAAGGGGCTTGTCCCTGCAATAAATGTTACAGAATTTATTTACAGGAGTTTAAGGAGGAAATTATGGGATTGTTATTCATCATCTGATTTTGTATCTTCAGATTTCTGGGCTTCAGGAGTATTTTCAGGTTCTTCAAGATCGTCTTCCAATGGTTTTTTTCCAAATATTTTAGCCCCGATTATGCTGATTTCATAAAGCACCATTAAAGGAACTGCCATCATTATTTGTGTAACAACATCAGGCGGGGTTAGAATTGCAGCACCTATGAAAAATAAGAGCAGGGCATATTTCCTGTTTTTTTTCAGAAATTCAGGTGTAACAATGCCGATTCTTGCCATAGCTGTAAGAACAAGGGGAAGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCACAGTTGTACTTCCATGAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 5 3621210-3620518 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061799.1 Desulfonema limicola strain 5ac10 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 3621209 36 100.0 36 .................................... GCTGAACGCAGGTGATACCGGTTATTTTTGTGCCGT 3621137 36 100.0 37 .................................... TTGATATTCTTTACGGCGTAAAGGTTCTAGATCCTAA 3621064 36 100.0 36 .................................... TTATAGATATGCTTAACCAGTGATTACAGCTTTTTT 3620992 36 100.0 36 .................................... ATGATGGGGACCCGCTTACATTTCCCGGTTCAACTG 3620920 36 100.0 37 .................................... TTGATATTCTTTACGGCGTAAAGGTTCTAGATCCTAA 3620847 36 100.0 36 .................................... TTATAGATATGCTTAACCAGTGATTACAGCTTTTTT 3620775 36 100.0 36 .................................... ATGATGGGGACCCGCTTACATTTCCCGGTTCAACTG 3620703 36 100.0 36 .................................... TTTATATTTTGGTCTGATGATACCGAAACATCATAA 3620631 36 100.0 37 .................................... GGTAAAAAGGATGCCTGTCCCGCTCACGGAAATCCCA 3620558 35 88.9 0 ......................-.....T..T...A | CTCTT,T [3620527,3620533] ========== ====== ====== ====== ==================================== ===================================== ================== 10 36 98.9 36 GCAAGAAAAGCTTAATTCCCTGTAAGGGATTGAAAC # Left flank : GGAGAATAGGTTTCTTCAAGAATCTGTATTACAGGATCAAAATTCAAGGATGAAAGGATATTTATTTCTTTTTGATAATTTTCAAGAGTACTTCTGAACTCACTGGTTTCATTAAAATGACTAATGTATTTTCTCAAATGTGCCAAATATTCTGAATGAAGTACCGGTTCTTTTTTATCATTTTGTAAATCCGGCTGTTCCTGCACGGCCCCGGTTTTTCCGGTGACTTAGTCATAATTTTCACCTCCTTTCTTAGAAAATTGCAGACAACAAGTCAGGTGGTGAGGATCACCCGGCAGTTCTGCCTGGCCTGCCGGGTGCAGCTAATCTTAATCATAATATAAAAACCGAGAGCTAAATGTAAACACCTGAAAACGTTTGACATGCTATTTTTTCAACATTTTTTTGTTTAATTTTCAAAGATTTGTAAAACCGAGAGGATTCCCCTGTAAGGGATTGAAACATTAGCAGTACAGACAATCTTTAGTGCCATATTTGAT # Right flank : ACCGAGAAGGTGCGGTCTTGGTTGGTGCGGCTGATCAATGTAGATATTAGATATATATCTTAGTTTGGCAGGATTTTATTCTGAAAAGCGGCAAAAATTATAAGAGTGTAACCAAAATTAAGCACAAACTTTTTCTTTTATATTAAGGGAATTATAATCATCTGCTATAAAGTCTTTTTCTCTAACCTGACTTGTAAAAAATTCCCAGTAACTATCCCAATCCTTACTTTTAACAACAGATCTTAATCTTAAAACTGACTCTGCCCCGTTAATACCCCACCTGGCTCCGGAAATTTCCATTCTGTCTTTGACCACATGACTGCAAGCTGATTCAACAACTCCAGTTCCTATTGGATAGCCTTTAGCCAAATACTCATCATATTTCATGTACTCCCTGTGATTTTTAAAATATGTTATAACTTTTTTGAACTTTTCCTGATGAGACTTCTTCTTCCATTTCGTTTTCTGCATTTCTGTCTGAAGTTCCATAATATATGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAAGAAAAGCTTAATTCCCTGTAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 6 3624219-3623442 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061799.1 Desulfonema limicola strain 5ac10 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 3624218 36 100.0 36 .................................... GAAATACCAGTTCCTGAATGCGATGCAGAACATCTT 3624146 36 100.0 37 .................................... ATCCCAGTATTTGACGGCCTGGCTTGCGGCTTTCTTA 3624073 36 100.0 37 .................................... TGAATAAAGCACTGATTGAGTCGAAACGGCTAAAAGC 3624000 36 100.0 38 .................................... TTCCACAAAAAATCAGTAAATGAAAAAATTTCAATTTC 3623926 36 100.0 38 .................................... TGATAATATCTATGGGAGTCATGTTTTTCACAGAAAAC 3623852 36 100.0 39 .................................... CATATAATGCTGACATTACACCGGCATCACCGGTATATG 3623777 36 100.0 37 .................................... TATTGACAAAGGCGGCTCAATAAAAAATTCTTTATAC 3623704 36 100.0 37 .................................... TTAATTCAGGGCAAATACAATCCTTAACCGCCTGCAA 3623631 36 100.0 37 .................................... TTCACGATTTCAATCTTATGAATCTGCTCCCAGCCTG 3623558 36 100.0 40 .................................... TTTTAGCTTCATTACGGCAATATCTCATGGCCTCGGCCTC 3623482 35 88.9 0 ......................-.....T..A...A | CTCTT,T [3623451,3623457] ========== ====== ====== ====== ==================================== ======================================== ================== 11 36 99.0 38 GCAAGAAAAGCTTAATTCCCTGTAAGGGATTGAAAC # Left flank : GACAATTACGAAGGGTTTAGCATTCGATGAAAAAAAATTACCTGATTGGATACGATATTTCAGATGAAAAGCGGCTTAAAAAAGTTGCAAAGATTGTTTCACGCTTTGGTTCAAGGATTCAGTACAGTTTTTATCACTGTTTTATTTCAAACACACAGAAAATACGCATGAAGGCTCTTTTACAGAAAGAAATCAAAGAAGACGAAGATCAGGTTATTCTGCTGCCCATAACAGTCAATCAGTTAAAGGAAATGGAGTTCATGGGTTTTAAAATTAATCTACAAAATGAGGGAATTATTATTATCTAATCCTGCGGGATGTGATGAAGAATAAAAAACACGGGAACCTCTCGAAAATAAAAAATATTAATAATTTCAGAAGGATTAAAACCATGAGCATTCAAAAAAAATTATCAGCCCCCCAAGTTTTATTCTTGCAAAATAAACCACTCGCATATATACTCCAAAATCCTTGCCAAACAACCACAAAATAAGGGTGCT # Right flank : ACCGAGAAGGTGCGGTCTTGGTTGGTGCGGCTGATCAATGTAGATATTAGATATATATCTTAATTTGGCAGGATTTTATTCTGAAAAGCGGCAAAAATTATAATTGGCTGGTAAAAAAGACTGGAAAATTAAATAATAATAATTAAAATAAGATATAAAGGACATACTCCACCTGTCCGATTCATTTCATTTTTTTGGAAAAAATCGGTTTTGGCTCTTTGAAAATCTAATAATGTAATTTAGCCAGATATCAAGGCGGTTTATTTAAAGGGCCGTCCCTGATATTCGTCAGTATTTTATCAAATTCAATACCTGAAGAATGCGCATCCACAGAGTTATCAGGCAGTTTTTCCGATATTTCTATTTTTAAAAATTCCTTATACATAATTTCAGCATGAATGGCGATATATACCAGAAAGAGGCGGATAAGACTGTAATCAACATTTCTGTGTGCTTTTTCAATATTGTAGTTGTCAATGTATGCATTAACTCTTTCACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAAGAAAAGCTTAATTCCCTGTAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 7 4405250-4388516 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061799.1 Desulfonema limicola strain 5ac10 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================================================================================================================================================== ================== 4405249 37 75.7 129 TCC....T.............T...T...A.....TC AAAAATTTCCTTGTCAAACGTAGAGACAAGGCATGCCTTGTCTCTACAATGGCAATCGTATATTATTAAAAATAGAGTAAAATTTATGCACAGGTACTTGGTTCAGGTTTTTGAATCATTCCTACCTCT CA,G [4405214,4405217] 4405080 37 100.0 33 ..................................... CAGGTACGACTGTTAAGACATCTTTCTCCGCTG 4405010 37 100.0 32 ..................................... GAACCAGAACATAAAACTGGATAGAGCAGTTT 4404941 37 100.0 33 ..................................... CAAAAAAATAGAAGCAGCAGTTAAAGCAGTTGG 4404871 37 100.0 33 ..................................... ACAGATCGAAGAGTTACAAAACTGATTTAATTA 4404801 37 100.0 33 ..................................... ACAGATCGAAGAGTTACAAAACTGATTTAATTA 4404731 37 100.0 33 ..................................... CCCGCAGGTTGTAGTTTACACCTTAACCGGTGT 4404661 37 100.0 32 ..................................... GGAATCCGCACCACCAACGGAGGTAGAAATAC 4404592 37 100.0 33 ..................................... ATAATATATTTCATGAAAGGAAAACGAAATGCA 4404522 37 100.0 32 ..................................... GTTGGGTTAACGGCTGATGGGGGGATGACTCC 4404453 37 100.0 33 ..................................... AGTTGTAAGCAAAGAGGGGTTAGTGGTGGCATT 4404383 37 100.0 34 ..................................... AGAAAAAATTTTCGGAAAAAGAAAAAAAAGAAAG 4404312 37 100.0 33 ..................................... TACAGTTGGCGGCTAACAATATTCATTAAATCT 4404242 37 100.0 33 ..................................... CCCCGAAGGCAGTCAATTGGTGACATTGACGGT 4404172 37 100.0 33 ..................................... TTTATGGCTATCGTGCTGATCCTGATAATCGGT 4404102 37 100.0 33 ..................................... CCAAAATTAATTTTAATTGGGCTGATGGATATG 4404032 37 100.0 32 ..................................... GAAAAATAGGAATAATTGAAGCTATTTACATC 4403963 37 100.0 33 ..................................... GGACGAATCGTCGAACAATGGCGAACCGTTCAT 4403893 37 100.0 33 ..................................... GAGCTTATTATAAGTAAGTGGCGTATTCCGTCA 4403823 37 100.0 33 ..................................... AAAAACCAGGCACCCATCGAGGCTTCGGCCGAA 4403753 37 100.0 33 ..................................... GCCGCTGTTCTCAGAGAGGAATAGGAAGATGTA 4403683 37 100.0 32 ..................................... GCTGAAACCGAAAGGTTTAGGATGGTTGCTTT 4403614 37 100.0 33 ..................................... TAATCCATAGGGAGGAAAGAATTATGTTCATCG 4403544 37 100.0 33 ..................................... AAAGGAGGTATCTATGTGTAAACCTGGAACGAC 4403474 37 100.0 33 ..................................... ACATCAATTTTTTTTAAAAAAAAGGAGAAAAAA 4403404 37 100.0 33 ..................................... AAGAAGAGGCGGCGGTTGCTTTGAAAGAAGCAA 4403334 37 100.0 33 ..................................... TTGAAAAATTGGATGCTTTGATAGAAGCTGCAA 4403264 37 100.0 32 ..................................... TATATAAATCTTTAAGTGGTATCGAAGCAGTT 4403195 37 100.0 32 ..................................... GGAAATGGAATGAACTGGGTATCAACAGGAGG 4403126 37 100.0 34 ..................................... GTTTTCGGGTAAATTGATTAATTCAAACTCTGTT 4403055 37 100.0 31 ..................................... ATTGTTGGGACACTGGTGTCTCTCACTTTGA 4402987 37 100.0 34 ..................................... TTAAACCAATATTTGCTTGAAACGTGTCAAGTTC 4402916 37 100.0 34 ..................................... ACGAACGAATTCATATATGGTAATATCATGTACA 4402845 37 100.0 34 ..................................... CTTCAACAATACTCCAATCAGTAACAGTATTAGT 4402774 37 100.0 31 ..................................... TTAAATGTTTATATGTAGAGAATGTGAAACT 4402706 37 100.0 33 ..................................... GGTGGTGGATTATCATATAGTATTCCTATTGCT 4402636 37 100.0 31 ..................................... GTTGTTATAGAAGAATAAAGTTGTGTTTCGG 4402568 37 100.0 33 ..................................... TTTCCACAAGGGTCGTTGGCTATTACACGTTGG 4402498 37 100.0 33 ..................................... CATGCTTTTTTAGCAATTGGTAAAAATGTTTGT 4402428 37 100.0 33 ..................................... TACAATATGATACCATATACCTGTTGACAACAG 4402358 37 100.0 33 ..................................... TTCATCCCTTTTGAGAATGAATAAATTGCTTGA 4402288 37 100.0 34 ..................................... ATTCCTGTTGTCGGAAGTATTACAAGTACTCTTG 4402217 37 100.0 32 ..................................... CTTGGTTCATGAAACATGTGCCACAAACCATA 4402148 37 100.0 33 ..................................... GACAAAAATATTCCGAGGCATGTTTTGAAGAGG 4402078 37 100.0 34 ..................................... GAATTGGAGACTCTTCATAATTACGAAGAATCTC 4402007 37 100.0 33 ..................................... GAAGGATGCTTTCGGAAAGGTGTACGATTCGAA 4401937 37 100.0 32 ..................................... CCATCTTTATGTGGAGGCGTGGGGCAATTTTT 4401868 37 100.0 33 ..................................... ACCACGTTAGAATAATAGGGACATCAAATGTCC 4401798 37 100.0 32 ..................................... GCGGGGCGTTATATGATCCGTAAAGTCATATA 4401729 37 100.0 33 ..................................... GGGACACGAACACTGGAAGTTCCTGGGCCCCCC 4401659 37 100.0 33 ..................................... GATATGTCGCAGATAATGAAAACATCGTTGATC 4401589 37 100.0 32 ..................................... CTATGTCGGAGGTTCTTGGAAAGTTCATTTTC 4401520 37 100.0 33 ..................................... ATCCTTGTACGTTTGAACCGAAATTATCCCACA 4401450 37 100.0 31 ..................................... GCGCCACCGTGTAATGCGATAATCGTTTTTG 4401382 37 100.0 30 ..................................... GATGAGATTGTTTTTTCAATCTCATCCACT 4401315 37 100.0 31 ..................................... AAATTCTTGATTAAATAATGGGACATTACCT 4401247 37 100.0 32 ..................................... TTATTTTTTGTGTTGGTCGGGGGGAGAGGATT 4401178 37 100.0 33 ..................................... TGCTGTCGGTATATTATGTGTAAAGGCCACAAG 4401108 37 100.0 32 ..................................... GGCCAACTCTGCCTGTTCAACTACCCGACCTC 4401039 37 100.0 31 ..................................... TATTATGAGGATGTCCTCAAGAACGGAGGCC 4400971 37 100.0 33 ..................................... GATGCGGAATGTCCGTATTATCAAACAAATAAC 4400901 37 100.0 31 ..................................... GAAGGTGGGCAGGGCGGAGCCGGTGGCAACG 4400833 37 100.0 33 ..................................... AAAAGATGTTATCATGGCACTACAGATAATAAC 4400763 37 100.0 32 ..................................... AAAAAAGAGAATTAATCCGAGGGAGGAAAACC 4400694 37 100.0 32 ..................................... AACATCGAACTCCACGTGACGAACTATGTCAC 4400625 37 100.0 34 ..................................... AAAATGGGAGTAGAGATAAAGTCAGTAGTTGTAG 4400554 37 100.0 31 ..................................... CTGGCAAAGTGGATGGTGGTCAACCCAGAGT 4400486 37 100.0 32 ..................................... TATGATAGCTAATGGAATGACATCTATTCTAA 4400417 37 100.0 36 ..................................... CGTACACAGTCAGAAATACTCAGGACATTATGGTAG 4400344 37 100.0 32 ..................................... CTCTTCCTGGTACTTATGCCCCGACTCACAGC 4400275 37 100.0 32 ..................................... CTCTGGAAATCCTGGGTGAAGTTGACGCTCAC 4400206 37 100.0 34 ..................................... TACTTTTGACATTTAATAATTGACCGAAGCGTCA 4400135 37 100.0 32 ..................................... ATAAAAACAAGCTTTATTACCTTAGGGGTGGA 4400066 37 100.0 32 ..................................... GGGATTCACACGCGACAAGTATGACTCTGTAG 4399997 37 100.0 31 ..................................... TCAAACTGAGTCACTATAAAAGCGCCCTGGG 4399929 37 100.0 33 ..................................... GAGACTGCTTCTGAAATAAGCACTCCTGAAGGT 4399859 37 100.0 32 ..................................... ATAAAAACAAGCTTTATTACCTTAGGGGTGGA 4399790 37 100.0 32 ..................................... GGGATTCACACGCGACAAGTATGACTCTGTAG 4399721 37 100.0 31 ..................................... TCAAACTGAGTCACTATAAAAGCGCCCTGGG 4399653 37 100.0 33 ..................................... GAGACTGCTTCTGAAATAAGCACTCCTGAAGGT 4399583 37 100.0 32 ..................................... GCAAGTTTTGATGATCCTGACACTGGAGGTAT 4399514 37 100.0 32 ..................................... ACTATATTTTTGGAAATGATAGATTTGCTGTA 4399445 37 100.0 33 ..................................... GTTATTATGTAACAAAAGAAAATATTCGACATA 4399375 37 100.0 32 ..................................... CAAAAAAAAGAGATAACAGTCCAGAGATAGTG 4399306 37 100.0 30 ..................................... ATAATAATATCTTCCATATTACATACAACG 4399239 37 100.0 33 ..................................... AAATAGAGGCAGTACCAGCAGATGTACCGCTGG 4399169 37 100.0 31 ..................................... AAAAGTATATGTTGTATCATCTACTATCTGA 4399101 37 100.0 32 ..................................... ACAATTCTAGTGGTCAATGATGAAGGGAAGCC 4399032 37 100.0 32 ..................................... TCTGTAGATTTTTATCTACAGAAGCTCTTCAT 4398963 37 100.0 33 ..................................... TTTTACTAAACCTACTTCCATTGTTGGCTCTCC 4398893 37 100.0 31 ..................................... TTCATGCTGATGGGGGTGGGTTTTTGGTTTC 4398825 37 100.0 34 ..................................... GATGGGTTCGAGGAAGAACAACGGCAAATACTGG 4398754 37 100.0 32 ..................................... AAATTTAGAAGCAATAAAAGATCTTTTGGTCC 4398685 37 100.0 32 ..................................... GTCTTTTCCTCCAAATTAAGCAGGTTTGGACC 4398616 37 100.0 33 ..................................... CAGTGCTTTTCCTTGGAGTGGCCTCATGGATCG 4398546 37 100.0 33 ..................................... CGAACGTATTCCAGGAAGGAGAATTTTCTCTTT 4398476 37 100.0 31 ..................................... GGGGTTTCCTCTGGTTACGGAAAAGCCAAAG 4398408 37 100.0 33 ..................................... CCAAGGAAAAGGAACATCTGCTCTCTTCTTTTT 4398338 37 100.0 32 ..................................... TAATTTCCTGGAAGGCTACGATGAAAATCGCA 4398269 37 100.0 32 ..................................... ATAATCATAGAAGTTTTAGCGCGAGCAATATT 4398200 37 100.0 33 ..................................... CCTGGGTCTGGCCAATCCAGAGTTTTCCACCCC 4398130 37 100.0 32 ..................................... ATCCGAGGATGGAAAACCGGTGAAGCTTTGCC 4398061 37 100.0 33 ..................................... CCTGTTTAACAGCCCGACCAGCCAAGGTCCGGG 4397991 37 100.0 32 ..................................... ATAACAGTTGACCGGGACGCAACCCATGAGGT 4397922 37 100.0 32 ..................................... AAAAACGCCACCTGGATCATTGAAAACAGATT 4397853 37 100.0 32 ..................................... CTCCTGTGGCAGAGATACATCAATATCTCTGC 4397784 37 100.0 33 ..................................... CTACGGCAACTGGCGGGTGAATTTCCCCGTCGG 4397714 37 100.0 32 ..................................... AGACGAAACACTCTGTTGGGAAAAACCTGAAA 4397645 37 100.0 31 ..................................... GGAGAAGAGGTTCGTATCATAAAAATATTCT 4397577 37 100.0 32 ..................................... CAAGTGGGGCGGAAATCCGGCCCGTGTCCAGG 4397508 37 100.0 35 ..................................... AGTATCCTGATGATTCTCTGCCTGATGGGCTGTTC 4397436 37 100.0 33 ..................................... CACAACTACGGAGAATACAATGGAACTATGCGC 4397366 37 100.0 32 ..................................... TAAAGTTAGTGTCTTAATAGAAGAAAACATGC 4397297 37 100.0 32 ..................................... ACCATAAAGCTATATATGATCGACCGGTTTAC 4397228 37 100.0 33 ..................................... CAAACTATTAACCATGGTGGATTCAGGAGAATT 4397158 37 100.0 33 ..................................... GCCGACCGTGATGGAGCTTATGCTGCAACTGCT 4397088 37 100.0 32 ..................................... TCTCATCTTCAATCGGTACTACTGGAACAGGC 4397019 37 100.0 32 ..................................... GGCGAATCAGCCTGGTTGGATACAAACACTCT 4396950 37 100.0 33 ..................................... AAAATGATTGAATACGAAAGTAAGATGTACAGC 4396880 37 100.0 32 ..................................... GTTCTCTGTTTTCTGGGCTGTTCCAGTCCGGA 4396811 37 100.0 32 ..................................... AGAGAATTAATCCGAGTGAGGAAAACGGCAAT 4396742 37 100.0 33 ..................................... GATTGAACTCTTGTTTACCGTGTAGGAGAAAAA 4396672 37 100.0 32 ..................................... CTTCGCGTGGCTTTGGGTGGCGATAGTCCTGT 4396603 37 100.0 32 ..................................... CCTGGGAAGTTAAAGAAGGAAGATGTAAGTTC 4396534 37 100.0 32 ..................................... TATATACTCCGGGATTTAGCTCATAGAGTGTT 4396465 37 100.0 31 ..................................... AGCCCGGCAGGGATATACGATAAAAATGTAT 4396397 37 100.0 32 ..................................... CTTGCGCTGCAGCGGCTCAGAAACTGGCCGAC 4396328 37 100.0 33 ..................................... GCGCACTCCTTCACAAGAGGAGAAGTCGGAGGT 4396258 37 100.0 35 ..................................... CGAAGTATTTGGTGCCAGCGATGCCGAAATCTGAC 4396186 37 100.0 32 ..................................... TAAAAAAGGAGGCTATTCAAACCTCCCTTGAT 4396117 37 100.0 32 ..................................... GGAAGTACCGATGGGAAGATTGTGGAAATTAA 4396048 37 100.0 31 ..................................... GATTCCACTGATCAAAAAACCGGTGTCTGAG 4395980 37 100.0 34 ..................................... TTACTGGTGACGTTGTACCGAATACTCCAATTGG 4395909 37 100.0 34 ..................................... CCAGCAAACTACCAGTATAACCTGAGACTCAGTG 4395838 37 100.0 33 ..................................... AAAAGGAGGGATGAGCATGATAGAGGCTATGAG 4395768 37 94.6 171 ...................................CA GGGAGTCCGGTGGTTTGCTAAAATCATAGATAATTGAAATGCACCAAAATTTTGAAGGCTTGTCAATCCTGTCTTTGTTAGAATTGGTGCAAATCAAAAAATCTGTTTTAGTAAAAAGAACCGGACTCCCTGTCTGAATAATCACTGGAAACAGGTGAAGCCATATCTGTT 4395560 37 100.0 33 ..................................... GTGGCGGAAATGATGTACTGAGCAGAACCAATT 4395490 37 100.0 32 ..................................... AGTTCACAATCGACAAGGATGATCCGCACAAT 4395421 37 100.0 33 ..................................... GTTGTTGCTCCTGATGATGATCTTGTAGATTTG 4395351 37 100.0 33 ..................................... AAACCCCTACTTTTTCTTTGCACATAATTTACC 4395281 37 100.0 32 ..................................... CTGGCGGCAATGGTGATCCGGGCATATCAAAG 4395212 37 100.0 33 ..................................... CATCTCCTCTCATTGGACCGCTGGCGCTGGAAG 4395142 37 100.0 34 ..................................... GTAATGGAAAAATTGTGGAGATTATAGCAACTTT 4395071 37 100.0 32 ..................................... TAACACTTCTGTTACAGTGTTCTGGTCAGGAT 4395002 37 100.0 32 ..................................... GTCCTTTTTCTTCGTTTAGTACAGCTAATTAT 4394933 37 100.0 33 ..................................... TAAAGAGATGTCTAAAGTACAGGGGTATACGAC 4394863 37 100.0 32 ..................................... GGAAGCCAAGGTTGAATATAATGGACTTAAAA 4394794 37 100.0 32 ..................................... TTGGGTGGATTTGGAGAAGGTGGTTGTTGTGC 4394725 37 100.0 34 ..................................... CTTTTTTCAAAGCAATAATCGCCAGCCTTATTGG 4394654 37 100.0 32 ..................................... TTATGCTGGTGCGTTAGCGTTCGGCAATGAGG 4394585 37 100.0 32 ..................................... GGGCGGAACCAGATACCTGCTGAAAGAGGGAG 4394516 37 100.0 31 ..................................... TCTGTAAATGCGAGAATAGATAAAGTTCCTT 4394448 37 100.0 32 ..................................... TTACAACTTGTGAAGACTGGAAACAAGGCGAA 4394379 37 100.0 32 ..................................... TTGGAAGTAACTGAATAATGCAGATAGTATTC 4394310 37 100.0 31 ..................................... CAGGATGCTATTGAAAAAGGGGCCAGAGCCG 4394242 37 100.0 31 ..................................... CCAGACAGAATTTTATCCGGATCGTGGGGGA 4394174 37 100.0 33 ..................................... AGCATGGGCTTTTCTTATGATCGGGAACAGGAT 4394104 37 100.0 32 ..................................... CCCATACGGGATCAATAAGTTGGGGGGAATTG 4394035 37 100.0 32 ..................................... GATTATTCTTTCTTAATAATAAGCTCTATGCT 4393966 37 100.0 33 ..................................... GTACCTGATGTCAATGTCCCTGCATTTACAGGT 4393896 37 100.0 33 ..................................... CTGCTATTGATTTCAATTCAATTAAGCAATATT 4393826 37 100.0 32 ..................................... ATTTACTAATGTGTCATAGCTAAATGTTATAA 4393757 37 100.0 34 ..................................... CCATCCACGCCCAGAAATGGGTTGACAATGTGAT 4393686 37 100.0 33 ..................................... GATTCAATTATAGGAATAATGCTTGAAAGTAAC 4393616 37 100.0 31 ..................................... GAACAGGATCTGTGATTGATTATCATAGTCA 4393548 37 100.0 31 ..................................... GGCTCAAGCTTCTCATGCGCAGACCGAATTA 4393480 37 100.0 32 ..................................... GTCGCTGTATAATGGAACAACCTTGCAGGGAT 4393411 37 100.0 32 ..................................... TTGCAACATATTCGATTAATCCTGGTGTTTCT 4393342 37 100.0 33 ..................................... AAAACGGGGCACGAAACTGTTAAGAAAGTTCCG 4393272 37 100.0 32 ..................................... TCAATAATGTTAGACTCCATAACTTCGAGTTT 4393203 37 100.0 32 ..................................... GATTTATTCTGACGATTAATGCCGAGAATATG 4393134 37 100.0 34 ..................................... GGATTGGTAATTGTTGTTGTGCTGGCCATTTTTC 4393063 37 100.0 32 ..................................... AAGGGCAGTGTTTTTTATAAAAAAATGTCAAG 4392994 37 100.0 34 ..................................... GCATGGACATTTGGAATTGGGGCAATGCAACCAT 4392923 37 100.0 32 ..................................... AAATATGATAATTACATCATCGATGTCCCTGT 4392854 37 100.0 32 ..................................... GACCATTTCGGCTGAAAGAGCCGGATGGACAA 4392785 37 100.0 32 ..................................... ACTGTTAATAAAATAATCAACTTTAACGGTTG 4392716 37 100.0 33 ..................................... GGAATTGACGCTCTTGTTAATTCCAGAGCTGAC 4392646 37 100.0 32 ..................................... AAATAAATAAATTATTTGCTTGACATGAATAA 4392577 37 100.0 34 ..................................... GGCTGGCAGTTTAGGCTAGGGGACGGGACGGACG 4392506 37 100.0 32 ..................................... GCGGTTTCGTTGAAATAGACACTGTTTATTTC 4392437 37 100.0 33 ..................................... TAAACCTAACATAGTCATAACCCTCGGCGATAT 4392367 37 100.0 32 ..................................... TCTGTATCCTCAGAAGTTGATGGGTATGATGA 4392298 37 100.0 33 ..................................... GACACAATAAGGATAAACGGAAAAAATGTTTGT 4392228 37 100.0 33 ..................................... AATTCATATATTCGAATCACTTCGTTGGAGTAT 4392158 37 100.0 32 ..................................... AGGTCGGCAATTACAATCCGCCAAGCCAGCCA 4392089 37 100.0 33 ..................................... CTTGTCTTCCACCAGGGAGGAAATCCCTGGGAC 4392019 37 100.0 32 ..................................... ACAAGTTGGTGTCTCAGAGGATTTCGATTTCG 4391950 37 100.0 32 ..................................... GATGCGTACTCCATTTATCGGCAGGGATATAT 4391881 37 100.0 34 ..................................... TGCTTTGAAAAAAGCAAAGAAGCTAGCCAAACAG 4391810 37 100.0 32 ..................................... GCTTGCTATCACTGTGGAAAACTCCTCTCCAA 4391741 37 100.0 32 ..................................... GTCGGTCAGGTGTCCGTCTTTCACAAGAGACC 4391672 37 100.0 31 ..................................... GATTTAGCATTAGCTATAAAGCAGTTTTGTC 4391604 37 100.0 33 ..................................... ATTATCGGAACATCTGATGTCCCGCAAGAAAAC 4391534 37 100.0 33 ..................................... AATTGGTAGATCCTGAACTGCCGGATGTGTATT 4391464 37 100.0 33 ..................................... CTGGAAAAATGCTTTAACCAGGCTGCGGTTGGC 4391394 37 100.0 33 ..................................... GAGCGCCATGATTATTATAGTCATGGCTTTGGC 4391324 37 100.0 33 ..................................... GGTGGAGACCTTGACATTACCACCGTCAAGGTC 4391254 37 100.0 31 ..................................... ATGACAATATTGCATGTCACAGTATAGTGGC 4391186 37 100.0 30 ..................................... GCTACTGTTTATGAAGCGAAAGACATGTAC 4391119 37 100.0 32 ..................................... GGTCACCCGCGTTGCCTAAAGGAAACTCCCTC 4391050 37 100.0 32 ..................................... ACTGATAGACAGAAGTAAGGGCTATACTAGTT 4390981 37 100.0 32 ..................................... CCCCAAGGGTTTCTGGAGGAGTGGACTTGGTT 4390912 37 100.0 32 ..................................... TCCTCATTTTCTTTGAGGAAACTGGAAAGAGC 4390843 37 100.0 32 ..................................... GAAGAGGTGGTTGGCACCGGAAGCTGTGTACC 4390774 37 100.0 33 ..................................... CCAGGTGCCCAGATGGACAGAGATTGTAATGGT 4390704 37 100.0 32 ..................................... GGTAGCGCAGTCTGGTTGCGCGCTCCTCTCAC 4390635 37 100.0 32 ..................................... TGGAAATTTTTGTTCTTTTGATGATGTTGTTG 4390566 37 100.0 32 ..................................... AAAGCTTGCTTCTGGAAAGTATGTGCAATTTG 4390497 37 100.0 33 ..................................... AAAGAGGGTTTGTCAAAAAGTATGTTCCGTATT 4390427 37 100.0 32 ..................................... CTCGCGGCTTCTTTGTGGGGACATTGGTCTTT 4390358 37 100.0 32 ..................................... ATTTACATTGCAGTAATAATCATATTGATTGT 4390289 37 100.0 33 ..................................... CAATTTCCCCATACTTTTTGACAAACCCTCTTT 4390219 37 100.0 32 ..................................... CGAAGACCTCTGCCCTTTCAAACAAAAACTAA 4390150 37 100.0 32 ..................................... TAACCGCTGGAATAATTCGGCCGGTCAAAGTC 4390081 37 100.0 31 ..................................... TCGGCAGGATTCGAAATCAATACCTGGACAG 4390013 37 100.0 33 ..................................... AAAAAAACAATTTTAAAAAAGGAGATTTATAAT 4389943 37 100.0 33 ..................................... GAGTCGACGCCATGGAAGCATACCTGCTTCCAA 4389873 37 100.0 33 ..................................... TTATTAAATTCCAGTTAAAGAAAAGGAGGTCAC 4389803 37 100.0 33 ..................................... AGGACTGGGTCATTCCAAGGAAATTATTTGGGA 4389733 37 100.0 33 ..................................... GTGGCCAGATACATTAATTGACCATATTAATTG 4389663 37 100.0 32 ..................................... AAAGCTTTTTCAAGAAACAGTAACAGATCTTA 4389594 37 100.0 34 ..................................... ATTAACTATTAATCACTATGGAAGGAAAATTTTA 4389523 37 100.0 31 ..................................... GTGCAGCTTAAAAATACAAACCCCAGGGCTT 4389455 36 97.3 33 .......-............................. CTGGGATTTTTTCAGCAGCACACAGTTCTACTT 4389386 37 100.0 33 ..................................... AATGGTATCATCGCCATTGACACCAGCCCCCAA 4389316 37 100.0 32 ..................................... CTAATGCAGCCTCCCACCACCTAAATCAGACA 4389247 37 100.0 32 ..................................... AACACCTATCGTTGGATTCTGCGTAGATTGTC 4389178 37 100.0 32 ..................................... TCGGTAACTGCGGCGAAGGAAAATCTGAGGTA 4389109 37 100.0 33 ..................................... TGGGCTCTCCGGAGGCTTCGGCCGAAGGCGGGC 4389039 37 100.0 33 ..................................... TAGGGTTGAAAAAATAGGAAACAATAAGTTTTT 4388969 37 100.0 32 ..................................... GAACCCAGCGGAAATGGCGGAAATTGGGGTTG 4388900 37 100.0 33 ..................................... TCGCCAAGCTGTGGAAGGTGACCGATACAGATC 4388830 37 100.0 33 ..................................... CAACTCCTCCCAGAGAGGAGCTTACTTCCAGTT 4388760 37 100.0 32 ..................................... TGAATAGACTCTTTGCCTATTGTCTCTTCAAT 4388691 37 100.0 34 ..................................... TCGGCCAACCCGAGGCATCCGCATTGACGCTTGG 4388620 37 100.0 31 ..................................... AGGAATGTTCGGCGTACCGAACATCTTGGCC 4388552 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================================================================================================================================================== ================== 238 37 99.9 33 GTTTTAACCCCCTTCACTTCCGGGGCATACTCTGAAT # Left flank : CAAAAATAATATAAATTCTGAAATAACACCCACCCCGCCTTTTCTTCTGGGTGCTGCTGTAATCTTCTGGGGATGGCAGACTGGTTTGTGGTTTTTTGCCGTACCTATGGCAGTAATTCTTGAAGTGCCTCGTTTTCTCAAATTCAGATGGGATTTTCAGCCTTTGGATTTTAACAGGATTTCTGATCTCTGCACCCTGCTTTTTCTTGGAATGCTTGCCTGGCTCTTTATATCCAGGCGTACGGTAAGCAGCTAATCAAAAATTTCATATCAAAAAAATTCCTTACCAAACGTAGAGACAAGGCATGCCTTGTCTCTACAATGGCAATCGTATATTATTAAAAATAGAGTAAAATTTATGCACAGGTACTTATTTGTAATATTTCAATTAATTGAATGGCTTCCAATAAAGTATTTCCTAATTAATAATTTACCCTCAAACCCTAAGGGTTTTAAAAACCCTTAGGGTTTCATTCCAGGTATGTTATTTATTAAGAATT # Right flank : GCTTCCAATTCCCTTTTAAAAGATAGGCATATGTTATATTTAACTTCTTGATAAAAAAATGAAATCTGCAAAAAATTCCAATAGATTTTATCAATTATTTCATACCTCCTGTAAATAGTCAATTTAAGTTTTAATATATTGATTTTAAAAACAATAAACTATCTTTTCGTCAAAAATCGGTACAAAAATCTATTAATATCAATTATTTTCTTTAATTACAATAGATTGAAAAAATAATTAATGGATATATCTTTTATGCTTTGAAATTCTCATAACATTGTCCTGGCAAAAAATACATACCTCCGGCTTGTATATTACAAAACCATTACCCTTACATATTTATATCATTCAACAAAAAGGATATGCAAGAAAGAATTATTCATCCGGCGTTATTATTTCAGGGGAATCAGGATTGATAAAACGTATGATTTCCCGTACTGTTTCAATTATCATTTGTTCAAGACTTGTCTGGGCAGCTTCTTCCCTTTCCCCTGACTTCC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACCCCCTTCACTTCCGGGGCATACTCTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //