Array 1 94701-96559 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHHJ01000004.1 Escherichia coli strain EC_79 NODE_4_length_215903_cov_32.711916, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94701 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 94762 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 94823 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 94884 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 94945 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 95006 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 95067 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 95128 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 95189 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 95250 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 95311 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 95372 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 95433 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 95494 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 95555 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 95616 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 95677 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 95738 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 95799 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 95860 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 95921 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 95982 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 96043 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 96104 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 96165 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 96226 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 96287 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 96348 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 96409 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 96470 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 96531 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 112061-112761 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHHJ01000004.1 Escherichia coli strain EC_79 NODE_4_length_215903_cov_32.711916, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 112061 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 112122 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 112183 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 112244 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 112305 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 112366 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 112427 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 112488 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 112549 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 112611 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 112672 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 112733 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //