Array 1 76688-76539 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEZH010000003.1 Cronobacter sakazakii strain Crono03-YL Scaffold3_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 76687 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 76627 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 76566 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : TCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCGA # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 763001-761934 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEZH010000001.1 Cronobacter sakazakii strain Crono03-YL Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 763000 29 100.0 32 ............................. ATATCATCCCGTCCTGCCTGTCCGTTCACCGT 762939 29 100.0 32 ............................. AAAGACGGATCCGACATGCGCACGCGAAAACA 762878 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 762817 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 762756 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 762695 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 762634 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 762573 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 762512 29 100.0 32 ............................. CCGAGCGCCTTTACATCCTTGCCAGTCGGCTC 762451 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 762390 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 762329 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 762268 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 762207 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 762146 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 762084 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 762023 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 761962 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.2 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : ACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 790441-789436 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEZH010000001.1 Cronobacter sakazakii strain Crono03-YL Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 790440 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 790379 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 790318 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 790257 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 790196 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 790135 29 100.0 32 ............................. CAGGCGCGCGGTTACGCCTGGGCGGAGAAATA 790074 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 790013 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 789952 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 789891 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 789830 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 789769 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 789708 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 789647 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 789586 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 789525 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 789464 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.0 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TCCCCGCGCGAGCGGGGATAAACCGTCAGTTTCCCGGAGGCGAGCGCCCCTTCAAG # Right flank : AACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1529-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEZH010000006.1 Cronobacter sakazakii strain Crono03-YL Scaffold6_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1528 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 1467 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 1406 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 1345 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 1284 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 1223 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 1162 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 1101 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 1040 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 979 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 918 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 857 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 796 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 735 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 674 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 613 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 552 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 491 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 430 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 369 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 308 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 247 29 100.0 32 ............................. CTTACCGCTGGCTGGCAGAGCAGCTCGGCATC 186 29 100.0 32 ............................. GCTCATATTTTTTAAAATTTTTAATATCTAAC 125 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 64 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 100.0 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : GGCCGGAACCGGCGCGGAACTGAGGCAGGCATACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //