Array 1 789-1874 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAF010000088.1 Clostridium botulinum D/C strain IZSVe-TV_10380_18_14 NODE_88_length_2539_cov_21.4472_ID_11588, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 789 30 100.0 36 .............................. TTATTTAGTTCAAGATCATTATTTAGTAGAGGAGGA 855 30 100.0 34 .............................. TTTTAAATAAGTTAATTAGTTCTTTATCAATATC 919 30 100.0 37 .............................. ATTTATAGAATTTGATGGAATTGCTCATTTGAAAACT 986 30 100.0 36 .............................. GGTGCAGTTGGAACTGGAATAGATTCGTTATCATCT 1052 30 100.0 36 .............................. TTACTAACTTCTAATGTAATCTTTTTCTCTGTTTGC 1118 30 100.0 38 .............................. CATATCTAAAATACTGTCTATTTCATTTAGTGCTTCAT 1186 30 100.0 36 .............................. AATTAGTGCAGAACAGTATAAAGAGTTGATGGCTAA 1252 30 100.0 36 .............................. TCTGTAAATTTAAATATTCCTAGAAGTTTTTGCCCT 1318 30 100.0 34 .............................. ATTCCTGTCCTGGATATATCATATTAGGATTTTT 1382 30 100.0 36 .............................. TGTAGCCGTAATAGCGGCTACAGAGATGATGGAATT 1448 30 100.0 35 .............................. TAGCAAAAACACAGTTAATAGATACGTGGAGGAAA 1513 30 100.0 35 .............................. ATTCTACTGGTTGTGGTGTATGTGCTAATATTTCT 1578 30 100.0 38 .............................. TTTGTTTATTATCCATATCTTCTCTTACACCTATAACA 1646 30 100.0 37 .............................. AAGTCTAAAGAAATAAATATAAGTAAAGAAACTTTAA 1713 30 100.0 36 .............................. TCTCCTTTAATGTCAAGTTTATAATATAAAAGAGAG 1779 30 100.0 36 .............................. AAAAGTAGATTACTAATGAAGGAACAACCAATTGTA 1845 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 100.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAGCCATTTAGGCTTAAGGAGAAGATATAATGAGTAAAAAATTCAATTATAATTATGCATTTTTATTTTATGATGTAAAAGAAAAAAGGGTAAATAAAGTATTTAAGGTTTGTAAAAAATATTTAACTCATTATCAAAGATCTGTTTTTAGAGGGGAGATAACACCTTCTAAAATAATAAAATTAAGAGAGGATTTAAAAAAAGTAATAGATGAAAGTGAAGATTTTATATGTATAATTAAGTTATTGAATAATAAAGTATTTGGAGAAGAAGTGCTAGGAGTAGGTATTGAAACTGCGGAGGATTTAATTTTATAAAATTATTTTACCAACCGATTAAAAAATTGAAACTATCCGTAACCCTTGATTTAACTGGTTTTGAGTGCGATTTTGGTTTGAAAAATTAAATTGTAAAAATTGGTTGGGAAAAAACTAACGAAAGTGTTTATTTTCAATGATTTTAAGAGTATAATATAAATAAGGAATGGCTATTTTGCTATG # Right flank : TGAAGCAAAAGATAATATGTTATCTATAAATTTTATATGTTGTAATTCGACAAGTGCCTGGCACCAATTACTCCAAGTGCTTTGTATGGAACCTTCCCGCGTGCTGAAGTGATTGGATATGTTGATTGTGTTTGTCCAGTATATATATCCATTACCGTAGCAATAGCGTCAACTTTGTTGTAAAATTTTGTAATGTTCATAAAATAAATTATATAATTTGATTTTCTTATGAATGTAATAGATCCAGCATTACCCATATCTACTACAGATCCCTTAGCTTTTACTTGGCTTTGTCCACTATTGTTTAACTCTTGAGTCTGTAGTGGTACTTCTATTGTTTCTCCTTCTTTAAGTTCTATTAATGAATCCTATAAATTTTCAATATCAATCAAATCTTTTTTATTATTATAATTTTCCATTTTTATAGCATCACTAGTTGTGATATTGTTATTTACAGTAAATTTATTATCCCAATGAGAATCTGTTTCTGAAGCATAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 2782-168 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAF010000086.1 Clostridium botulinum D/C strain IZSVe-TV_10380_18_14 NODE_86_length_2950_cov_32.2722_ID_11584, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 2781 29 72.4 37 CAACA.CC.A................... CTAAATATTTCTTTATCATCTAGCGTAACCCAAACTT 2715 29 100.0 38 ............................. GTTTCTTTTATTAATTCTCTCAATTTATAATTTTCTGC 2648 29 100.0 39 ............................. CTAATTTTAGAAATAGATTATACTCATTTTACTACACAT 2580 29 100.0 37 ............................. TTTCTTTTAGTTCATCAACTTTCAGACTCTCTAAATT 2514 29 100.0 36 ............................. ATATATACAAGGGTTAGAGATACTATAAAATTGTAT 2449 29 100.0 36 ............................. ACATGACATGGGACAAGTTTTATAACTATGTTGTAG 2384 29 100.0 37 ............................. TTTGTAAAGCTTGGACAGTAACATTCCCAACCATTCA 2318 29 100.0 36 ............................. TTCTTTAATTGACCTAATACATTAGAATTTGTACTT 2253 29 100.0 35 ............................. TTTGTTTACTCTCTATGTATTCTGTACCCTTATCT 2189 29 100.0 36 ............................. AAGTAATTATCTAATTCTGCAAGAGATTTATCACTA 2124 29 100.0 36 ............................. ATTTTATTCACACAATCTTCATATTGTGAAGCTATA 2059 29 100.0 38 ............................. GCAGATGATGGAGATGACATACCATTTTAGGAGATAAG 1992 29 100.0 38 ............................. ATGATAAAATGTTACATCATTTGAAAATTGATAGTTTG 1925 29 100.0 35 ............................. TCTATTGAAATAATAGCTCTTTCTTTAATAACTTC 1861 29 100.0 38 ............................. CTCTTTTAAAAGACACTTCTAAACTTTTAATCGCACCT 1794 29 100.0 38 ............................. TCGTGTCGATGCTGCCGAATTTGTCTCATAAACTCAAA 1727 29 100.0 39 ............................. TTGTATAGCATATATTGAAGCGGATAATCATAATATCTT 1659 29 100.0 37 ............................. AATTTAAAACAGTTAAAAAATACAAACCTATCTTTAT 1593 29 100.0 36 ............................. AAGTATTACTTTAGTCAATATGTAGTTTCAATTTAC 1528 29 100.0 39 ............................. TTAACTATACCTTTATACTTTTTACCACAACTTATATAT 1460 29 100.0 38 ............................. CTTGAATAAATGTTTGTTGGTAATAAAAATCCATTTTC 1393 29 100.0 38 ............................. CAGGAAGTTTCACGTTCAAGTTTAAACCGTTAGCGGGA 1326 29 100.0 37 ............................. TTTATAAATCTCTGTGCTTGTTTCAAAATCACTCTGT 1260 29 100.0 39 ............................. TAATATCCCGAAAAGTCAATACGCCCATTAGCGTTGCAA 1192 29 100.0 39 ............................. ATAGGTATCAGTGGATATGCTTTATTACAAGCAATATCA 1124 29 100.0 37 ............................. ATGCTGAATGCTTTTCCATACGCCACTCCAAAATCAT 1058 29 100.0 38 ............................. TTAATACATATATGTCACCATCTTTCAGTGCCACCTCA 991 29 100.0 36 ............................. AACGCTATCAATATTCCCAATACAAAGAGTATCTCT 926 29 100.0 39 ............................. GGTTTATTATATATTTATCTTTATTAATCATATATTTAG 858 29 100.0 38 ............................. ACAAAAATATGTTTAGATATATTATATTCAGATATTCC 791 29 100.0 38 ............................. CATTAAGTTCACAATCTACTATTTTTGCGAACTTATTT 724 29 100.0 40 ............................. GTCTACTATAAGAAAAAGATTTAAAAAAACGGGATATTTA 655 29 100.0 38 ............................. AGATTCGTTAAAGGAATATTTGATTTTTTAAGTGGTGT 588 29 100.0 36 ............................. GGCAAGGCAGAGGATATAAAACTGCCTACACATAAA 523 29 100.0 37 ............................. TTAAATATATTGTTTGTAATTTGTCTTGAGCTTTAGT 457 29 100.0 36 ............................. AAATCAAAGGATGGAGATAGAATGGTATGGCTTACA 392 29 100.0 37 ............................. ATTTTTGAGGCTATCCCATTTGTTCATTATGCTTCCA 326 29 100.0 37 ............................. TAAAAACTTAGGAGGAGTTGAAAATGAAAATAATAAA 260 29 100.0 35 ............................. GTTGATAATTTGCATAAACTTTTCTACCTCTTCGC 196 28 82.8 0 ................TA.G.-...T... | G [171] ========== ====== ====== ====== ============================= ======================================== ================== 40 29 98.9 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : TATTAAATGCAATATTAACAGTTTCAAAAATTTTAAAATAAATGTTTTCGCTTTGTATATTTAATGTTATAATCATACTTGAGTCATCCTTTGTATACTATGGTTTTTTTAGCGAGAACATTATATCACAAAGTGATGACTTATTTATTTTTTTGTATTTTTAATTAT # Right flank : TAATTAAAAATACAAAAAAATAAATAAGTCATCACTTTGTGATATAATGTTTTCGCTTAAAAAAACCATAATATACAAAGGATGACTCAAGTATGATTATAACATTAAATATACAAAGCGAAAACATTTATTTTAAAATTTTTGAAACTGTTAATATTGCATTTAATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 48-538 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAF010000114.1 Clostridium botulinum D/C strain IZSVe-TV_10380_18_14 NODE_114_length_634_cov_11.7397_ID_11640, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 48 30 100.0 37 .............................. GAATCTACAAAATAGTGTGCCGAAGAATTTCTATTAC 115 30 100.0 36 .............................. CCATAAAAAATCTTATATTCTATTCCCCAAGATTCT 181 30 100.0 36 .............................. AAATTTCTAATATCTTCTTTCGTCTTTTCTTTAGCT 247 30 100.0 36 .............................. TAGATATTACTTATTTTAGAAGGTTCAATTGATATA 313 30 100.0 35 .............................. AGAGCTACAGAAGGATTAATGGGTAAGGTTAAAGG 378 30 100.0 36 .............................. CAAGCTGGAGAAAGAGCTCTTGAAATATTGAAGCCT 444 30 100.0 35 .............................. AGCTTTAGAATTCCATCCTTATCCTCAACATATTG 509 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 100.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : ATGTATTTAAATAGAGCTACAGAAGGATTAATGGGTAAGGTTAAAGGG # Right flank : TCAGTTGAATTACTTCCCATATAAGTGCTATTATGGGAATGCAAGAAAGTGATCATCTAAGGATGTAAGAATTAGATTTATGTATAATACTATAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 1104-478 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAF010000097.1 Clostridium botulinum D/C strain IZSVe-TV_10380_18_14 NODE_97_length_1430_cov_21.7857_ID_11606, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1103 29 100.0 39 ............................. CATAATATTAAACCTTCCATAAGTGCATATATATTTGTA 1035 29 100.0 40 ............................. GTAATTGATTTAGAGTTTCTTCTGAAAGTTTATCTCCTGC 966 29 100.0 35 ............................. AAGGATAATGACAGTTTTCTTGTATTCGATATTAG 902 29 100.0 37 ............................. TTGAAATACTGAAGGAAGGGAAAAGCTATGCTAAACA 836 29 100.0 36 ............................. TCTGAATCTATAGATTGTACACTTTCTTTAAAATCC 771 29 100.0 37 ............................. AAGAAATAATGGAGTTAACTAAAAGTAATATAAATTG 705 29 100.0 37 ............................. GGTATAGAAACTGTTTTAAAGATCAAAAAAGCCCTCA 639 29 100.0 38 ............................. GACTATTGGAATAACTTAGCGGCTCTGTATCAAGCTGA 572 29 100.0 37 ............................. GAAGGTACTGGTGCTTTATATAAAGATACTGCTTTAT 506 29 93.1 0 .........T......C............ | ========== ====== ====== ====== ============================= ======================================== ================== 10 29 99.3 37 GTATTAATAGAACTATGTTAGTTATAAAT # Left flank : ATCAATGTGAATTATTAGCTAGAAGTGTAGCATAAAAAAGTTTGACTTTTCGTGTCCATGATATTGACATAAGACCACATTAACATGAGATGTATTTAAATAATGTAAAAGGATATTGTTTTGCTAGTAATGCTTATGTTGAACATTAACATGAGATGTATTTAAATAACATAAGGTTGTAATCTATTTCCATTTCATAAGGTTGAACATTAACATGAGATGTATTTAAATGAAGCAAAAGATAATATGTTATCTATAAATTTTATATGTTGTAATTCGACAAGTGCCTGGCACCAATTACTCATAGGAGAAATGAAGAAATGTTT # Right flank : TCATAGAAAAACCTCCTTGTAATATTTTTAGTTCTGTTAAGTTATATGAACATTGATTCCTCTCAATCTATTGAAATATAATAGATTTTTCACAAATATATTACCTCCCAGAAAGGAGAGAGAAATCAATGAACAAAGCTAATAAAAAAATGACCTGTCCTCGATGTTATAGCCATAACCTTTTTAGGTTTGGAAAGATCACTTTCTTACATTCCCATAGTAGCACATACATATATTCACGACCTTAATTCAATAATTAATTACTAAACATTTATTATAAGTATTATTGGTATTGTAACTTAAGAGATCATATAACAAAAGTATATATATTAATATATTGGTAAATAAAGGAGTGGTAATATGAGAAAAGTAACGAGTATATTAACATCATTAAGTTTGTTTATTTTTTCCATATTAATTTTAATAGATTTTATGATTATAGGAAGTGATATTCCAGTTAACATTCATCGCAATGAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 1200-1359 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAF010000097.1 Clostridium botulinum D/C strain IZSVe-TV_10380_18_14 NODE_97_length_1430_cov_21.7857_ID_11606, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1200 30 100.0 34 .............................. CTTATGAAATGGAAATAGATTACAACCTTATGTT 1264 30 100.0 36 .............................. ATAAGCATTACTAGCAAAACAATATCCTTTTACATT 1330 30 83.3 0 .........................GGTCT | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 94.4 36 ATTTAAATACATCTCATGTTAATGTTCAAC # Left flank : TAATACCAATTTATATTACTTTTAGTTAACTCCATTATTTCTTATTTATAACTAACATAGTTCTATTAATACGGATTTTAAAGAAAGTGTACAATCTATAGATTCAGAATTTATAACTAACATAGTTCTATTAATACTGTTTAGCATAGCTTTTCCCTTCCTTCAGTATTTCAAATTTATAACTAACATAGTTCTATTAATACCTAATATCGAATACAAGAAAACTGTCATTATCCTTATTTATAACTAACATAGTTCTATTAATACGCAGGAGATAAACTTTCAGAAGAAACTCTAAATCAATTACATTTATAACTAACATAGTTCTATTAATACTACAAATATATATGCACTTATGGAAGGTTTAATATTATGATTTATAACTAACATAGTTCTATTAATACAAAACATTTCTTCATTTCTCCTATGAGTAATTGGTGCCAGGCACTTGTCGAATTACAACATATAAAATTTATAGATAACATATTATCTTTTGCTTC # Right flank : TATGTCAATATCATGGACACGAAAAGTCAAACTTTTTTATGCTACACTTCTAGCTAATAATTCACATTGAT # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 805-442 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAF010000102.1 Clostridium botulinum D/C strain IZSVe-TV_10380_18_14 NODE_102_length_1230_cov_218.937_ID_11616, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 804 29 93.1 37 ......C..A................... GATTTTAGCAAACTAGGTAAAGTAAAAAGTGTTAATT CCA,AC,A [791,797,801] 732 29 100.0 35 ............................. TAACAATTCAGATAACTGTTTTTGAGTTAATCCAT 668 29 96.6 37 ..................A.......... TTTGATTACTTTAATACACTTATACATGGGATTACCC 602 29 100.0 37 ............................. AGCTTTGTACTTACTGTAATATTTGCTCCAAAACCGG 536 29 100.0 37 ............................. ATATAGCAAGTGCGGATTATCAAAAATTGATATATCA 470 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 98.3 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : AGAATATAATTTATTAACAGACGTAAATATGCGTAAAGCAAACAGTATAGAATCTTTTAAAGATGAATCTAGATATAAAAATGCTCTTTTTATGCAATCGCCAATAGGTAAAAATTTATATAAAAATAGGCTAAAAATTGAACAATTATTTTCTATACTTAAAGGACTCTATAATCTAGAAAACCCTAGACTTTACGGACAAAAACGCTATGAACGCCATGTTAAGTGGGTTCTTTTATCATATCTTATAGACGAATTTAATAAGGTTAATAGCAAAATAAATTCTAGAAAATATCCTTGGAATCTATAGTTTTCATCGCGCTAACGCACTTACTTTTTTAAATTTTTAAAGAACTTCCTAATGCACACTTAAAATTATTAAACACATGCTCGCGCATAAATGCTTTTTAAGATTTGTAAAAATT # Right flank : TTAGCTTTGTCACTAGTTCTAAATGTTAATCTTTTTGGTTCTTTCCAATGTTTGTTGAGTAAATATTTAATTTATGATAAAATTACTTATAATTTGATAATACTAAGGAGTTTTTTATGGATGAATTTATAAAATTATTGGATGAAAATCTTGATTACATTAGTCATAAAATTATAGATGATACTTTTTATATACAAGATCAAATAATGATGTTTTAAAGTGGTTAAAGAGTTATCCTAACATTAAAGTAGTTTCTAGAGATGCTTCTATTACATATAAAAATGCTATTTCTAAAGCTCATCCATCTGCGATGCAGATTAGTGATAGATTTCATATGCTTAAAAATTTTACGGAGTATTGTAAATAATATTTAAATAAATATTTTAAATCTCAAGTTATGATAAATAATAGTAATTCTAATAAACAGGAAATGAAAAATATC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 286-2024 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAF010000012.1 Clostridium botulinum D/C strain IZSVe-TV_10380_18_14 NODE_12_length_78680_cov_30.1223_ID_11436, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 286 30 90.0 35 T......C......T............... AGCTTCTAGTATGTATTGAACCACTTATACCTACT A,CT,CA [288,291,298] 356 30 100.0 35 .............................. AAATTTAAAAGAGAGTTTAGAGAATTAAAAAAACA 421 30 100.0 36 .............................. AAAATATAATAAATATGGTAATGTATCAATTTCAGG 487 30 100.0 37 .............................. TCAACTAATTTTCTAATTTCTTCTTTATTTATAGAAC 554 30 100.0 37 .............................. ACTTCGCCTATGATTGTTTCTGTTTTAGTTTGTATTT 621 30 100.0 36 .............................. GTCAGTTAAAAATATTGAAAAAAGAAATGACTTAAT 687 30 100.0 35 .............................. AAAAAGGAAGAACCTCACACAGGTTTAATATATAT 752 30 100.0 36 .............................. AGTAATTAAGTAACAAATATAGGATGTAAAATATAA 818 30 100.0 38 .............................. GTTATCTCCAGAAATATATGGTACTTATCAAGTAACGA 886 30 100.0 34 .............................. TAAATTGCATTAAGCTAACAGGAAGTACAGTACA 950 30 100.0 34 .............................. GAATAGAAGACGTAATTGAATACGTAGATATAGA 1014 30 100.0 36 .............................. CTTTGCAGCAGAAACAGAAAAGAAGAATGAATACTT 1080 30 100.0 36 .............................. AATTACCCAAAATTCACCACTACGTCTACCAAATTT 1146 30 100.0 34 .............................. ATAAATTGGAAAGAAAACCAACGCTAGAAGAAGT 1210 30 100.0 35 .............................. ATAAAAATATTAGAATAAAAATTTTAAAAAAACGT 1275 30 100.0 35 .............................. AATATTAAGCATGCTGATCTCTTACCATCTTTGGT 1340 30 100.0 36 .............................. TGTAAAAGCATTGCAAGATAAAGACATAAGAAACAT 1406 30 100.0 35 .............................. CATAGTCAGTATATTTGTAATGCTATTAGATTTTA 1471 30 100.0 36 .............................. CCACCCCCATTAAATTAATTTAATAGTAGCAAATTA 1537 30 100.0 35 .............................. TCATTTAATATTCAAAGTCAACGTTATGTAGATGG 1602 30 96.7 34 ..............T............... GGATTGAAAGAATAATTCAGTACCTGGATGAAAC 1666 30 100.0 35 .............................. GGACCTACAAACAAATTTAATTCAAGTGTAGAGAA 1731 30 100.0 36 .............................. TACAACTAACCGTATGCTAGTTGAGAATATGCAAGG 1797 30 100.0 36 .............................. AAACCAACAAATATCTGATATAAAAACATCTAATAA 1863 30 100.0 36 .............................. AATGGTATGTCATTATCATCAATAGGTTCTATATCT 1929 30 100.0 36 .............................. GAAAAGGCAAATGTTATTATAGGAAATTCCCATTAA 1995 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 27 30 99.5 36 ATTTAAATACATCTCATGTTAATGTTCAAC # Left flank : CTCTTTAATTTTTGCCATTTCTTTTTTTAGAGCTTTAACTTCTTTTAATGTCATGACTTCATTATCATCTATTTTTACTTCCTTAACATCTTTTATCCAGCCGTTAATTGTTGATTTTGCAATGCCATATTCGCTATTTAGCTCTGTTAAGCTCATCCCTGTTTTGTATAGGTCTACTATCATATCTTTATATTCTTGATCATATCTTTTGCCCTTCCCCATGGTAGACACATCCTTTCTTAACTAAATATTATTTTACTTAGTTCGACTCAATGTGTCCACTACT # Right flank : CCATAGGGAAATAGCCATTCCTTGTTTTTATTATACCCCTAAAGCTATTGAAAATAAACACTTTTATTATATTTTTCCCAACCGATTTTAGTAATGCCATTTTTGAAACTTAAACATATATCAAAACCAGTAAAATTAAGGATTATAGCTGGTTTTAATTTTTAAATCGGTTGGGAAAATAATTTACTTACTTTTGTATAAACAATAACCATAACCAAGAGAATTTTTTTCTAAAATTCCTACTGCCACAGCTATATTTGCCATGAATTGCGATATATCATCATCTTTAATTTCTATTTCAAATTTATTCCCCAATAGTTTGATTTGTTTGTATTTACATCCTATAGGCATTCTATTTTTTAATTTTATAGATTTTATCATATCATGTTCTAAAATTTCATCTATATCCTGAATAACTTTTATCTTCTTTATTAAATTCTCATTGATACTCTTTTTTAATAAATCTATATCCATTTTATTAGTCCAAGGCTCATTATTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 31689-31133 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAF010000031.1 Clostridium botulinum D/C strain IZSVe-TV_10380_18_14 NODE_31_length_31801_cov_46.2452_ID_11474, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 31688 30 100.0 35 .............................. TAGAAAACTTCTTTTTTGATAGGATTATAATACAT 31623 30 100.0 36 .............................. TTTTCACCCTCCTTTACATACCATTTTCCATTTATT 31557 30 100.0 35 .............................. TATGCCCTCCCAAATATTAAAATTTCTCTATTTAT 31492 30 100.0 36 .............................. TATCAAAAACGAACAGCTAGACGAAATTTCATGGAG 31426 30 100.0 35 .............................. GTATTAGGGTTAGAGTTATTATAGTGCTTTTTACT 31361 30 100.0 36 .............................. GAATCGTTAAATTTAACAGTATGTTGTATTATTTCA 31295 30 100.0 37 .............................. CCAAATAGAAAAAGAACATCAACAACAGATTAATACC 31228 30 100.0 36 .............................. AAATCTGCATTATGTGCTACTATAGGTAATTTACCT 31162 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 100.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : CACTTTAAAGATGACGATGAGTAAAAAACTACACCCTTAAATGATCGGAAAATTTCATTATTATCTTGACGTTTATAACCAGCTTTAGAAGTAACAAGTAGACCTATTAAAT # Right flank : AGAAAGTAAGTAAATATTAATAGAAGTTGTTATAACAACTTCTATTATGAGAATAATTGTTATAAAAGACATGAATGATAGATGTTTTTGAAAAATATACTCAAAGTTACTCAAAAAATGACTAATATACTCAAGAATTTAAAACACCCCTATAAGTAAAAACTTATAGGGGTGTTTTAATTATCTGGAGTAATTAAATCTATATTGTGTTCTTGAAAAAACTTAACATATTCTTTAGGTGGAAGCCTATCTGTAATAAAACAAGTGATATCTTCCAAATTACAATAAGTTTTAAGAGAAGCTGTATCTAATTTTGAGTGATCAGCTAAAAGTATTACATTTGAACTATTTTCAACTACTGTTTTTTTTACATCATATTCAAAATTAGATGAATTAGTAACTCCTTTATCAATAGAGAAACCTGTAGTGGCCATAAATGCTTTCGATATATTATAATTTTTTAGGAAGTTTGAAGCTTCTACACCGATTAAAGAATTAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 706-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAF010000108.1 Clostridium botulinum D/C strain IZSVe-TV_10380_18_14 NODE_108_length_808_cov_11.5595_ID_11628, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 705 30 100.0 35 .............................. TAAAAGTTTAGATAAACATTTATAAGATATCGTGT 640 30 100.0 34 .............................. TAAATAACAAAACAGGTGCAATAGAGCTAAAAGC 576 30 100.0 36 .............................. AATGCTGATACTAGAAGCAATTTCGATGATGTTAGT 510 30 100.0 38 .............................. ATATTATAAGTTACACAAGAAGTTTTAAAAGTTCTTAA 442 30 100.0 35 .............................. TCTATTAAAATTAATGCATTTCTTACATCAACTAT 377 30 100.0 36 .............................. TACTCTTTGTAGCCATCTTTAAATTCAATTTCTATC 311 30 100.0 35 .............................. GATATTTTTCTTTTGTCCTCTCCTTCTACTCTAGT 246 30 100.0 35 .............................. TATTGCGAATTTAATTCTTCTAAATTAGTCCCATT 181 30 100.0 36 .............................. CCTGCCTAAAAATAGACAATAAAAAAAGAACTCTTG 115 30 100.0 36 .............................. AGGCAGAAACATGAAAAAGGTAGGTAGCGTTTTAGA 49 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 100.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AATGTGAATTATTAGCTAGAAGTGTAGCATAAAAAAGTTTGACTTTTCGTGTCCATGATATTGACATAAGACCATGTTGATATGACCGCATCTCCCGTTTCT # Right flank : TCCAAATTAAAACAAATGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 1770-430 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAF010000060.1 Clostridium botulinum D/C strain IZSVe-TV_10380_18_14 NODE_60_length_14125_cov_37.7887_ID_11532, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1769 29 100.0 36 ............................. TTTGTTTCTTTTTAGCTTCTGCTTTAGCTTTTCTTT 1704 29 100.0 38 ............................. TAATAAGCCATTTCTCCGTTAGTTTGGACTTGGCTTAT 1637 29 100.0 36 ............................. GATAATTTAAAGTACAATGTATTAGCAATAAGAAAT 1572 29 100.0 36 ............................. TTCACCATACATCTTAATCTTCTCCTTTCATTTCCT 1507 29 100.0 35 ............................. CAAAAGCTAGAGAATGGGGAGCAAAAACGAAATTT 1443 29 100.0 36 ............................. TTGAATTTAAAGCTCCTTGTGATGGTAAAATAACAG 1378 29 100.0 36 ............................. TCTCAAAACTAATTATAAAAATGATTATTATAATGT 1313 29 100.0 37 ............................. ATACATTATTGGATTAATCAAACCAAAAATTCAATCA 1247 29 100.0 38 ............................. TTAAAATTTGTATAGCTTCTTTGCCTGTTACGGCGTTC 1180 29 100.0 34 ............................. TCTGTATTAAGTATGTATTTATTATTAACACCGC 1117 29 100.0 37 ............................. ACTTTAATATTTTCTTAACCATTTTTTCTACTTGCTT 1051 29 100.0 38 ............................. CCTTACAACTTGTATTAAGTGGTAAAAAAATAGTAAGT 984 29 100.0 36 ............................. ACAAAAAACAGACAATATTTAGCTGATAGAAAATTT 919 29 100.0 36 ............................. TAAAGTCATATGACATAACAAAATTTTTATTATCCA 854 29 100.0 38 ............................. AAATTTATTTGCATGTCTATCCTCCACAACTAAAATGG 787 29 100.0 40 ............................. CCAATTCGAAGGTATTTACATAAGAATGATACTGAAATAA 718 29 100.0 36 ............................. AAAATATTAGATTTGAAGATATAGATAGTGTATTAA 653 29 100.0 36 ............................. CTATCTTTTTCATTTTTTAGTGTTAAGCAATCATCT 588 29 100.0 36 ............................. TTCTTTTTTAATTGGATAAAAGGTAGAGAATTATTT 523 29 100.0 36 ............................. ACTTGTGCATATTAGAAAATCCAAGCATGGTTTTTC 458 28 82.8 0 ................TA.G.-...T... | G [433] ========== ====== ====== ====== ============================= ======================================== ================== 21 29 99.2 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : ATTGAAGATGAAAAATATAAACCTTTAAAGGCATGGTGGTAATTGATGTTTGTTATACTAACATATGACATTGAGAAAAAAAGAATAAATAGAGTAAGAAAATTATTGAAAAAATATTTAATATGGACTCAAAATTCAGTATTTGAAGGAGAGATTACAGAAGGGAAATTGCATAAGTGTTTATCTGAGATAAATAAACACATTGACAAAAAAACAGATTCAATATACATTTATAGAGTTAAGATGAGCAAAAATATAACGAAAGACGTAATAGGTATTGAAAAAAGTTTCGATGAACTATTTTTGTAAATACAATTTGCAGTATTGCAAACAAATGTTCTCATTGCCTTAAAGCCTTGACATATCTAGCATAAAGGGTATTATTTAAGAAAAATCCAAAACACTACTTAAGGTTTACTGCAAAATTGCTTAAATTAGAGTTATAGCCGTTTGGTTCAAGGCTAGTAGTATCAATAGGTTCAGGTGTTTTGTATTTTAGG # Right flank : TAACTAATTTTTACAAATCTTAAAAAGCATTTATGCGCGAGCATGTGTTTAATAATTTTAAGTGTGCATTAGGAAGTTCTTTAAAAATTTAAAAAAGTAAGTGCGTTAGCGCGATGAAAACTATAGATTCCAAGGATATTTTCTAGAATTTATTTTGCTATTAACCTTATTAAATTCGTCTATAAGATATGATAAAAGAACCCACTTAACATGGCGTTCATAGCGTTTTTGTCCGTAAAGTCTAGGGTTTTCTAGATTATAGAGTCCTTTAAGTATAGAAAATAATTGTTCAATTTTTAGCCTATTTTTATATAAATTTTTACCTATTGGCGATTGCATAAAAAGAGCATTTTTATATCTAGATTCATCTTTAAAAGATTCTATACTGTTTGCTTTACGCATATTTACGTCTGTTAATAAATTATATTCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //