Array 1 8454-9580 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVBD02000111.1 Pseudomonas aeruginosa strain PABL093 NODE_111_length_22094_cov_33.4177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8454 29 96.6 32 ............................A GCAGGATTTGGAGTCGGAGCGTTTACCTACAT 8515 29 100.0 32 ............................. GTGAACGATGCGAATCGGGCGGGGGTTTGGTC 8576 29 100.0 32 ............................. GCTTGGTAGATGCCTGGAACAAGTCGGTCAGC 8637 29 100.0 32 ............................. CGCGCTGTCCTCGGCCTGGACTGGACCATCGA 8698 29 100.0 32 ............................. TGGGCGAACGACGGCAGCGTCACCCAGGCGCA 8759 29 100.0 32 ............................. ACAGGGACGTTCTCCGCGAGCTGGCCATCGAC 8820 29 100.0 32 ............................. GCAGAGCGGATTGCTGCCCGCTTTGTCGGCAC 8881 29 100.0 32 ............................. GGGGTGGTAGCACCGGACTCGCGGATCTTGAA 8942 29 100.0 32 ............................. GCGTACATGACTGAGGGAGAGTCCACGGACCT 9003 29 100.0 32 ............................. TCATATAGCTTGTATTTTTCCTTGCTATGAGA 9064 29 100.0 32 ............................. AAAAACGACGGCATTCACTACGCGCGCCAGGC 9125 29 100.0 32 ............................. GCGTTCATTTCCCAGGACGTGGACCAGCTGCG 9186 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 9247 29 100.0 32 ............................. TTCATGAACGGCAGAACGTTGAGCGCCGATTT 9308 29 100.0 32 ............................. GTTGTTCTAGAGTCCGTTCAGGAGATGCTTCT 9369 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 9430 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 9491 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 9552 28 79.3 0 A..........A..C..-.....A....T | C [9556] ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACCGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTTGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTAATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18753-20491 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVBD02000111.1 Pseudomonas aeruginosa strain PABL093 NODE_111_length_22094_cov_33.4177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18753 29 100.0 32 ............................. GGATTGCTTCGCCCATCTGCCGGGCCTTGCGA 18814 29 100.0 32 ............................. ACCGGATGCAGTCTTAATCCCTTTTTGCGTCG 18875 29 96.6 33 ............................A GTTATGCTGGTGCTGTCATAGATCATGTCGAAC 18937 29 100.0 32 ............................. CTCTACGACGAGAAGTTTGGCCTGTCGCTACT 18998 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 19059 29 100.0 32 ............................. TTGAGGGCAAACGACGTTTTGCCCATCGAGGG 19120 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 19181 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 19242 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 19303 29 100.0 32 ............................. CGGGCCTTGGCAGCGAGCAGGGCCTTCATGCC 19364 29 100.0 32 ............................. CGCACTGATGCCAGAGCCGGAGTCGCGACCGG 19425 29 100.0 32 ............................. TCGGCCATCACTGGCAAGGTGCGCGAAGGCGT 19486 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 19547 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 19608 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 19669 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 19730 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 19792 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 19853 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 19914 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 19975 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 20036 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 20097 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 20158 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 20219 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 20280 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 20341 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 20402 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 20463 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.1 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGATAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //