Array 1 1354470-1355031 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019840.1 Leptotrichia trevisanii strain JMUB3935 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1354470 37 100.0 38 ..................................... GTTGTACAAAGTTACTATAAAATGAAATTAGATGGATT 1354545 37 100.0 38 ..................................... AATTTCAGAGCAGCTTTATGACTTTTAAATATATTAAG 1354620 37 100.0 37 ..................................... ATTTTTCGATTGCTCCTGTTACATCAAATTTCATTTT 1354694 37 100.0 36 ..................................... TATAGGAAGAGTGTGGGAATTGATGAAGTCTATGAA 1354767 37 100.0 37 ..................................... ATCTAACATCACTAACTAGATCTGAGAAAGGATAATC 1354841 37 100.0 41 ..................................... ATGATGATGGAGGTAACGTAGTAGATGGTGTTAAACCTCAA 1354919 37 100.0 38 ..................................... ATCTTCGTAATTCTTTTTAACATGTTCTAACTTAGTAG 1354994 37 91.9 0 ........................T....T......A | A [1355026] ========== ====== ====== ====== ===================================== ========================================= ================== 8 37 99.0 38 GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC # Left flank : ATAATTGTAAAAAAAGGCGAATTAGCAAAAATAAATAAAGGAATGTCACAAAAAGGCTTTGCTGAAAGATGTACTTATACAGTAAAAAAATTTCCAAAAAGTAATCTTTCAAAAAAGGCTGAAGAAGCCTTGAATAAGATATTTTCATCTATGAAATAAAATTATTGAAAGCAGATTTGAAGAAGGATACTGAATTACAAAATTTGTTTTTTGGTATCTTTTTATTTAGGAGAATAAATTTTGATAATAATTTTTTAAAAAAATTTTGAAAAATCAAAAAAATGTGGTACAATAAGTTCGTGGTAAAAATTCCTACCACTACTAAAAATTAAAAAAGCAGAGAAAAATCCATTCAAAGCCAATAAAAATGCACGTTAGGAGTTACGGAAAATGTCAAAAAAACAGCAAAAAATGATAAAAATTAAGCAAAAAAATGTGATTTTAATGTCTGAAAAAATTTCTGTAATACCGATTAATAAAGGATTTTCTCAAAAGTACGG # Right flank : ATAACAACTTTTGTATAAGGTTGTTTTTTTGTTTGAGAATAAAATTAGGGGGTTGAAAAAAAAGCGAAAATGTGTTATTATAATTGTAGAAAATAATTTTAGGTAGAGAGTGGGTTAGCCCACTCTTTAGTTTTAGATATGAGGTGTAATTTTATGGAACAGATTTTAGATGAGTTTGAGAAGAAAATCGAACAGCATTTAAAGAAGATGAATCTGGAATTGGCAGATTTGGAATATGTGAGGGATGGGGGATATAATTATTTGAGAGTGTATGTGGAGAAACTGGATGGAACTACTACACTTGATGATTGTATTGATTTTAGCCGTGAGATTGACGGGATTGCGGATGACTTGATTGAGGAGAAGTTTTTTCTGGAGGTTTCTACACCTGGGATTGAGCGTAGATTGAGAAAGCCTAAGGATTTTGTGAGATTTTCGGGAGAGAGAATTAACGTCCAGGCTAAGAGCAATATTGAAGGGGCGAAGAAATTTATAGGAAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 2 1687579-1687170 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019840.1 Leptotrichia trevisanii strain JMUB3935 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1687578 37 100.0 38 ..................................... TCTTCAAGTACTATAGGAGAGAAGAAAAAAATATACTT 1687503 37 100.0 38 ..................................... GTAGCTGAGAAGAAAGTGTTCTCTGAAAATAATATAGG 1687428 37 100.0 37 ..................................... AGCTTCTAAATCAGCGTCTTCGTCTTCTACTATTATT 1687354 37 100.0 35 ..................................... CATACGGATCAAATCGCAAAAAAACATTTTAAACT 1687282 37 100.0 39 ..................................... CATCCCTAATGGATGTTTATCAAAATCTATATAGAAAGA 1687206 36 86.5 0 ........................T.....A-.C..T | C [1687177] ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 97.8 38 GTAAAAGTAGTATATCCATTAAAACAAGGATTGAAAC # Left flank : CCTAGGATTTGAAGAAGAATTTGAAGTGAAAAATGTAAATCCGATTGTGCTAAATGGATTAAATGTGGAAACAACACAGCACGATTTCTTCTCGAAAAAATCTACAAATTATGAGAAAGCGTTGGAAGTGGTGCATTTGCATGATGATGACTTTAAGTTTGATGAAGAAGTGAATGCAGATGATTTGATTTAAGTTTGGAAACGTACGAAAATGAGAGCTTTAATTACTGGTTCTCATTTTTTTGAAAAAATATCCAAAAAGATTTTGAAAAAAGAGAAAAATGTGGTAAAATAAGTTTGTAGAAAAAATTCCTGCCATTATAAGAAATGAAAAAAAGGAAAGAAAATCCACTCAAAGCCAATAAAAATGCACGTTAGGAGTTACGGAAAATGCTAAAAAGACGTCAAAAAATGATAAAAATCAGTCAAATAATCTCAATTTTAATGTCTGAAAAAATTGCTGTAACACTTATAAATAAAGGATTTTCGCAAAAGTACGG # Right flank : AATAGTCGTTGTGTAAAAAGCAATGATTATTTTTTTATAAAAAATAAAAAGTTGATAGAAAAATAGTAGAAAATAGAATAGAATTAAGCAAAATTTTTAAAAGTTTTAAAGATATTAGAAATAACATATCACATACATTGGAAGATAAGGCGGAAATTCAGGAAATTATTTCAAAAATTCCAGAAAATTTACAAAAATTGAGAGAAATATTTAAGAGGGAATATACAAATAAAATTCTGAAATCTAAAAACCTGCAATTACAGTCAACATATACTTATTTAGAAAAATTGACTGAAGAAGAGCGATTTGTGGAAATTGGAAGAATAGGATCCAATGGCATATATGATTTTTTATTTAAAGTACTTAATGTACAAAAAATCAGGAGAAAATAAAAATATTTTAATCACAGTTATTTGGCTGTGATTTTTTTTTGAGAAAAAATAGGTTAATAATGAAAAAAATTAAGTTTGAGGAAAAGAGTATAATGATTTTGTAAATGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAAAGTAGTATATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA //