Array 1 3037411-3037806 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080599.1 Nocardiopsis sp. MT53 chromosome MT53, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3037411 29 100.0 32 ............................. TTCGCCGGGCACTGGCCCGACGAGATGAGCGG 3037472 29 100.0 32 ............................. AAGTTGTTGACGTTTTTGATCATGGCAGCCAT 3037533 29 100.0 32 ............................. CGCGCGAGGATGAGCGCGCGGTCTTCCCACGT 3037594 29 96.6 32 ............................T ATGCAGGCGTCGTTGGGGACGACCGCGACCCA 3037655 29 100.0 32 ............................. CCACCGGTAACACCGGTGCCGGCCGCTATGGT 3037716 29 100.0 32 ............................. AGCGACTACATCAGCCCCTCGGAGCTGACCGG 3037777 29 89.7 0 ..............T...........T.G | C [3037802] ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.0 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CGACGGCGGCACGGAGGTGGTCGCCTACCGGCCGCCGGGCTGGACCGGACCGGATCCGCACGAGCGCCTGGCCGCACCCGACCACGCCGGGATGCGGGAGCTGCTGGCCCGCCGCCACACGACCGAAGCGAGGGAGTAGGACATGGACGATCCCGCCTACGATCCGGCCCGGGACCCGATCCCGGACGACCTCACCGACGAGGAGAAGGAAGCGGTCCGCCGCCAGGGCGAGTTCCTCGCCTGGCAGCGCTCCCAGCGTGGTGGTACCGGCCCGGAGGGGGACTGAGCCGCTCTCGGAGCGATAGGGACCGTATCTGCTCGCGACCGAGAGGAGGCCGCCCCGTTGCTCCGGCCCCGGACCTGAAAGCGGATGGGCGAATCAGCTGCTGGCGCTGTGCTTGGCCGCTACAGTGAGCAGCACGTTCCCGGGTGGAATGTCCGTTTCTTGAGAACTCATGAATTCGGCTGGTTGACGTTGTAATCCGAGCAGGTCACCGAGT # Right flank : GGGCTGGCCCCGAAGCGCTCCGGTTCGTGTCCGGGAAACCCCTATCCCGCGTACCAGGGCGGCTCGCGGTCCAGGTGCGCGGGAAGCTCCGTCTCGGCGGGGTCCCAGGTCAGCTTGAGGTCACGGCGAAGCCGGTGCAGCTCATGGTCCGGAAACCGGCGCTGCTGCCAATACCCATCAACGTAAGGAACCGACACCCGCCCCGCGCGCCAGTAGTCGGTCGGTATCCCACCCACCACCACTTGCTTGCTCGGCGGAACCTTCCCGGCCTCGACCAAGGCACGACACGAACCGCAGGCCGAGACGGTACGGTCCGCCCCGCCCTCCGGGTTGAACCGGACCTTGTCCGTGAGCGGCCCGTGCGCGGGATCGAAGAAACAGGGCGCACCCCGGTGCGGCCTGGGCCCGCCCCGGCCGAGTGCTTCAGCGACCGCAAGAAGGTACCGGGCTTCGGCGATGTGACCGCTCGCCCTGGTGATCCCGTCAGCGGTCCGCACGGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3425875-3426574 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080599.1 Nocardiopsis sp. MT53 chromosome MT53, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3425875 29 100.0 32 ............................. GGGTTCTACGAGAACTTCCTCATGTCGGGCAC 3425936 29 100.0 32 ............................. CGGGAGAGGTTCCCCCTTCGGCTGCCGACCTG 3425997 29 100.0 32 ............................. GCGGCCCCGGCAGCACCCCCGCACCTGATCCA 3426058 29 100.0 32 ............................. CGAGCCCGCAGCTCCGTCACGGGGGCCCTGGC 3426119 29 100.0 32 ............................. GCGGCCGTCCGCCGCGCCCGGGAGCGGGCCCC 3426180 29 100.0 32 ............................. GGGTGGCCACCCCCCTGGCCAGTGGCCACCGC 3426241 29 100.0 32 ............................. CTGAGGCGGCCGTGGACCTGGACGGTCACGGC 3426302 29 93.1 32 .TC.......................... ATCGACGCCGCCGTCCCGTCCGTGCTCGCCCA 3426363 29 93.1 32 .TC.......................... ACAGCTGGGCGTACACCATCGCCCCCCGGCTC 3426424 29 89.7 32 .TC......................G... GTGTTGCGCTGGAGGTACTGGTCACGCACCCC 3426485 29 89.7 33 ...........A.........G......C GTCACGCTGTACCAGGTGGCGTTGCCGTCGGCG 3426547 28 86.2 0 T...-.................C..G... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 96.0 32 GCAAGCCCCGCGCACGCGGGGATGGACCG # Left flank : CCACGACCTCACCGAGGGGACACCGCTCGCGGCGGGTGCGGAAGCCGTCTGCCACAACGACATCGCGCCGAAGAACACGGTGTTCCGCGGGGGACGGCCGGTGGCCTTCATGGCGCACCTGTGCCGGCAGTTCCTCGGCCTGGGGCCGACTGCTGAGGCCGGGGCCTCGGCCCGCGCCATCGCGGCGGTTCGCGATGCCTACGGCCTGCCGGACCCGCAGGGTGCCCTGGTGGACCGCGTCCTCTGGTGGCAGACCCTCACCGCCGACGGCATTGAAGAGGGAGCCGCCCGGGGCGACGCCGCCCTCCGCGCGTTCGTGGAGCGCGGAGCCGTCGCCGAGGCCTGTGCCGCCCACCGTTGGGTCACCGCCCACCGGGAGACCTTGGCCGCCCCTTGAGCCCGCGCTCCGTACCTGCCACGCTGACTATCGAACGCGGGACGCCGCCCTCCTGGGAAGGTCTCGGAGAGATAACGCGCCGCGTTGTCCCAGGTCATTAACT # Right flank : GGGACGGCTCTGCCGGACCGGGCAGCGGGGCGTTGGCGCCGCGCCGGCGGGGCCGTTCGGGTGGTCAGGTGGGGGAGGGGAGGTCGGCGAGGCGCTTGTGGAGGAGGGCGCGGTCGTCCTCCGGAAGGCGCACGCCGAGGCGGTCCAGCCACGGGTCGAGGTCTTCCGGCGCCAGCTCCCCGTGCCGGGTGGGGGAGCCCGGGGCGCGGAGGGTGACCGAGTCCTGGGTGAGGCTGGCGTGGATCCCGTCGGGGAGGAAGCCCGTCACCACCAGCATCCTGCGGAACACCGAGTCCGGGTGGGTCGCGACGAAGTGGTTCCCCGCGACCAGGTCCACCGGGTACACCTCCGACTCGTGGGTCACGTGCAGCGGCTCCCACCCCTGCCCCCGCTGCTTGCGCAGCTCCCAGCCCCGCGACCGCCCGCGGGCCACCCGGGCGAGGCCGAAGGTCATCCCGCCCCCGCTGCTCCGGGCCCCGTCCTCCATCGCGATCGGCCGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 3 3575150-3576032 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080599.1 Nocardiopsis sp. MT53 chromosome MT53, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3575150 29 100.0 32 ............................. CGTTGGCCAACAGGCTGCACGAGGCCGGGAAA 3575211 29 100.0 32 ............................. CAGGGGTGGGTGCGCCCGGACGGGCGCCGCAC 3575272 29 100.0 32 ............................. ACCGCCCTGGCCCTGGCCGCGGGTGCGATCGC 3575333 29 100.0 32 ............................. GGCGGTTCCCAGCGCAGTGGGCGGCATCCCCG 3575394 29 100.0 32 ............................. GTCTGGTCACTCATGGGTTTCGGTCTCCAGGG 3575455 29 100.0 32 ............................. TATCTGGAGGAGCCCGCGCAGCGGGAGTCCTC 3575516 29 100.0 32 ............................. GGCTCCGCCTCCTCGGGCCGGCCGCCCCAGAG 3575577 29 100.0 32 ............................. CGGGTCTCGACTGGGACCAGGGGTCGGTGGAC 3575638 29 100.0 32 ............................. CCCGGGCTTCCGTCATGTCTGGGGTTAGATGG 3575699 29 100.0 32 ............................. GCGGGGCCCAGCTCGTTGCCGCCGAGCTGGCC 3575760 29 100.0 32 ............................. GCGGACCGCGATGGCGCTCGCGCAGTGGAGCA 3575821 29 100.0 32 ............................. CCCGCGATCTTCTCCGCCTGCTCGTACAGGGC 3575882 29 100.0 32 ............................. ACGGCCAGGCGGACGGCCTCGTGCCCGGGGAA 3575943 29 100.0 32 ............................. GAGCGCTCGGATCTTCAAGGGCGGGTGCTGCG 3576004 29 96.6 0 .....................G....... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : AGCGCGCCGTGATCCCGCGGCCCTGCGGGGAGACCTCGCTGAACAGCGGCGGGTTCCGGCGCACCTGCGTCCTCGACTCCGACCACACGGGAGACCACGAGGACCTCGACGGCCGGACCTGGCAGCCTCCGGGGACCGTTCTTGCCCGCCTGCGCGCCGCCTGGGGCGACACCCACCGCATCGCCTGGACCGGTTCGCTCTGGGTCGCGGTCCACCGCGACCCCGCCGCCTCCTGGCGCACACACGTCGAACCCACACCGGCCCAACTCGAAGACCGCCTCCGCCGACACACGGCCTCACGTGCCGAGTCTCGGCCGCGCCGGTAGCTCGTCTCTGAGGCAGGGGTCGTGCCGTGTCTGCGGCCCCTGTCTCCGTTCGTCCGCGTGCGCCGCCCTGCTTGAGTACTCAAGCCGCCACATGCCACAGTGGACGAGGCCGCAGGCCCCTCTGAGGCTAGGTAACGCGGGGATAACGTCCCGCGTTTTCCCAGGTCGCGAACT # Right flank : GAGCGAGTCCCGGCCGCGCCGGTGACCCGCACATCCGGGGTGGAGGCCGCACCGGCGTCCTCCACCCCGCACCCCTCAAACCCCATCCGCCTCCACGACGGTCACCTGCCACAGATGCCCGTCCAGGTCGGCGCAGACACCGGCATAACCCCACGGCTGCTGCTCGGGCGCCGCCACGATCTTGCCTCCGGCCTGCCGGGCCCGTTCGATCACCTCGTCGACCGCCTTCGGCGTGCCGACCGCGAAACTCAGCAGCACCTCGTGCGATCGGGGCGGTGCGACCTCCCGGCCTTCGCCCAGGACCCACCCGAACCCTCCCGTCGGAATGAGCATCAGCCGCGTTCGCTCGCCGATCTCGAACTGCAACGGCTCGGGCACCCCGTCCTCGGCCGGTTCGCCCAGCGCCGCGAGACCGAACACCTCCCGGTAGAACACCATCGCCCGCATCCGGTCCGCGATCGGCAGACTCACCACGATCGCGCCGCCATCACTTGCGGCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 4 5399782-5400542 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080599.1 Nocardiopsis sp. MT53 chromosome MT53, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 5399782 30 96.7 31 .............................C CGCCACTGGGACGCCGACCACGACCAGGACG 5399843 30 100.0 31 .............................. GGGTTTCGGCGTGATGGTATAAAAAAGCCCA 5399904 30 96.7 31 .............................C GGACCAGGTGGAACAGGTGACCGGCGACCCG 5399965 30 96.7 31 .............................C CGGCCGGGATCATGGCGGGGGCCGCGATCCA 5400026 30 100.0 31 .............................. CGGCGCGGATGTGCATGACCGACGCGGTGGC 5400087 30 100.0 31 .............................. CGGCGCGGATGTGCATGACCGACGCGGTGGC 5400148 30 100.0 31 .............................. ACTCAAAGAGCAACAACAAGCCATTCCTATT 5400209 30 96.7 31 .............................A CGGGCAGAGCCAGCAGCCCGACCCCGACCGA 5400270 30 100.0 31 .............................. CCGACACGCACTTCGGGAGGACCCGTTGACC 5400331 30 96.7 31 .............................A CGAGGACGACCCCGACAACCCGCTGCTGGCG 5400392 30 96.7 31 .............................T GGAGACAACGGCCTTGGACGCCCCGACCACA 5400453 30 96.7 31 ........................C..... GCGAGTCGGCCGACGACGCTACCCCGGAGCA 5400514 29 83.3 0 ..........T...T..........-..TT | ========== ====== ====== ====== ============================== =============================== ================== 13 30 96.9 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : GTGGTTCTTCCTGGCCTACGACCTGACCGGCAACCCCTGGGCCACTGCGGCCTGAACGGACTTCGCGTCCTGAACGCGAAACGGGCCCAGGAGAGCGCGGCAACGCTCCCCGGGGCCCTCAATCCCGAAATCCACAGTTCCACGTGTAAGAAAGCAGGATCGGTGACGCATCCTATCCCGCGCCCCCGCCCGCCGACCGGACCGCCCAGGCCCCTGCCCAGGCGCCCCCGTCCTCCGAAGGAGTGGGCTGCCTGACCGGAGCCGCGCCCCGCCCGCGCCTATGCGGGCGGGGCGTTCTGTGTTTCCCGGAACCCGACAAGGGCTTCTCCGTCGTGGCGTTCGTGGTGGGGCCGCGATGGTTGTGGGGTGCCCGTTGCCCTGGCGCGCTCAGTCCGGTAGAAAGCCTTGGAGCTTAAGAACGAAGCTTGGGCGTTTTGTCTGTTTCTTGAAAAGTCATAAAATCGGTCGGTTCCCGGTGGCATATGCCCAGGTCATTTACT # Right flank : TTGGTCCTGTCAGCCTGTCAGCCACAGGGAGACCGCCCCGATCACACCGGCGGCACCGGCGACCCCAGCAGCACCGTCACCGGTGCCGCGATCACCGACACCACCCTGATCCCCACCTCCACCGGCGACTTCCCCGTGTGGAACGCCACCGGGCTGCGGAACATCCACCACCGTTTCCCGTTCACCACGAACGGCCACGCCAGCGGAACCCCCGACCTCGTGAGCCAGTCTCCGAGGACGTGCACCAGAGCCCCCGCGAACACCACCGAACCGATCAACCACCACGCCGGTGTCTGCTCGTACCCCAGCATCGCCGCCACCGCCAGTCCTCCGGCGATCCACAGCGTCGCGTGCTTGCGCTTCCTCAGTGAGCCCAGCTTCTTCATCGGCCGCAGCACCGTCCCCAGTCCGAGGGCGACCATCGCGAACACCACCAGGCCCGCACCCAACGGCACCAGCGACACCAGCAGAGCGACCAGCCCGAACACCGCACACGCCGG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 5402691-5403634 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080599.1 Nocardiopsis sp. MT53 chromosome MT53, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5402691 29 100.0 32 ............................. CCCGCCACCCGGCAGGAGGCCGACCGCCTCCA 5402752 29 100.0 32 ............................. CCTGAAGACGGGTTGAGGTTGGGTTGCATGGC 5402813 29 100.0 32 ............................. GCCTCGGCACTCAACACCCGGTAGACGGTGCC 5402874 29 100.0 32 ............................. CACCAGACCGGAGAGACGACACCGTGACCGAG 5402935 29 100.0 32 ............................. TTCCTGGTCGACCGGGCGGGCACCGTCTACGA 5402996 29 100.0 32 ............................. TACTCCAAATTACCGGCGAGTAGGACTCCAAA 5403057 29 100.0 32 ............................. GTCCACCAGGCGCGGACCGCCGCCTACAACGC 5403118 29 100.0 32 ............................. TGCAACGTCCCCGGTGTCGACCCGGTCTGGAG 5403179 29 100.0 32 ............................. ACGGCGATCCAGGAAGCCGTGGACGCCTACGG 5403240 29 100.0 32 ............................. CGTGCCGCGCAGCTCAACGAAGCGGTCTTGGA 5403301 29 100.0 32 ............................. CTCAGGGTGAGCACGAGCGGTTCGTCGGGGGT 5403362 29 100.0 32 ............................. CCGAACCCGGCCACCGGAACCCCACCGGCGGG 5403423 29 100.0 32 ............................. GGGTCGGGAACGACCCGAGACCGGAGCAGGTG 5403484 29 100.0 32 ............................. CATGCAGTTCGACGACCACCCCCTGATGCAGG 5403545 29 96.6 32 ..........T.................. CTTATCTGCGCACTTGTGTGTCACTCATGTAT 5403606 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CCCGACGAAGACGTGGTCGTGGACGAGCACCGGCTGGTCACCGGCGACCGCGGACGCGCGCAACACCGCGTTCTCGCAGATTACGGCGGCCTCCCCGACCTCGATCCGGGACCCCTCGGAGTCGAGCACCGCGCCGTACATCACCCGGGCTCTGGGGCCCACACGGACGTCACCCACGAGCGTGGCCGTGGGGGCCACGTAGGCGGTGGGATGGACCTGCGGCTCTTGGCCGCGATGCCGGATGCGGATCCCCTGTGCTCCAACGGTCATGAGCGGATTGTCGACCAAGGGGGCGCAGGAGCGCTGGCGGATTTCAGACGCCGCGTTCGCCGGTATCCGTGCCGCCCGCCGCCTGCCGATCCACGGCTCCCATTGCCCGGACCCGATCCATCCGGTAGAAACCCCTGAGAGCCCACCGAGCAAGGCCGGGCGTTTTGTCCGTTTCTTGAAAAGTCATAAAATCGGCCTGTTCCCAGGGGTATCCGCGCAGGTCATTTACT # Right flank : CGCGACGACCTTCACCTGGTCGCTGCGCATCATCTGCTCCCCACGCATGCGGGGGGCTTGTGGGCTGGGCCCGGATGTGGGTGAGGGGCCTGCCTGGCGTGAGGGCAGGGCCTTGCGGATGGCCCCGTACGGCCACGGGGGTGTACGAGCGCCCCCGACATGTGGCATGCTCGGATTTGGGCACTCGTCCAAGGCGATCGCCCAAAAACTGGTTCAGGAGGACGCATGACCACACAGCGAGCGCAGGAGGTGCGGGAGCGCCTGCTGGCCGCCGCGGCGGAGCTCATCGCGGAGCGGGGCTGGGCGGGGGTGAGCACCCGGGTCCTGGCCGAGCGGGCCGGGGTGGGGCCCGGGCTGGTCCACTACCACTTCTCCTCCCTGCGCGCCCTGCTCAACGAGGCCGCCCTGCGCACCATGTCCGGCGTCGTCCTCGAAGGCGCCGCCCACCTCCCCGGCACCACCGCCCGAGAGGGCCTCGACCTGATGCTCGGCAAGCTGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 6090068-6089365 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080599.1 Nocardiopsis sp. MT53 chromosome MT53, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 6090067 29 100.0 32 ............................. TGGTTGGCCACGGCCAGGCTCTTGCGCGGGTA 6090006 29 100.0 32 ............................. CTTGACCGGTGCCAGCGCGGCCCTGCTGCCCG 6089945 29 100.0 32 ............................. AACGTGCTCGCGTTCTTCTTCCTGGACCCCCG 6089884 29 100.0 32 ............................. GACAACGGCAGGCCCCGCTTCAGGACTCGGCC 6089823 29 100.0 32 ............................. TGCCGTCACTCCATGAGCGCGTACATCCCGGG 6089762 29 100.0 32 ............................. GCGAATCGCGAACTGCATCACGGTGATGCCCT 6089701 29 100.0 32 ............................. GCCCGCGCGGACATCGGCATCCTCGTCGTCAA 6089640 29 100.0 32 ............................. GACCCCGCGGCCGCAGCACTGCACCGCGCGGT 6089579 29 100.0 32 ............................. GGACAACTCACACCCATGCCCGGCGTCGTCGT 6089518 29 100.0 32 ............................. TCCTCCGCCAGGGCCTTCTGCGCTGGCAGTCG 6089457 29 100.0 35 ............................. CACATCGAAGGCACCTGGGAGCTGAACGACGAAGC 6089393 29 79.3 0 ...T.................GC..GG.T | ========== ====== ====== ====== ============================= =================================== ================== 12 29 98.3 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : ACTGGCGCGTGGTGGACGCCGCCCTCGACCGGCTGACCTGTGCTGACTGTGGTGAGCGGACCGGCCGGGGGCCGCTCGGCTGCGCCCCCTGCGATCTCGCGCACGGTTTCCGCTACGTGGCGATCGAGCGCGACCGCCCGGGGGTTCCGCCGGGGAACGAGCACGCGGTCCGGGTGAACGTGTCGGTGGTGCGGCGGCCGCACGTGACCTCGGCGAACGAGCTACTGCTGCGCCGTTTGACGCTGCCTGGGCTTCTCGTCGGACTGCTGCCGACCACCGAGGAGGCGCAGCGCCTCGCTGCCACGGCCAGACAGGTGGTGGTCGGGCCGGAGCGCGAGCGCACGGTAGAGCTCATGGTGGAGGAGATGTTCAGCAGCCGCCGAGTTGAGGGGTAATTTCGCATTTGATGCGTAGAAAGTGGCCCTGTGGGTTCTGTGTCTGATTCTTGAGAACTTGTAAAATCGCCTTATCTTCGGTGGAATCGTCGCAGGTCATTTACT # Right flank : GTGGGGTGGGGGCTGTGGGGTGTCGGCGGTGGGACGGTTTGTCGCGTGCGCGGGAAGCGGGTCAGGGCTGGAGGACGTAGCGGCCGCGGATGCCGCCCTTGGCGAAGGACCGGTGGGCGTCGGCGGCGTCGGCCAGCGGGACGACCGCGTGCACGCGGGTGGGCAGCTCGCCCGCGGCGGTGCGCGCGAGCAGGTCCGCCAGGCGGGCGCCGTCCGGCACTACATTCACGGCGCGCAGGTCGATCCCGCGGTCGGGGGCGATCGGCGAGACCGGCTGCACGCCCACGAAGACCCCTCCGTCGCGCACCAGGTCGCGCCCGCGCTCCTGGAGCGCCGCGGTGTCGGCGACGGCGTCCCAGCCCTCGATTTCGCGGTCGGTGAAGTCCGCCCCCAGGCCGCGGACGAACTCCTCGTCCGCCGGCCGGGCGAGCCCCGTCACCCGCCAGCCGCGCTCCTGCGCGAGCGTCACCACGTACCCGCCGACGGCGCCCGCGGCGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 6120538-6120083 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080599.1 Nocardiopsis sp. MT53 chromosome MT53, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6120537 29 100.0 31 ............................. GCCAACGTGGCGTTCGCGGTCGGTGACATCG 6120477 29 100.0 32 ............................. TAGGTCACGCTCGCGGTCTCGGCCTCGGTGAC 6120416 29 100.0 32 ............................. CCGTTCATGTCGATCGAGTGCGGGTCGGGCTT 6120355 29 100.0 32 ............................. AACCGCAGCGGCCCGGTCGGTATCGAGACCGT 6120294 29 100.0 32 ............................. ACCAGCAGGTCTACTCCGTGCTGCACATCGCG 6120233 29 96.6 32 ...............A............. CGCACCGAGTACGAGAACATCACCGAGGCCGT 6120172 29 96.6 32 .......................T..... GCGTATGCCTCGTCCACCGGCGGGGACGGCAC 6120111 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.2 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : CCTGATCCGCGACATCGGCATTCCCGGAACAGCGGTGCGCACCTTCGCGCTGTGTCAGTTCGTGCTCTAGGTCCTAATCCGATCATCGCCTGGACGCTGGGTTTCCATGACAAGACCATTGCCCGAGTCGCTGCCCAGGAGGGAGAGACCAGGAGCCGCTGCGCCCCCAGCGACCACAAACGGTGATCGAAGCGGTGAGGCCAGGGAGAATGTCGATCGCTCGATCAACGGCTCTTGCAAGTGCCGCCCCCAAGCGGGGGTGGTGGGGGAGAGCGAAGGGTCGACCACGTTCTGGCAGGTGCGGTGGATGCGCAGGCTCAGGGACACGATGTCGCTCAGGCCGCCGTCAGCGTCCGCTCGCCCTTGGGGAATCTCAGAAGCCCCGCTCACCTTGAGCCAGGCTCGGTTTCCATGCCACAGTGTCTGAAGTCTTCGGTCGTAGCCTGTCGGCACTCGTATAACGCGGAGATAACGCCCCGCGTTGTCCCAGGTCATTAACT # Right flank : CCAAGGTGGTTGTCACGGCGATCGCCAACATCCTCACTCCGCTCGTTGCGGGGTTCCTGCCGGATGTGCATGGGTCCCCCATCGACGCGGTCGTCATCAGCGTCGTCAGTCTGATAGTGACGTTCCCTGCCGGGTATCTCGCCCCGCACGCGTCCCGCCCCGACGTGGAAGTCAAGCACTGACCGCACACATACGCCTCTCCCTTCGCGGGAGGGGTGCTTTCATTTTCGTTATGCCCGCTTGCCCTTGGCGATCTGGTCGACCCGGGCGGGAGAGAGGCCGAGTTCGGCGGCGAGAGCGCGGACTGTGTGCCCCTGTTCTCGCAGCTCGGCGACGGCGGGCTGACGGACCGCTTTGAGGGCGTCCTCTACCTCGGCGAGGGCGGCAAGGATCTCGCCGACAATGCGGGCGCGGATGAGCGGGTCTGTCTCTTCAGCAGCGGACTTGGGGAGCTTGCGCAGGTGAGTGAGGGTTTCGGGGATGTCCATGCTGTCAGTGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 8 6349624-6348356 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080599.1 Nocardiopsis sp. MT53 chromosome MT53, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 6349623 30 100.0 35 .............................. CTGCCCGCCGGTCGGCGGCGGCGAAGGCCAGCAGG 6349558 30 100.0 35 .............................. GGCGATCACCTCCCGGTCCAGGTGCAGGTCCACCA 6349493 30 100.0 35 .............................. GGTCGGGGTGGCGGTCCCTGGAGAGGACGCCCGGG 6349428 30 100.0 33 .............................. GTGTGCATCAGCAGGTTCTTGCGGGTCATGCCC 6349365 30 100.0 36 .............................. AGGGAAGGCGATCGCCTACGGCGAACTCGCCATCCT 6349299 30 100.0 37 .............................. GCATCGGCCAGCGTGATACCGCACAGGTCTGCGACCA 6349232 30 100.0 36 .............................. TTGAGAGGGCGGGGCCATACGGTCCCGCCCTTTGTG 6349166 30 100.0 34 .............................. TAGAACGCGCGGGTCATCTGCCGGATGGCGGCGA 6349102 30 100.0 36 .............................. TTGATGTTCGCGGAGGAGTGGCTGGAGTACACGGGC 6349036 30 100.0 35 .............................. AGCAGCATCTGCACCGCCCGGCCGACGATCTCCCC 6348971 30 100.0 35 .............................. AGGGTTTCCGTGTCCGTGAATCCGCTGGTCGTCGC 6348906 30 100.0 36 .............................. GGGGCGGCCTGAGCGGCGCCGCCCCCTCCCCCACGG 6348840 30 100.0 35 .............................. CAGCGCACCCACACCAGGACGACCTCCGCACCAAG 6348775 30 100.0 35 .............................. GCGGTGAGCTGCCCGCAGAGGGCGACGGCGTCCTC 6348710 30 100.0 35 .............................. ATCAGGTACCGGGCGCGGGCTCGGCGGTGCTCGGA 6348645 30 100.0 36 .............................. CGCTCGCGGCGGGCGACGAGCCCCCACCCGGCCCGG 6348579 30 100.0 34 .............................. TCCACACCTGGCCGTAGCGGGGCGGGCTCGGGGG 6348515 30 96.7 35 .........................A.... GTGGCCAGGACTCCGGGCCCGGCCGCGCCCAGCTC 6348450 30 96.7 34 .........................A.... GCGGCGGAAAATCGCTGCTGGCGGGCGCGGTAGG 6348386 30 93.3 0 ........T................A.... | G [6348363] ========== ====== ====== ====== ============================== ===================================== ================== 20 30 99.3 35 GTCCTCATCGCCCCTGCGAGGGGTAGCAAC # Left flank : CGGTTGCCTACGACGAACTGCTGTACCTGGAAGCCCTCAAAGTGACCCGGGCCTGCCTGGAAGGCGACACCTACAAGCCGTTCCGGATCTGGTGGTGAACCGGCCGTGCACGTTGTGGTCGTCTACGACACCGCCGCCGAACGCAACCCGCAGATCCTGCGGACCTGCCGGCTGTACCTGCACCACGTGCAGCGCAGCGTCTTCGAAGGGCAGTTGAGCCCGGCACAGCTCAAACGCTTCGAGCGAGCGGTCAAGGACGTCATCGACGACGGGTACGATCACGTCCTCGTCTACACGTTCCCGCCGGGCGCCGTCCCGCAGCGGCTGGCATGGGGGATCACCAAACCCGAGCCGAGCGACATCCTGTGAGGGAACGGTGATCGTGCTCCGGGGCCGGTTTTCAGCGGCACACCGGGCTCTGCTGCACTACCGGAGGTTCACTGAAAAATGTGGTCCCAGGGCCCTCGGCGTAAGCCTGGGACCTGCGGCTTTACCGTCGG # Right flank : ACAACGGCACCAGCCTGCAGCGCGGGCACCCACTGCTAGGGGCCATTCCAGTTAGAACAGGGCCTCCTGGACTTGGTGCTTGGGGGGCATCCCCTCCCCAGCGGCGGAGCATAGCTCTGTCCAAGACGTGATCCCACCCTGCGTGGCCAGTGCGTGCAGGACAAGGGCTGCGGCCACGGCGTCCCACAGCGCTCGGTGCGGTCTGCCGGCGGGGACCAGCTTGTTGACGCGGTCGTGTAGCTCGAAGTGGTCCAGCAGAACACCGAGGTTTTTCGGGCCTGGCACGTCCAGGGTCCGTGCCAGACGCAGGGTGTTGATCAGCCCGGCCGGGGTCACCCGCGGGTGCCGCAGGCGGAGGAGCCTGTTATCGACACCCACGTTGTGTCCCACCAGGTAGTGGCCCTCCACCCGGGACACGAGGGCGTCGTCGATCTGCTCGGGGCGAGGCGCGCCTCGGAGGGTGTCATCGTCCAGGCCGGGGCTGATCCAGGGACGGCGTG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGGTAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 9 6360713-6358658 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080599.1 Nocardiopsis sp. MT53 chromosome MT53, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 6360712 30 100.0 35 .............................. CTCGGAGGGGAGCGGGGGGACTGAGAGTCCCCGGG 6360647 30 100.0 34 .............................. AAGGGGAACCCTCCGAGTGCGTCTCCCCATGCGA 6360583 30 100.0 35 .............................. ACGCCCTGTTGGAGGACTGGGGCACCGGCCACGAG 6360518 30 100.0 35 .............................. GTGATGCCGAGCACGAGCAGCGTCTCGGGGGTGAG 6360453 30 100.0 36 .............................. GGCCCGTCCAGACCACCGCCGAGCGCGACGAGAAGT 6360387 30 100.0 35 .............................. ACGCCCGGGTCGCCAAGGCCGTCGCTGACGCCTAC 6360322 30 100.0 34 .............................. ATAGAGGCCACCAAGTGCCCGTCGTCGGCAAGGA 6360258 30 100.0 34 .............................. GCGTCAGTCAGCGGGCTCACCGGGCCCCCTCCGC 6360194 30 100.0 36 .............................. GCGGTGCGGCCGCGGCCGCCGTGTCCAACGTCCACC 6360128 30 100.0 35 .............................. ATGTCCAGGTAGGCCGCCAAAGTCGCAACCTTGGC 6360063 30 100.0 36 .............................. GTCGGTCACCACTCCTGGGCGGAGATCCGCACCCGG 6359997 30 100.0 36 .............................. GTCAGCGGGGTATCCACGGGCTGATCCTCTCAGGCG 6359931 30 100.0 36 .............................. GTGTGGTCCTTGACGACACGACGACTCCGTACCGGC 6359865 30 100.0 36 .............................. CCAGACGGGCGGGGATCACGCTGGAGAGCGTGTACC 6359799 30 100.0 36 .............................. CGGCCGGTGCCGGCCGACCGGTCGCCGCTCGTTCCT 6359733 30 100.0 36 .............................. AGGACCACGGCGGCCTGTACACCGCCCACCTGCCCC 6359667 30 100.0 35 .............................. GGGCGCCCGTGTGGGAGCAGATCACCGCCGCGGTA 6359602 30 100.0 35 .............................. TGGGCGAACGCCGCCGACTGGGAGGAAGTCGCGGC 6359537 30 100.0 34 .............................. GACGACGCACACGACGGTGTAGCACCCACCCGGA 6359473 30 100.0 36 .............................. GGCGGCAGCGGGGTGGGGTCCTGCCCCAGCAGCATC 6359407 30 100.0 36 .............................. GCGGCCTCGCGGGCCCGGCGGCGGGCGGAGTGCCAG GT [6359396] 6359339 30 100.0 37 .............................. AGGAAGCTGGCGAAGGCGGCGCGGGCGTTCCCGACGA 6359272 30 96.7 36 ....................C......... TCGGGACGGGAGGTGTGCTCACTCATGCGTTCGAGC 6359206 30 100.0 35 .............................. GCGGTGCGGGTCTCCCACTCCTCCACGGTGAGCGG 6359141 30 96.7 35 ...............A.............. TCGGCCTCGTGGCTGGTCACCTCGTGCCGGCGGGG 6359076 30 100.0 34 .............................. GCGTCCAGCAGGATCGCGGCCCCGGTTCCCAGGG 6359012 30 100.0 35 .............................. CTGCCTGGGCGGTGCGGGCGGCATCTTCGGCGCGG 6358947 30 96.7 35 ........C..................... TGGTGGGGCATGGGGTTCTCCCTGAGGTGTTGAGC 6358882 30 90.0 36 ...T....CA.................... AGCGGTTCACCGAGTGGGCGGCCGGCGGAATCGAGT 6358816 30 96.7 34 ........C..................... CTGCGGACGCCCATCAGGGTGCGGTGCGCCTCCC 6358752 30 90.0 36 ...T....C........T............ ACCCCGACGAGGAGGTGCAGTGGTGACCGCCCCGAC 6358686 29 90.0 0 ........C..............-....G. | ========== ====== ====== ====== ============================== ===================================== ================== 32 30 98.6 35 GTCCTCATTGCCCCTGCGAGGGGTAGCAAC # Left flank : GGTCCACTTGGAGATGACCCAGGATCGGGAGGACGCGGACCACGAAGCACTGCCCGAGCACCGAGACGACTACACCTGGGATTTCTGCCTCGACATCTTATTCGAGGACCACGACGTGATGCTGCTGTTCGATCCCAGGTTCGACGGTGTTGAAGATCCCGGCTCTGAGCTGAACCGGCTCCAGGCGATGGGGGACATGCGTCCGCAGAGCTGGTTCGAGAACTTTGGAAGCCAGGATCCGCGTGACCCCGACCGCGGGTTCCGCCGCTGATCGAGTACAGGCGCTGAGCCCGGAGGGCCAGGACGGGGAGCGGTCTCTGACCGTGGCCACGGGGCGGGGGACGGTCTGTCGGGGCGGTGAGGTTGGATAGTGGACGTGGTTGAGTCCAAGGGTGTTTTTCAGCGCCACGCCGGGGTCATCTGCGCTACCGGCGGATCGCTGAAAAATCTGCTTCGAATCGATGAACCAGGCCTGTTGCGGCCAGGGACTTTACCGTCGG # Right flank : ACCCCGACCATCCACCGGAGAGTAACGAGGTCCTCGCGGTCGTCATCGCCTGTGCGAAGCGTGAGAGTAAGATTTGTGTGCCATATGCGCTAACCACAGGCCCCTTGGAGGGGTAAAAAGATGTGATTCTTCGGCGCATGTCGCATTTTTTAATCATCCCTTCGAGGGGTGCGGGGTGGGCGTATGCGCCCACCCCTTCCTTTTTCTGGCGTGCTATTCTCCTCGTGTTCGGACGAAATCTTGAAGACAGTCAACCAAGAACTACATCGACTGCACTTCGAGTGTGCGGGGTTCGAACGCTTGTTGGCTTATCGATGCGAATGGGGCGAACGATGGAGCTCTATGTTCGGAGCATGAGGATCACCTGGGGATGGTGGTCGAGGTGGTCTGGCCGTCCGAATTCGGTGGAATTGGAAGGAGTTGCGATCCGCTATTGGTGTGGTCGCAGGGGCATAGGAGGAATTAAGTAGAGTTCTGGGCTCGCATGCATTGGGTTGCAT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATTGCCCCTGCGAGGGGTAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 10 6721652-6722105 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080599.1 Nocardiopsis sp. MT53 chromosome MT53, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6721652 29 100.0 32 ............................. CCGAAGGCCTCCCGCGAGGAGCTGCTGGCCGA 6721713 29 100.0 32 ............................. TCCTCTAACCCGTTTCACCTGCACAGACAGGA 6721774 29 100.0 30 ............................. GACAAGCTTCAATGGCGGTCCGACTTCGGC 6721833 29 100.0 32 ............................. TCCGCCACGGTGGCGGGGGCGGTGGGGTACGC 6721894 29 100.0 32 ............................. ATAAGACAACCGCTGAGCGGGGGTGCTAGACG 6721955 29 100.0 32 ............................. AAAGCACCCCCCGACTCCGAAGAGTCGGGGGG 6722016 29 100.0 32 ............................. AGCCACCGGCGTTCGATGATCTTCGGGACCGC 6722077 29 89.7 0 ..............T............GA | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CGGCGGCGGCACCGAGGTCGTCGCCTACCGGCCGCCGGGCTGGACCGGCCCGGACCCGCACGAGCGCCTGGCCGCCCCCGACCACGCCGGGATGCGGGAGCTGCTGGCCCGCCGCCACACCACCGAAGCGAGGGAGTAGGACATGGACGATCCCGCCTACGATCCGGCCCGGGACCCGATCCCGGACGACCTCACCGACGAGGAGAAGGAAGCGGTCCGCCGCCAGGGCGAGTTCCTCGCCTGGCAGCGCACCCAGCGCGGTGGTACCGACCCGGAGGGGGACTGAGCCGCTCTCGGAGCAATAGGGACCGTATCTGCTCGCACCCGAGGGGAAGCCGCCCCGTTGCTCCGATCCCGGGCCTGCAAGCGGATGGGTGAATCAGCTGCTGGCGCTGTGCTTGGCCGCTACAGTGAGCAGCACGTTCCCGGGTGGAATGTCCGTTTCTTGAGAACTTGCAAATTCGACTGGTTGACGCCGTAATCCGCGCAGGTCAACGAGC # Right flank : ACCGAGCTGACCCACACGGTCCGCTCCCCTCTCACTCCCGACCCATCTCCTCGGGGCGGCGGGGGCGCCGCTGCGTCCGGTGGCCCGCCCGCACGGCCCCGGACGCGACCACTCCCTCACCCTCACCACATGTGCTCGCATTCCGGAGGAGGGTTCCGCGTGTTCGCGATCACCACGTCGAGCCGGTCGCGCGCCGCAAGCAGGTCAGCGATCCGCTCACTGATCCGATCGCGCTCGACCTCCAGATGGTCCACCAGCCCCGGGGGTGCCGTCCCCTCGTCCACGCACGGCAGCACCTCGCGCACGGACCTGCTCGGCAGGCCGGCGGCGAAGAGCTGCCGGATCAGCCGGACCCGTTCCACCGCGGACTCGGTGTACAGGCGCTGCCCTCCGGCATTGCGCTCGGACCGCAGCAGCCCCTGCTCCTCGTAGTACCGCAGGGCCCGAACGCTCACCCCGGCCTCGGCCGCCACCTCACCGATACGCACCGCTCCCCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 11 6744691-6744112 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080599.1 Nocardiopsis sp. MT53 chromosome MT53, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6744690 29 100.0 32 ............................. ATCTTCGTACTGCCGTATGGGCCCGAGGGCGA 6744629 29 100.0 32 ............................. GCCACGGCGGCGACCACCAGTGCGGTGTCGTG 6744568 29 100.0 32 ............................. CCGACGGCCTGGGCGTGCTCGCGTCCATGCTC 6744507 29 100.0 33 ............................. GGTGTAAATCTCCTGCGTCACCCCTTTTCCCCC 6744445 29 100.0 32 ............................. AAGAAACACGGCGCGTGGATCGACGCCTTCGT 6744384 29 96.6 32 .....T....................... GGCAGCAGCACCCAGGCCTGCATGCCGCTCTT 6744323 29 100.0 32 ............................. TTCACCTGCCCGGACAGCGCCGAAAACCCCGC 6744262 29 93.1 32 ..............C.............C CAGCCCCGCATGATCTGCTCACTGGTCGCCAC 6744201 29 96.6 32 ....G........................ ATGGTGTCCAGTACCTCGCGCGGGTCGGCGTC 6744140 29 75.9 0 ..C.GTT..C...............GT.. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 96.2 32 GTGACCCCCGCGCAGGCGGGGATGGACCG # Left flank : GGGGGGTGTTCGTGGGGATAGGAGGAAAGGGCGACGGGGATTTGCTCCTGGAATTCCCGGATGAGTTTTCCGATGTCGTGGCAGCCGGCCCAGAAGGCCACCAGCGCGCGGGCGCGGGACTCGTCCACACCGAGACCGTCCGCGATGCCGCGCCTGACACCGGGGGAGAGGAAGGCGTCCCAGAGGCTCAGGGCTGCGGCGGTGGCGTCGAGGGCGTGGAGGATGTAGGGGTAGCGGCTGCCTTGGAGGTTGCGCTCTTTGGCCCACAGATCGAGGTCGATATAGGTGGGGTCATCGGAGGGATCGGGGGGAGGGGGTGGGGGAGGGGGAGGCATCCGGGTGTGCTCCAGAGGTCATGAGAGCATGGTGTGGAGATTGAAGTTAACGCGGGTGTGCGAGCTTCCGCAGGCGTTTGGTGGATGTGGCCGGATTAGGTCATTTCTTAACCCGCCAGTAGGTCTCGCGGAGATAATGGACCGCGTTATCCCAGGTCATTAACT # Right flank : CGGGCCGGGGTCATCCGCCGACTCGGAGGCGGACGACGCGGTCCGGTGGAAGGTCGGGGCGGCCGGGGACCGGCCGCTCGCCGACCTCCCACCCGGGGGCGCCGACCTCGGCGGCCACCCGCGGCCAGAACGCGGCGGCCGCCCGGTTCGCCTCCTGGTAGTACACCGCCCACCGGCCGGGGTGCGCCCGCAGCACCCGGGCCGCCGCGGCGAGTCCGTGCCCGCGCCCGCGCACCGGCCGGAGCAGGAAGAACGAGGACAGCACCCGCTCCTCCTCGTCGAGCGCCCGGACCAAGGCGAACCCGGTGGGGACCTCTCCCAGCCGGAACAGGTAGGCGCACCAGCCGGGGTCACTCAGCGCCAGGTCCAGCCGCTCCCGGCGGAAGCGGCCCCGCGCGTCGGGCAGCGCACCGGTGAATTCGGACAGGTCGTGCTGGAAGAGGGGCCACAGCCGTTCCAGGGCGGAACGGTCCCCGGGGCCCACCGGTCGAATGCTCAGT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACCCCCGCGCAGGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 12 6974511-6974238 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080599.1 Nocardiopsis sp. MT53 chromosome MT53, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6974510 29 96.6 32 ............................C CGGTAGCCCGGGGCGTGGCGGAGCATCGTCGT 6974449 29 100.0 32 ............................. TACGCATACTTCAAAGTGGCCCGAGGGGATCG 6974388 29 100.0 32 ............................. TGCAGACCACCGGACAGGGTGAAGCCCACCCA 6974327 29 100.0 32 ............................. CGTTCGAGGGCATGGGCCGCGGCATGCTCGTG 6974266 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTCAGCCCCGCGCACGCGGGGATGGACCG # Left flank : CTCTCCGAGGCGCCGCAGCGCAAGCTGCGGATGGGGGAGTTGGCCTTTCTGGCCAGCGGTTCGCTCTCCCGCCTGTCCAACGTCGTCAAGCGCTGTGAACAGCGGGGCTGGGTCGTGCGGATGCCGGACCCGTCCGACGGCCGGTACACCCTCGCCGAACTCACCGACGACGGCTTCGACATCGTGGAGGCGGCGGCTCCCACGCACCTGCGTTCCGTGCGCGCCGTCGTTCTTGATGCGTTGAGTCCGACCGACCAGAAGGCCTTGGTCCGCATCGCGGAGAAGCTCCGTATCGTTCCGGATGGTCTCGGGTGACGGTCGCTCCACGGCGACGCCCGGGAGGGGGATGCGGAACTTGCTTGCGGGCAACCGTGCTGTTCCTCTGCCCGCCTTGAGCCTGCTTCGGTTCTCGTGCCACAGTGTCCGGAGGTGGTGGCTTGGTCGTGCCGAAGTGCACGTAACGCGGAGATGACGCCCCGCGTTTTCCCTGGTCGTTAACT # Right flank : CTCTACGTCGAGACAGTCACGCAAGGTACCCGGTCAGCCCCGCGCGCGGGCTCCGCACCCTGGGCCAGACCGCTATCGGCGCCAGCCTGGCCGGGCTGCTGCTCGTGGTTGCCACCGTGCTGACCGCCCTGCTATCCACCGGCGAGGCCGTCACCGTCGCAGTCCTGCTCCAGGCCCTCATCCCCCGGTCGCCGCGTACCTGTGGTGCCGCTGGGAGGGCCGACTGTCCAAGTAGGTCACGGAGAGTCGAGCTCCCCCGCCCTACCAGCATGGTGAGGCGGGGGAGCTTTTGCGCTGGGCCGCCGGTGCCCCCTCTCCAGTGGCCGCGGCTCGGGGATGGCCTGGTTTTGCACTCCCGGGGGAGCGGTCACCGGACGCCCGGGGTCTATGCGCGGCGCCGGTCCGTGGCCCACACCGCCGCGTCCGGGGAGCGCAGCCACACCGTCTGGGTTCCGCGGTGTCGGTCGACGGTCAGCCCGAACTCGGTGACGTCCGGCGCC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 13 7039561-7039218 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080599.1 Nocardiopsis sp. MT53 chromosome MT53, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 7039560 30 80.0 38 .....T.....A.C...G......G....C ACGTGCGAGCTCTGCGGCGCGCCTGCGCGCAGTGTTGC 7039492 30 90.0 32 CC.T.......................... CCATGGGCGTGGCGGTCCTGCGCCTGGACGAA 7039430 30 100.0 31 .............................. CGTCCAACGCCGACCTGGAGGAGGCGGCGAA 7039369 30 96.7 31 .....T........................ GTCCTCGTGGCGGTGCGCCATCTCGTCGTTG 7039308 30 90.0 31 ...T.............G......G..... CCACCGTCATGTCCAGCCGCAGCGACCGGCC 7039247 30 80.0 0 .........T....T..G...G..G....T | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 89.5 33 GTGCTCCCCGCGCACGCAGGGATGCTCCCG # Left flank : CAAAAAACTCAAAGCCCGAGATGGCTACCGTGTCCGCATCGGCGATCATCGCGTGATCTACACAATCGATGATGGGAGGGTCACTGTTGTGGTCATCAAGGTCGGCCCTCGAGGGGATGTCTATGACCGGTGACGGCTGTGCTTGCAGCCGTTGAACCGGTCCATTGCAGCTTGATGCTCCACGAAACCTGGGCAAAGGTGTTTCCCGGGGTGCGGCGGCTTTGGTGCAATGGCAGAGAGTGCTTCCGTCGGCTTCGGGGATGTGGTCCCCGTGCCGGCACTGCATGAGCACACGTGCCTCGGTTCGGCTTCTGCCTTCTCCGGGCTTTCGGGAGCCGCCCCGCAGCGGAACGTCCGGTGACTGTATCGAGGCGGCCACTGCGCTCGAAGGCTCCGCCGTTCGAGACGCCTGGCACCGAGAGGCCGGGGCTCCCTTTTTTGGCCGGGCCGAGTGGGTCGCTCTTCTCGTCGGGGTCCGTTTCGAACGCTGACCAGAGAAA # Right flank : CCATGATGACGAGATGACCCGTCATCGCGGCGTGCTCCTCGCGGGTGCGGGGGTGGGGGCTCGGAGGGGCGGGAGCGGGGAGCGGCAGCCAAGGGCGTGGGGGCAGGGGAATCGGCGGGATGGGAGCGCTAACAACAGGAAACTGGAAGCGTTTACCTTGGGTGGGAGGCTGTTGCCGTGTGGGGGCAATGGGATATGTTAGCGCCCACCGTCCGGCTCGTGCCCGGCGGGCGTTCACCGAGCACGCGACCGCATCGGCTGTGAAGGAGCTGCGGGTGGCCCAGACCCCATCGACCCCCGGCGCGGCGCGGGAGCCCGCGATGACCGACGTCGCGCGCCTGGCCGGGGTGTCGCACCAGACGGTCTCCCGCGTGCTCAACGGCCACCCCAACGTCCGCGAGCAGACCCGGCTGCGGGTGCGCGCGGCCATCGAGCAGCTCGGCTACCGGCCCAACCGGGCCGCCCGGGCGCTGGCGACCGGGCGGTCGCAGCTCATCGGC # Questionable array : NO Score: 3.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.47, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCAGGGATGCTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [8-8] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 14 7041981-7040547 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080599.1 Nocardiopsis sp. MT53 chromosome MT53, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 7041980 30 96.7 31 .............................C CACCCCTTGGGGCGCCCCGGCCTGGGGCGCC 7041919 30 100.0 31 .............................. GCGAGGGGCAGAGCGAGCAGGACGAGCGCCT 7041858 30 96.7 31 .............................C GCTATCTCAAGCGCAAGGCGGACAAGTCGAT 7041797 30 96.7 31 .............................C GGGTCGACATGGCCAAGGACCGGGCGGAGGC 7041736 30 96.7 31 .............................A CCAAGCCGGGCACAGCCAAAACGACGTCCTC 7041675 30 100.0 31 .............................. AGGGCCTGGTGCTGAGCCGCCAGGGAAAGGG 7041614 30 100.0 31 .............................. CGCCGTCGGAGGTGCGCCCCGTGCTCTTGCC 7041553 30 96.7 31 .............................C GAGAATCGGACAAAACGCCACATCGGACAAG 7041492 30 96.7 31 .............................A AGGGCAAGGACCGCAAGGAGCAGCAGGAAGA 7041431 30 96.7 31 .............................T CCAAGCGGATCCCCGCGTGCGCGGTCTTGTC 7041370 30 96.7 31 .............................C CGGCCACCGCGCCGCCGCGGCGGGCGACGAA 7041309 30 100.0 31 .............................. AAGACATGACTTCACCCCCTGGGGTGCCCGT 7041248 30 100.0 31 .............................. AGCCACATGGCCGCCGCACCGGCCCGCGACC 7041187 30 100.0 31 .............................. GGTGCAGCGGCCACAGTCCCTCCCGGAGCAG 7041126 30 96.7 31 .............................A CCACCCCGTGGGGCATCAGCTCCACCGCGAC 7041065 30 96.7 31 .............................C GGCCGCGGAGGCGCCGGCCACCTCGAGCCCG 7041004 30 100.0 31 .............................. CCCCCAGTCCGAGCGCAGCCCCCGCGGACAC 7040943 30 100.0 31 .............................. CCAGGTAGGCGAGGGGCTCCTTGGTGGGCCG 7040882 30 100.0 31 .............................. GCCACAGGCGACGCGGCAGGCGCGGAGGTGA 7040821 30 93.3 31 ..........G..................A CGGCGGTGATACGAACGTCTCCCCCGATGCT 7040760 30 96.7 31 .............................C CCGCCGACGGGCTGCCGTCGGTGACCGGGCG 7040699 30 96.7 31 ........................G..... GGTGTGGATCTCCCAGGACTTCAAGAAGCGC 7040638 30 80.0 32 .........A......T....GC.G.T... CGTACGATGAGTTGTGCGTTTCATGCGTTTGA 7040576 30 90.0 0 .C......................G....T | ========== ====== ====== ====== ============================== ================================ ================== 24 30 96.8 31 GTGCTCCCCGCGCACGCGGGGATGCTCCCG # Left flank : CGCGGGCGGTTGTTGGAGGCGGGGCACAACTACGAGTTCGAGGTCGTGTGGTGACGGTCCTGGTGCTGACCAACTGTCCGAAGGGGTTGCGGGGACTGCTGACCCGATGGCTGATGGAGATCTCGTCAGGGGTGTTCGTGGGCAGGCCCTCGCGGAGGATCCGTGATCTGCTGTGGGAGGAGGTGCAGCAGTACGCGGGGCAGGGGAGGGCGTTGCTCGTGTACACGAACGATTCGGAGCAGGGGTTCGGCTTCAAGACCTTCGAGCACCACTGGCAGCCGGTCGACCATGAGGGTCTGATCCTCATGAACCGCCCGAAGGAGTCTTCGCCGTCTGCTTCCACCAACCCACCGAAGAAGGGCTGGAGCAAGGCCTCCAAGCGACGTCGTTTCGGCCACTGAGCGATATTCGACTTTTGTGTTCTTTTGGGTTTAGTGTCCGAAATCCAAGAAGTTTGAAAATCGCCTGTTTCCCAAAGGGATCTTCGCAGGTCATTTACT # Right flank : AGGTGTGTATTTGGCTGGATATTTTTCCGGTGCATTTCTCACTTCCGGACGTTGATGGCAATGGTTCATAAGGGGCGATTGCTTGCAAGCCTGGCGTTCAAGGCTTTTGGTGCCCGATGGTGGGCGCGCACGAACACCGCAGGTGGGTGTAGTGGGTATAGTTCGGAGAAGAATTCATGACAGCTGAATCGGTCGAACCGCACGGCATGGTAACTGAGTTGGCTGAGGCGTTGGCCGACCGTGGCTTGGTCCTGGTGTCCGCCGCCTATCTAGAAGAGCTTGAGGACATCGCCGATAGCGCGGTCATCGAAGCTCGTGCCAATGAGAAGACTGTCCCTTTCCGGGTTGAGGACTACGAGTGAGCCGTTACACGGTCGAGGTCACCACGTCTGCGCAGAAGGAGCTGCGCAGGCTTGATTCCTTGGTGCGCAAACGTGTTGTTCGAGCGATCGCCGAACTCGCTGAGGAGCCTCGACCGGTCGGTTGCAAAAAACTCAAAG # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGCTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 15 7053691-7051761 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080599.1 Nocardiopsis sp. MT53 chromosome MT53, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 7053690 30 93.3 31 .........A...................A TCGACACCGACGCCCGCGCGAACTTCGGCGA 7053629 30 96.7 31 .........A.................... GGGGGCGGGGGCGATGGAGGAGCATCACGCC 7053568 30 93.3 31 .........A...................G GAGCCTCCATGCCCCCCAACGACCAGACGAT 7053507 30 93.3 31 .........A...................G TGGGGACCTGTTGCCCCCGGCCCTGCGCCGA 7053446 30 93.3 31 .........A...................G GCGACCAGATCACCGTCATCGCTGGTCACAT 7053385 30 93.3 31 .........A...................G TTCTTCCACATTTCCAGCACCGCAGGCATGA 7053324 30 93.3 31 .........A...................G GCGGTCTCGACCGCAACCGGAACCACTGGGA 7053263 30 93.3 31 .........A...................A TTCGGCCGGGGACGACGATCGACCCCGGCTC 7053202 30 96.7 31 .........A.................... CGATGCTCGATGTCCTGGGCGTGCTCATCTA 7053141 30 93.3 31 .........A...................A CGGTTTCGGCCATCATTATCAGCGACCGCAT 7053080 30 93.3 31 .........A...................A CCCCATAGCGCGTACGCGAACGAAATGACTT 7053019 30 93.3 31 .........A...................G GCGGCACCGGGTGCTCGGAGTCGTCCGGGGC 7052958 30 96.7 31 .............................A GGTCGGTGCCGTCGGTGATGCCCAGGGCGTC 7052897 30 100.0 31 .............................. ACATCATCTACGCAGGCCAGCTCCAGCGCGA 7052836 30 100.0 31 .............................. TCGCGCGACACCGGACGTCCAGGCGGTGCGG 7052775 30 96.7 31 .............................G TGAACTGGTCTGCGGCGTCGACCTGGCCGCC 7052714 30 100.0 31 .............................. TGCCGGGGAGGACGACGTCGACCGCCCCGTC 7052653 30 96.7 31 .............................G ACCGGTTCCGTCGCCGGGCTCTCCTCCGCGG 7052592 30 100.0 31 .............................. GGGCGCTCCTCAGCGGTCCAGGCGACATGGT 7052531 30 100.0 31 .............................. GGTGGTTCACCACCCAGGACCTCGCACTGTC 7052470 30 93.3 31 ............T................G AACTCATCGACCTGGGCCGCGACCTGGGCCC 7052409 30 96.7 31 .............................G ACGGGTCGTCGATCTCGCCGCGGGCGACGCG 7052348 30 96.7 31 .............................T GGACAAGGATGGACAGCCTCCCGAGAACGGA 7052287 30 96.7 31 .............................T CCCACTCCTCCTTCAGGGAGGGCTGGCGCTC 7052226 30 96.7 31 .............................A CCACCTACACGCTGACGCCGGCGTACCGGCT 7052165 30 100.0 31 .............................. GGATCACGTCCACCTCCGCCGCGGAAAGGTC 7052104 30 93.3 40 .............C...............A CCTGCCACCCCGCCGCCCGGGCGGTGGCCGCCAGCCGGGA 7052034 30 90.0 31 .............C..............GG GCTAGGTAGCTAAAGGCGACCGCGCCTTTCT 7051973 30 93.3 31 .........................C...A CGGCGTCAACACCGAGTGGAGATTCGGACGA 7051912 30 96.7 31 .............................G AGGGAGCGGCGGGGCTGAGCGAGGTGCCGCT 7051851 30 96.7 31 .............................G TGAAGCTGGCGCACAAGGCGTGCAACGAGGA 7051790 30 90.0 0 ..........T...T..............G | ========== ====== ====== ====== ============================== ======================================== ================== 32 30 95.5 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : CCCGGACACGCTCGAAGAGCGGGGGACGACCTTCGCCGAGGTGTGCGCCGACCCGGACACCCCGCCGCGCACCATCCTGCGCGACCTCGACCTCGTGCCCGAGGGCGCCGAGGGGCACCTTTACGAGGCGTGCTAGCCCGGATTGCAGACGGGGCCCATGGTCACGTTTTCATTGCCGAATCCCCGCGAGACCCGGCCCCGAGTGCGGACATTCCACCCACCCCCGGCCGTACCGCCGCCCTCGGGTCGACCGGAAAGCGACGGAAGCGCAATCGGTCGTGTACGGAGAGTCCCGGTGTGGTGCACAATGAATCTGTCGGTGTTCCCTTCCTGGAACTTTCACGCACCGACAGACCCCGGGGGTGCTCGCACCCCCGGGGTTCTGCTTTCCCCGGTTCTTCCCGCCGTGCGTACAAAGTGGCGATTCGAGACCAGTGTCCGAATCTCCAGAAGTTTGAAAATCCCTTAATATCCGGTGGTATCTTCCCAGGTCATTTACT # Right flank : CCTTCTCCGGTCTTTCGGAAGCCATTCCGCGGCGGAACGTTCGGAGACTGCGTCGAGGCGGCCACCGCGCCCGCAGACTCCGCCGTCCCGGAGGCCCGACACGGAGAGGCCGGGGATCCCGTTTCCGTCCGGGCCGAGTGGGTCGTTCTCCTCGTCGGGATCCGTGCCGAACGCCGACCCGCAAAACACAGGTTCCTGGGCACGACCGCCCGGACGTGCTTTGCGGCCGAATAGGATCGGCCTCTGGCCTTTAGCACGACTTATCACCCTTCCGCAGGTGAACCGGGCGGTAGGCCATGACCGGGTCCGGTCAGTACAGATTTACGGTTTCCCCTGTAAAGCCGTAGCCCCAAGGACTATCAATGTGCCCATGACGACTGATGGGCACCCCGAGCCCTGGGTGGCCTCCCTTTTCCCTGCCGCGCGCGCCGTGTGGGCCAAGCACGACTTCGACACCGACGGCTGGCTCCCGCTGTACCGCCACATGGCCGACAGCGCCG # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : GTGCTCCCCACGCACGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //