Array 1 520200-521687 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJT01000002.1 Listeria monocytogenes strain FSL L7-0339 NODE_2_length_526597_cov_83.961470, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 520200 36 100.0 30 .................................... AAAGATATGATTATCGAAGTGCGGGGGCTG 520266 36 100.0 30 .................................... TTGCATTAGGTCTTTGGGGCTTAAATGACG 520332 36 100.0 30 .................................... TTGGAAATTGAGCGCAAAACATTGTATAAC 520398 36 100.0 30 .................................... ACAGCTTTCTTTCTAGTGTCCTCTGAATAT 520464 36 100.0 30 .................................... ACAAAATATTTAATATTACTGATGGAAAGA 520530 36 100.0 30 .................................... CCAAGAATTTACATTAGAGAATGGAGCAAC 520596 36 100.0 30 .................................... GAAAACGAATGACAACAGAAGAAAGAAATA 520662 36 100.0 30 .................................... AGTTGCTGTCACTGTGACAGCAGAATAAGA 520728 36 100.0 30 .................................... TAAGAAAAGGTGACATGCTACAACGAGAAG 520794 36 100.0 30 .................................... GATAACGACAAACTAGAATTAACAGATGAA 520860 36 100.0 30 .................................... GCGGGATTACATTCTAAGAATAAGAGTGCC 520926 36 100.0 30 .................................... AAACTAAAATAAATTTCGGCTTAAGTGTTT 520992 36 100.0 30 .................................... TGATTATTGTCCGCAATGTTTCGAGTGCGA 521058 36 100.0 30 .................................... CTGTTTGGATTGGTGTTTTGTGTCGCAGTA 521124 36 100.0 30 .................................... AGAAAAAGTGAAGAAAATAAAACATTTACA 521190 36 100.0 30 .................................... AAGAAAATCAACAGTTTCTAACTGGGAAAC 521256 36 100.0 30 .................................... TAGCCGTTCGCTTTGAGTTAATTGGCTCGC 521322 36 100.0 30 .................................... TGTGACAATCGCATAATCAAACTTAATCCC 521388 36 100.0 30 .................................... ATTGATGCTGTCTTTCTCACTAAACCCATT 521454 36 100.0 30 .................................... CACATCCCCGGAAAGTTCGCAAATAGTTTT 521520 36 100.0 30 .................................... CTGACGACATAGCTTCTCGCCATTTTAACC 521586 36 100.0 30 .................................... ATTAATTTCTTTCAGTTTTGAATTCATGCC 521652 36 75.0 0 .........................A.C.ATGTCTA | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 98.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAATTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AAGAAAAAAATATTTTCATAAATCAGGTCTTAGTAGATTTTAAAAATGACTACAAAATTTTAAAAGGGAGATTCCACAATGAAAAAGACATCAATCATTTTTATTTTTTGCGCATTCCTCCTAACAGCTTGCTCAACCACCCAAAAACAAACACAAACCACGGAAGCTATCGGCACAATTGAACAAGTAGAAACGGAATCAGTTTTAATCAAAAATTTCAAAATAAAAAACGATAATAACACGCCAGAACTGAGTGTGCGGTTCCACATCAGTGAAAAGTACCATGACGAAACGGGAAACAAAATAAAACGAACCGAACTAAACAAAAATGACAACATAAAAATCATTTTAACAAAAGATTTCCCAATTCAAGAAACCTCACCAGCCCAAATAGACCCAAAATACGTACAAAAAATCATCCTGCTAAACAAATAAAACTCTCTCGCCCACAGAGAGTTTTTTCTTTTCTTAAAAAAACAAACTCAAATTCCTTGCCTTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 301455-301809 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJT01000001.1 Listeria monocytogenes strain FSL L7-0339 NODE_1_length_985861_cov_65.381727, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 301455 29 100.0 36 ............................. CCTCTTTCACCATGTAAGTTCCGTCATCATCTAAAC 301520 29 100.0 35 ............................. TGATCTGGATAAGTTACATATAGTTCACATTTGAC 301584 29 100.0 37 ............................. ACAGTCGCATACTTAGCAATTCTTTTCATGCTGTCCT 301650 29 100.0 36 ............................. TGAAATGCTTTGATTGCAACCACATATCCATCCCGG 301715 29 96.6 37 A............................ GAAAAAGCACTTTTCAATACTCGTTCGTTTTCTTTTT 301781 29 79.3 0 ......A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 96.0 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACTATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAAGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTTGACCTTGAGTAGTGTGAAAAATACCAGGGATCGACAGAAAGTTGTAAGTGGTTGGGGGAAGATGAGTTTGGTGATATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGATCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGTTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCACCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCACTAGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 319830-322071 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJT01000001.1 Listeria monocytogenes strain FSL L7-0339 NODE_1_length_985861_cov_65.381727, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 319830 29 100.0 34 ............................. AAAATGGACTTTAAATCGTCGCCATTCCGCATGT 319893 29 100.0 36 ............................. AAATTTGCATAAGCGGTCTTGGCCGATAAGAGCTCC 319958 29 100.0 36 ............................. ATCTTCCGTATCGAAATGCCTAGCAATAATGGCCGC 320023 29 100.0 37 ............................. ATTATATTTAAGCACCGCTATATCAACCGCGATGCTC 320089 29 100.0 36 ............................. TGAAATGACCCGTCGTTATCGTTGTGATGTATCCCG 320154 29 100.0 38 ............................. TAGAGGACTATGCTCCTAAACAACTGACTCCTGAAGAG 320221 29 100.0 37 ............................. ACCATAGACCCAAATTGGGTCGGTGCATTGGCCCAAA 320287 29 100.0 36 ............................. TGGCCATAAATGAAGGCAAGCGATTAACCGGAGTTC 320352 29 100.0 34 ............................. AAAGTAGCCAAGCGCTCTTCAATGTCTCGACTCA 320415 29 100.0 36 ............................. AATTTTAGTAGCTTCTTTTTTCAAATATTCCGCATC 320480 29 100.0 35 ............................. TTTGTATCCATTAACCCTGTTTGAGCGTCTGTCAT 320544 29 100.0 36 ............................. CTCCCACGAGCAGTGTCATTGCTAAGAAGATAAAAG 320609 29 100.0 37 ............................. TGAAGTAGAGTAGCATATTGCATTTTAATCATCATCC 320675 29 96.6 36 ..................A.......... TTTTCAGAACGAACAAACTCTTTAACTGTCAATCTT 320740 29 100.0 36 ............................. GAAATTAGCGCTATATAAATCATTACTTGCAATCTA 320805 29 100.0 36 ............................. CAATTATTTGTTCCAGCTGATCAAGTTCAAAATAAC 320870 29 100.0 36 ............................. GTTCTTGCGTTCTCGTTGCTTGTCATCTAGTTCATC 320935 29 100.0 35 ............................. GCAGCCAAAAACGCGGGCAAGGGCGTAGCTAATAG 320999 29 100.0 34 ............................. ATACAACGCTGGGAGTTCGAAGCCCTGAAAAAAG 321062 29 100.0 37 ............................. ATTGGACCGGAAACTGCAGGCGACTTACTTAATTATC 321128 29 100.0 37 ............................. ACAGTCAAATGATGATGACCAACTTCCTCTGCCAAAG 321194 29 100.0 38 ............................. TACATTAGTGTATCGAAATCCGTATCGAAAATTTCTAC 321261 29 100.0 37 ............................. ATAAAATTACACATTGGACTCCAAATATTTTCAGATG 321327 29 100.0 36 ............................. ATTTGTTGGGAAAGAATCAACTTCAAGTTTAGATTT 321392 29 100.0 37 ............................. CTTGATACTTTTTAAGTAATATTTTGAATGTTCTCAT 321458 29 100.0 36 ............................. TTTGACTTGAAGAAGTAAAGTACCTCCTGCTTTACT 321523 29 100.0 34 ............................. CACATCGAAATAAAGTTCTTTGCTGTCCGGCTCG 321586 29 100.0 36 ............................. AATGGTATATTTTGTCAACAGGTTTATCCTATTTAG 321651 29 100.0 37 ............................. TATGTGATGTTACATATTCTTTTATATGGTTCACGTT 321717 29 100.0 36 ............................. ATGTCTGCGTGCCCCAGTCTCTCTTGGATTACTTTG 321782 29 100.0 36 ............................. TTTTCAATGTGCGAGTATGCTCCTCTGGAAATTCCT 321847 29 100.0 37 ............................. ATCTTGAACCGCTCCCCATGCTTTTTTAGCGCCATCA 321913 29 100.0 35 ............................. TAACAATGAAAAACGGATTTACAAAATTAGCGTCC 321977 29 100.0 36 ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 322042 29 93.1 0 .......................A....C | C [322065] ========== ====== ====== ====== ============================= ====================================== ================== 35 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCACTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGCCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAATCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCGAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCAATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //