Array 1 109951-107969 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKP01000002.1 Salmonella sp. gx-f5 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109950 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 109889 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 109828 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 109767 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 109706 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 109645 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 109584 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 109523 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 109462 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 109401 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 109340 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 109279 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 109218 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 109157 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 109096 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 109035 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 108974 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 108913 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 108852 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 108791 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 108730 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 108669 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 108608 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 108547 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 108486 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 108425 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 108364 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 108303 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 108242 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 108181 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 108120 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 108059 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 107998 29 100.0 0 ............................. | A [107971] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129686-127583 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKP01000002.1 Salmonella sp. gx-f5 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 129685 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 129624 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 129563 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 129502 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 129440 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 129379 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 129318 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 129257 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 129196 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 129135 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 129074 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 129013 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 128952 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 128891 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 128830 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 128769 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 128708 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 128647 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 128586 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 128525 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 128464 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 128403 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 128342 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 128281 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 128220 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 128159 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 128098 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 128037 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 127976 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 127915 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 127854 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 127793 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 127732 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 127671 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 127610 28 79.3 0 ..G............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //