Array 1 3-618 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_FNFT01000001.1 Methanoculleus thermophilus strain DSM 2373, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                                                                  	Insertion/Deletion
==========	======	======	======	================================	=================================================================================	==================
         3	    32	 100.0	    38	................................	CAACATATTCGCGCGCCAAAACTAACGGCATCGTTGGA                                           	
        73	    32	 100.0	    34	................................	CAACACGTCGGTATAGTCATCTGCGACCGACATC                                               	
       139	    32	 100.0	    34	................................	TCCAGGTTGGGACGCTAAAGGGGGTGCTCCCCAT                                               	
       205	    32	 100.0	    35	................................	TCAAGCAGTCTAGGACTGAGTAAACACATTAAAAA                                              	
       272	    32	 100.0	    36	................................	CGTTCCAGTTCGTCGTTAATCAGCCTCTCCATCGCC                                             	
       340	    32	 100.0	    34	................................	TCGCGGCCTCGAAGGATTCCCTGGAGGCAAAGAT                                               	
       406	    32	 100.0	    35	................................	TAAACCGGCTTGCTCCATCCTCGAACAAAATGAGG                                              	
       473	    32	  93.8	    81	.......................AG.......	CGCCGGACCACGGGCAGGTCCGGGCCGAGGGTGTGTGGATTGAGGTATCCCCCTCCGTTCATCCTGCCCAACTCAAAGATT	
       586	    32	  75.0	     0	..............AA.C..AC.......TCC	|                                                                                	A [612]
==========	======	======	======	================================	=================================================================================	==================
         9	    32	  96.5	    41	GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	                                                                                 	       

# Left flank :   GCG
# Right flank :  CATGCTTCTGGCGGGACGTCCCTCACTCCGCCCTCGTCTCCTCCCACCCGATACAGACCCTGATCGGGACCCTCTCCGCAAGCGCCGCCGCGACCGGCGAGCGCCGGTAGGCCCGGTTCACGAGGTCCTCGATCGTCTCCCGCGGTGCGTCGGCATCCACCCGGACGGTCAGGCGGACCTCGTCAAGGCCCGGCCGGGTGTTGCCGATCTCAAAAAAGCCCGCGAGGTCGAGGTCGCCCGCAACATCGATCTCGATCAGGTCGACCTCGATCCCCTCCTCCGCGGCGCTGTAGGCGATAGAAGCCGCGATGCAGGCCGAAAGCCCCGTCAGCACCAGTTCCGTCGGGCTTGGGCCCCGGTTGCTCCCGCCGAGCATCGCCGGCTCGTCGGCCGGGACGGCGAAGTCCCGGACGATCGTCGTCGTGTGCGCACCCCCGTTCCAGGTTGTGAGGGCGGAGAGGGTCCTCTCGCCCGCTGCAGGATCCCTTGTTATCCGCTCC

# Questionable array : NO	 Score: 8.61
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:-0.46, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCCTTCACGGGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-6.40,-5.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-11] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [0.0-33.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.78,0.64   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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