Array 1 11953-10398 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYKS02000110.1 Serratia sp. DD3 SRDD_contig000110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 11952 28 100.0 33 ............................ TATCAAGCAGTACATAGACAGCCTACCGCTAAA 11891 28 100.0 33 ............................ TGAACTGAACCCACTCAGACCATGAAACAGGAT 11830 28 100.0 34 ............................ TATCTTTTGCTCGTTCATCGTCGCGATCATGCTG 11768 28 100.0 33 ............................ CTACAGTGACGATGGGCGGACCTGGCGGGGTGC 11707 28 100.0 33 ............................ TTGTTCACGATTGATCATAATGAACGACTCCGA 11646 28 100.0 33 ............................ CCTGTAGCAGCGAGGTAGTTATGTCTCATCGCG 11585 28 100.0 33 ............................ TCTTTCATATATCGACCAATCCCCTCAGGTGTC 11524 28 100.0 33 ............................ CATTATTTACGTTGCTAATAGCAAGTCCTTCAT 11463 28 100.0 33 ............................ TGTCCAGCTTTTGCAGCTCATAGTTTAGGTCTA 11402 28 100.0 33 ............................ CATCTTCGTCTTGGGATGGGATGGTTTCAATAT 11341 28 100.0 33 ............................ TCATAATTTTATCCTATTTAAAATCGCCCTCGG 11280 28 100.0 33 ............................ TCGCCTGGCGCTGTGCCTGGCTTTGCGCTGTGT 11219 28 100.0 33 ............................ TCTGGTTTTTTCTCATCGCCTCCGTCAAAGACA 11158 28 100.0 33 ............................ TTTACCCAGAACTGATTTACCAGCGCATACACA 11097 28 100.0 33 ............................ CTCGGCCCGGTTGCCGTTGAATCGCTGGTCGAT 11036 28 100.0 33 ............................ CCAGATGCGGCGATGGTACTGGCTCAAGCTGAG 10975 28 100.0 33 ............................ CGCCAGTGTTTACCATTTTGCCGATGTTCTTTC 10914 28 100.0 34 ............................ GAAACAGGGGTGGCGCGGTGAGCCATAACTCAAA 10852 28 100.0 33 ............................ TTCTTTTTGAGCGTCATTAACAACATCATTCAG 10791 28 100.0 33 ............................ TGCAAGATGAGTGGAAATAAAAAAGCCCCGTAG 10730 28 100.0 33 ............................ TCCTACCCGATGGCCTTGAGCAGCGTGAATACA 10669 28 100.0 33 ............................ TAAAGTGATACCTGTTTCCCGCTCCGTGCAAGT 10608 28 100.0 33 ............................ TTAATCAAAAGGTGGACATCACGTCTTATAACG 10547 28 96.4 33 .......T.................... CAGCAGGCCGCCGCACAGGTTGAGTACGCGTTT 10486 28 100.0 33 ............................ CCTATTAACTCATGGGTTATCAGCTCGGGTTAC 10425 28 96.4 0 ...........................T | ========== ====== ====== ====== ============================ ================================== ================== 26 28 99.7 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : | # Right flank : TGCGCCTTTAAGGCAGCTGCGACAGACCAAACGCTAAAATCTGCTGAGTTCCGGTTCTACAACATCAACGATGCCGGACAAGAAGTGGAGTATTACCGGATCTCACTGGAGAATGTGAAGGTGATTTCAGTCAGTCCGGTGATGCACGATACACAGGGCTGTCCAGGCACAGGCCATATGGAAGAAGTTGCCCTGAACTATGAGAAAATCACTCACCTGTACAAAAACGGCAATCTGTTAGCTCATGACTCCTGGAGCGAACGTCCAACGGCGTAACTCAAAGTCCTCCGGGGCTTTTTTCTTTTGTACCACCCCGCAGGATTGAACATAACACCCGCTCTCTGCACTGCACTTTCGCTCGCTATTATTGTTCATTTTTTTTGAATGAAATACGCAAATCGTTTCGATTTTAATTATCTCATGGTTGTCATATCATTTATCACATCAGGGAAAACCCCCTAAACCAAACAAAATAACTTAAGGAATACGACCATGAAATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 127833-130546 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYKS02000041.1 Serratia sp. DD3 SRDD_contig000041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 127833 28 100.0 33 ............................ TATGAAGTCCCGTTATATTTCCTGAATGAGTAT 127894 28 100.0 33 ............................ CGCCTTTGTCATTGCAGTGGCGACCACGCCAAG 127955 28 100.0 33 ............................ TACTGACGTACACTAATGCACGTAAAAAACCTA 128016 28 100.0 33 ............................ TGCGAAGACCGCTACCAGGGTGATAAATTAATT 128077 28 100.0 33 ............................ CGATTCGACAGCGTATGCCTGTGAGCTCTGGGC 128138 28 100.0 33 ............................ CGGTCTGCGTACCGTCGCTAATGGGTTCGTAAT 128199 28 100.0 33 ............................ TAGTGTCTCTGTTTTTTGATCCGATGCGGTGTG 128260 28 100.0 33 ............................ CGCCTTGCTGATCGGTATATTTTTCTGTTTGCA 128321 28 100.0 33 ............................ TCTCAGCGCATCAGATATGGTTGGAAATGTAGC 128382 28 100.0 33 ............................ CGATGGCGGATAAGGTTAAGCAAAAATGAAACC 128443 28 100.0 33 ............................ TTTCATAGTCATCCGATCCCATCCAGTTAGACA 128504 28 100.0 33 ............................ CCTGCTGCTCCCTGGCTTCGGCGTACTGCGGGC 128565 28 100.0 33 ............................ TTGATGAGGCTTGGTCGCTTATTGGGGAAAGCG 128626 28 100.0 33 ............................ TCATGTTGGACGGTGTCAAAGTATTGATGATGC 128687 28 100.0 33 ............................ CGTCAGGGCATCGACCTATAATCCTGAGTCCAT 128748 28 100.0 33 ............................ CAACTGACGAGTTAGTGGAGGACGAAAAAGACC 128809 28 100.0 33 ............................ CCGAGTTGATGAGCGTTCCGCCACGGTACAGGC 128870 28 100.0 33 ............................ TGATTGAGCACCATTTAGCGTCTGACTTGTCGA 128931 28 100.0 33 ............................ CGTGTGATGCCGCACAAGTAGATGATCAACAAG 128992 28 100.0 35 ............................ CAAGTACCAACAGATTACCAGCAAATTACCACAGA 129055 28 100.0 33 ............................ CTTACCACCTGCCAGAGTCTGAGATCGAAAACT 129116 28 100.0 33 ............................ TAAAACGTGAGCGCGGCGCGGTTGGCATGGTGC 129177 28 100.0 33 ............................ CGATTTGGCGCAGACATATGCAAATCAAGGGGA 129238 28 100.0 33 ............................ TAACAAAGGCTCAATGCTTATCATTTGGCGTCC 129299 28 100.0 33 ............................ CGCCGATGGCCTTGCGGTGCTGAATGTCAGCGG 129360 28 100.0 33 ............................ TAATCGCGGCCATTGGTGCATCGGCGCCGCATA 129421 28 100.0 33 ............................ TCGTCACGGTGAATCGGGCGTGGTTTATGCCGA 129482 28 100.0 33 ............................ CTTCAGCCAGCCCTATTCACTGTACGTGCTGAG 129543 28 100.0 33 ............................ TATCACTACCTCCACCCCTTCTGGCGGCGGATT 129604 28 100.0 33 ............................ CTTATTTACGATGGCATTCGCCTTGAATCTTGG 129665 28 100.0 33 ............................ CCGATCCACAAATCCTTTCCGGGCCGATTTCAG 129726 28 100.0 33 ............................ CACGACTGCATTGATTGAGTTGTTTAAACGGGA 129787 28 100.0 33 ............................ TGGGTTTGATCGGGGCGGGTATTTTCTTTTCTT 129848 28 100.0 33 ............................ TGCTATGTTGCGCTTAGCTAACACAAAGCCTGG 129909 28 100.0 33 ............................ CAGCGGCTCGTTTCATGGCACCAGATATGCCAC 129970 28 100.0 33 ............................ TAAGCACGGCCAGTTCTCGATGCTGACATTCAC 130031 28 100.0 33 ............................ CATGAGAAAGGCGGCGGCGAGCAGCTAAAGGTG 130092 28 100.0 33 ............................ CAAGTGGGTCGAGGGGATCCTGTGCGGATTGCT 130153 28 100.0 33 ............................ CATTGCTGTTCGTGAGCAGCTTGAAACTGGGTT 130214 28 100.0 33 ............................ TAGCTGGCTGGGCATACTGATTACGACATTAGG 130275 28 100.0 33 ............................ TCAATCAAGCCCTGACTTTAACCGGTCAGGGCT 130336 28 100.0 33 ............................ TTCATATAGTGCTCTGGCTCTATACATTACCTG 130397 28 100.0 33 ............................ TGGCGACCTTTGTTTAGCGGTTCGCGAATCAGA 130458 28 100.0 33 ............................ TATATATTTAATTCTCCCATCATAAGCATCCTG 130519 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 45 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAGGAAAAACTGTGTATTGATTTGGCATTTTCTCTCTCTCGAGAAATGGCCGGCCGATATGATAAACACAAAGTCTCCGACGAATTCAGAAAGCGGGTTATTGCCATTGATTTGCTCAATCAGATCACAACTGATGTTAATGAGTTGATGGGGGTTAAATATGCTCGTCGTACTCGCAAATGACTTACCACCAGCAGTTCGTGGGCGTATGAAACTCTGGTTCGTAGAGCCTCGCCCGAATGTGTTCGTATCGGGTGTGAAAGATTCTGTCGCACAAACAGTGGTTGATTATTTGATGCAGTATTCGCCAGCAGAGTCTGGTCTTATGCTGTTTAGAAGTATTCCTCAACCGCCAGGTTACGAAATTCGTTACAAAGGAGAGGTGAGGAAACCGATCATTAATATCAGTGGATTACAACTTATTATCGAAACCCTGAAATCCTCATAATCCACAAATATAGTGTTTTAATTACCGCTCTTTCACAATATATTGGT # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //