Array 1 345857-344227 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFH01000001.1 Photorhabdus laumondii subsp. laumondii strain TT01-23 TT01_23_scf0001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 345856 28 100.0 32 ............................ TTTCTGTGGTTATACAACAGAAGCGATGCATT 345796 28 100.0 32 ............................ ATTCTCCGCCGCCGACATGAATATAAGAGCTT 345736 28 100.0 32 ............................ TAACACTCCAAAAAAAGTCGCTCCACCCGCTT 345676 28 100.0 32 ............................ TACTGTTTCGATATGTAATCCAGCGTAGTCAG 345616 28 100.0 32 ............................ GGATGGTTCAACGGGGCGTTATGCCTGGGTTT 345556 28 100.0 32 ............................ AAAACCGGCGCTGCGGCCATATTTGTTGTCAT 345496 28 100.0 32 ............................ AAGAATTGGAGTTTGCACTCTGCCAACTGAAA 345436 28 100.0 32 ............................ TGATCCGGATACGCCGGAACTGGAACCACTAC 345376 28 100.0 32 ............................ TCTAATCGTTCTCAAAATACATATCCATAGTG 345316 28 100.0 32 ............................ TGCATCTGGCCAAATGGATTGCCCGCAAACAC 345256 28 100.0 32 ............................ AAAAGGTGACTGGATAAGTTTTGAGCCTACCG 345196 28 100.0 32 ............................ TCCGGCATAGTTACCTATTACAGTAAAAATCA 345136 28 100.0 32 ............................ CTTGCCTTTCGCGCTCTTGGATCTCCAAGCAA 345076 28 100.0 32 ............................ CTCTGGATGTGACCTTTATCAACGAAGAAGAT 345016 28 100.0 32 ............................ GAAGAGATACGTTATGTAGCATCGGAATTAGA 344956 28 100.0 32 ............................ TTAACCCAGCGTCTCTTCCAAGTCACTTGCTG 344896 28 100.0 32 ............................ ACAATAGTAAAAGGAGAATAATATGAGTGATA 344836 28 100.0 32 ............................ CTAGCATCACGTAAGGATAAAGAATCAGGAGA 344776 28 100.0 14 ............................ CATACCAGAACTAG Deletion [344735] 344734 28 100.0 32 ............................ ATGTGGGTAGTATATCCGCGGAAGCGTTATTT 344674 28 100.0 32 ............................ TCACGTCGGTATCTCACTGGGGACCTCCCGTC 344614 28 100.0 32 ............................ TTTCAGGATTTTACCCATCAGGCGGGGATTCA 344554 28 100.0 32 ............................ CTCAAGAAGTTTACCGGTTTCTTACCGTCTGC 344494 28 100.0 32 ............................ ATAACAAAATGCCGCATTCGATGCCATTTAGC 344434 28 100.0 32 ............................ TTTCATTTCATTGCTGATAGTGCCGCCCTTGG 344374 28 100.0 32 ............................ AGACAGATTAGAAGTGTATGTGACAGAAGGAA 344314 28 100.0 32 ............................ TGAGTAAGCTTCAATGAGTTGACTTATTTGAC 344254 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 28 28 100.0 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGATGATGTACGAAGCTTTACAACCAGCTATCCGTTATATGCAACGCCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCAGATAATCATCGTAGTGGGAAGTTGTTGGAACGATTGGGTTTTGAACGTGAAGGCTATGCTAAGAAATACCTGATGATTAATGGAGTTTGGCAAGATCACGTATTAACCGCGTTGACAGATGAAAAATGGAGTGGAAAAAGTTGATTATTACGCTGTACTGTCACCAAATAAAGTAAAGCAAATTGGTAATGATGAATTAAATCACTGTTGAAAGTCAGCCTTCTCCACCCCTTATTTTTGACCCTTTTTTGAGGGTGGATTTTAATCTATTGATTTTTAATGGAATATTATTTCTCTTGTAAAAAAGGGTTTTTTCATTGTTTTATCAATATATGCTTTAATTGTCAGTAGGTTGAAGTTAATATGTAACA # Right flank : TGAGTAAGCTTCAATGAATTGATTTATTTGACGCACTGACTTCGGTTGGTGCGTTTTTCGAAGTGGCTATTTGGGCTTTCTGTAGTAAGGCTAGTTGCAAGGTACCATCATTTAGGCCAAATACAATGTTACATTGGCAAATTATAAAAGTTAATGATTTCTAGTGTATGAGAATGAATTTATGCATACTCGCCGATTTTGTTAACAAAGTGAATGATTAACCATGGTAGATTCATATAATAAGTGCAATATCGTTCCTCTTAAAATCAACATGTCCGTATTACTTTAAATTATTAAATGGACATTTTGTTATTGATTATCATGAAAATAATTTGAATGGTTTCTTTAATTCGTATAAATAGGTATTATTCTGATTAGTATATTTAATAAATATTGAAGTTCTTTTTTATAATGATTTGATAAATCATAACTTTTATTTCATATTCACTGGATAATGTTGGTTTAATTAAAAACAGATAAATAAAGAGTGATTGAAAATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4915-3389 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFH01000026.1 Photorhabdus laumondii subsp. laumondii strain TT01-23 TT01_23_scf0026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4914 28 100.0 32 ............................ CTGTTGAAATGTCGCCCCTTTTGCGCCGATGC 4854 28 100.0 32 ............................ AAACAGCATTGAAGCGGAACAAAGCGTTCTGG 4794 28 100.0 32 ............................ ACAAGTAACTATTTTCGTTACCGTAACCTTCT 4734 28 100.0 32 ............................ ATCAAGTAGTGCTTACAAAGGAGAAGAATGTA 4674 28 100.0 32 ............................ TAAACGATAACCCCATGCTTCTAATGATTGAG 4614 28 100.0 32 ............................ TTTCCGCTGTACGTTGTACTGCACTATTTAAT 4554 28 100.0 32 ............................ ATCAAAGCACAGCAACGAACAGGCAAGGAAAG 4494 28 92.9 32 CC.......................... TGATACGTCCACAGGTAGCTATTTTCGTTACC 4434 28 100.0 32 ............................ AAGGGAGTGGACCAAAGGGTAAACCTCAGTTA 4374 28 100.0 32 ............................ AATCAAACTCCAGTCAGTATCGCTATCCGTAC 4314 28 100.0 32 ............................ GTAAACAAACGAAGTATCGGTCTGCCGCTCTT 4254 28 100.0 32 ............................ AGACGTGCTCCTTGGGTCCTCTCATTAAGTGT 4194 28 100.0 32 ............................ TGCATCCATCAACATTAAGCCCGTTGACGATT 4134 28 100.0 30 ............................ GGTAGCGCCCGATCCCTGATTCAGCTTTAA 4076 28 100.0 32 ............................ TTACATAGGCGGCGAGTTCTGCACTGATAGAA 4016 28 100.0 32 ............................ GAGATGAATGACATTGCGCTTCAATGGCAAAC 3956 28 100.0 32 ............................ TAACACATCAGCAAGCTGTTGCTGTGGCAAGT 3896 28 100.0 32 ............................ ACACGTCAGTTCGATAATAAAATCCAGGTCAT 3836 28 100.0 32 ............................ AAAATGAGAGTAAGACGATTAGATAGCGATCA 3776 28 100.0 32 ............................ TTTCTCTGTATCAATAACCGCTGTTGTGCCGC 3716 28 100.0 32 ............................ AATGAAATTAATCGTTTCTCTTACAATATTTC 3656 28 100.0 32 ............................ TACTATGTTGGGATATGCTGCATTATCTAGAA 3596 28 100.0 32 ............................ TCTTGGCCCACATGCGCCACAACGTGGGATGG 3536 28 100.0 32 ............................ AGTATGCACCTTGCGGAAAGCGACAAAGTGGT 3476 28 100.0 32 ............................ AAATCCCCGGTCGCTATCAGTAATTGCATCAG 3416 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAGGAAGCAGGTCTGGATGTTGTGATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTTTCAGCTTGTAGTTATTTGGTTTCTAATTAGTGGATGAAGGGACCCTGGCACCAATATCTAATGTAAACTTAAGGCGTTGGATGAGAAGCGGTGTCCGGGTTCCAAGTGTTCAAAATAATGTTTGAGTTGGATATTGAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTACAGTTATTACAATATCTTAAGGAAAATTTAGTTGCTCTTATTGCTGCTAAATTTTGCCAGAATCTACACTTTTATTGCTATAAGATATGGTGCTTTTGTTGTGCCCTAGTTTTGACCCTTTTTTATCATCAAAAAACAACCTATTAATTTAAAAGAAAAATAAAACATCTCCTGAAAAAAGGGTTTTTTAATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : CGCGATAACTGCCTTAGGTTGTTAGGTATAATATTGGAGGTTAATTGCGCAGTCTTGGGGCCAGTAGTTGATGGCGGATGGATTCTGCTAGCTCATCGAGAGAAGGTTGCTCTGGATGTTCATCGGATGTTTCATAGGCTAATTGTGCTTCGGCCAGATAAGTATGTACAGGTTGACCATTGTCATCTTCCATCACAACGTGATACCAGGGGGCGGAACGCAGGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGTGAGTATTCCACATCAATATCCACGATGACTCCCAAATAACCCAGAAGTTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGTCTTGTATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCTGTACCCGGTAGTTGAAGCCATTTTTTGTTTTAAATTGCAAATGTGGCTTCATCTATTTTTAGGTTAGCTGTAGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 27753-26405 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFH01000002.1 Photorhabdus laumondii subsp. laumondii strain TT01-23 TT01_23_scf0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 27752 28 100.0 32 ............................ ACAGCTCACGAAATGCAACACGATGCATGATA 27692 28 100.0 32 ............................ AACCCGCTTCTGCTGCGGATGCTGCTGGAGTT 27632 28 100.0 32 ............................ TGGAATAAGAGAGTAAATGTGGAGGAGTAGCT 27572 28 100.0 32 ............................ AATCAGCAACCCTATTCACCGGAGACGTTCGA 27512 28 100.0 32 ............................ CAAGGGCACGATTTCCCTTTGGTTTTATATGC 27452 28 100.0 32 ............................ GATGTGCGGAACAATTCAGTCTGCAAATACGT 27392 28 100.0 32 ............................ AATCGAAGAGCTTCATCCTTGTGAGTTTCTTC 27332 28 100.0 32 ............................ TGTCCAAAGAGTGAAGCCGGTTCCTCCTCCCG 27272 28 100.0 32 ............................ GGCTGATGAGACAGTCCGATAATAGAACCCAC 27212 28 100.0 32 ............................ ATACCGGATTGTTAGTAAAACCTATCCACTTT 27152 28 100.0 32 ............................ CATAAGCGGGACTAACCCGCCATTAATCAAGA 27092 28 100.0 32 ............................ TGTTGAGCAGATGCCAACTCGGGTAGTGTCCA 27032 28 100.0 32 ............................ GGTCTCGATGTGCTGGTGGGTATCCCGGCTGA 26972 28 100.0 31 ............................ TCACGTCATTTGTACCAATTTACTGACAACA 26913 28 100.0 32 ............................ ATTAGCGCAGATAACCCCAACTCGGAAGCTCT G [26912] 26852 28 100.0 32 ............................ TCCTATTTTTAAATAAATCATACACCTATGCA 26792 28 100.0 32 ............................ GTTGATAGCTGGCGAGATAGCAGCGGTAAGCT 26732 28 100.0 32 ............................ TGTCGTGTTTCATGTAGTAATCTATTGCAACT 26672 28 100.0 32 ............................ ATCAGGAGTACGCAAGAGCCGGACACAGATAA 26612 28 100.0 32 ............................ ACCTATGTGTTCTGCCGACTCTTTAACGTCCA 26552 28 100.0 32 ............................ AATTAGCGAACAACGTAACATTGTTGATTCTG 26492 28 96.4 32 ...........C................ ACTCCACATCCGGCGCTTGATTCACATCTACA 26432 28 82.1 0 .....................AGC.C.C | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGCGCTGAATGACTTACAAGCATTACCGTGGTTAAAAGGGCTCAGGGATTATACTGAGGTGATTGATATCCAGCCAATTCCCCAAGAAACTAAGTACCGCTGTGTCAGCCGAGTGCAGGTTAAAAGCAGTGCGGAACGACTTCGTCGTCGTGCTATTAAAAAGGGATGGTTAACGGGGGAACAAGCTCGGCAGCGTATTCCTATCAGCAAAGAACAACGTACTCATTTACCGTTCTTGTTTCTCAAAAGTTTGTCATCAGGTCAAAGTTTTCTGTTGTTTGTCAAACAAGGGCCAATACAAGACAAACCGACGTCAGGAATTTTTAGCTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : TTGATTGAGTGCGCTAAAAAAGCAACCTTTTTTCTTCTCGATATGCATCAATTGTTGTGCTTTTGTGCATATTCTTCACTATTAACCCATTGGTGGTCTTTTTCCCAGGTAAATAGCCATTTACGAGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGGTAGCCTTTGGGCACCATTACCACATCTTTATTGTGAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACACGTTGCATGCAGAACCCTTGAGAAGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGTGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAGCTGGTGCAGCCTTCATCGGTAAAGACTTCAACCACCAACAAGCTATCAGCAGGTTTATTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAACCATTGCCACGTTGTTCTGCATCAATATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 70426-69918 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFH01000002.1 Photorhabdus laumondii subsp. laumondii strain TT01-23 TT01_23_scf0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 70425 28 100.0 32 ............................ TTTATTGGCGGTTCTCGTGTTGTCTGAAATCA 70365 28 100.0 32 ............................ ACAAAGCAGACGAGCGCAGCGGGAAGCGGTGC 70305 28 100.0 32 ............................ AATGGCCGGTCAATTAGCTGGAGGAGTAGTGG 70245 28 100.0 32 ............................ AACCTGATAATCCGAGCCGACATCACCCCACC 70185 28 100.0 32 ............................ ACATAGCTAAGCACTTGCAATTACTTGGTTGG 70125 28 100.0 32 ............................ CGGAGTCATAACTGTAGGTTTCCACCCTAGTA 70065 28 100.0 32 ............................ AACGTGAGATGCAGTTGGAAATGAGAGCCTCA 70005 28 100.0 32 ............................ ATATGATTTGACTATCTATATTACGCGCCATT 69945 28 92.9 0 ....................T...A... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAATCATTTTTTATCTGTAATGTTTATATTTGCTCTCATAATAACATGTAATATAGATTATATCTTTAATTAAGCTAATTATATTTCTGAAAATATGAATTGGATACTTGTTAAATTGGGTAATACTGAATTTTTCAATATTTAAGTACATGGTGAAATTAATGAAACTGTTGGAATATTGGATGATGTCACTATTGAAAGGGGCTGTGAGATTAAGAGGTACTGATTTTTGTTGATGACCGAATTCAGTGAATAGTTCCAGTATCATTGAACATTTTACAGGCAACAATTCTCACTTACTGCATAGATCTTAGGCTTAGAACAGATGACTTAAGTATGTGATGGTATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAAGGGAGTTGTAATTTATTGATTTTATGGATAAATTAATTATCTCTTATAAAAAGGGTTTTTCACTTTTTAGTAGTTATACTATTTAAAAATCAGCAGGTTAAAGTTAATATGTAACA # Right flank : TAGAAAATTATCCTCTTCTCTTAAATTATCGAGCATGCTGCCACATAGGTAGTTTAGAGCATAATCATTCCTGTTTAGGGAAGGCACTATTCTGTGAGTTAGTAAAGAATTGTAAAAATTTTTAATTTACATCTGTAATGTTTTACTTATGTGAAATTTATACATAGTATTTACCATAAGTTAAATTAATTAGTTAGGTAATTCTACATTATGGATAACAACTTTTCTCCGAGTGACCTTAAAACTATTTTGCATTCCAAACGCTCGAATATTTATTACCTGCAATATTGTCGAGTATTAGTTAATGGTGGCCGCGTTGAGTATGTCACTGATGAGGGAAAGCAATCCCTGTATTGGAATATCCCAATTGCAAATACCACCGTTATTATGTTGGGAACGGGTACTTCTATTACTCAGGCAGCAATGCGTGAATTTGCTAAGGCGGGTGTTTTAGTTGGTTTTTGTGGAGGTGGAGGTACACCGCTATTTGCGGCTAATGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 25881-25433 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFH01000034.1 Photorhabdus laumondii subsp. laumondii strain TT01-23 TT01_23_scf0034, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 25880 28 100.0 32 ............................ ACAGCCGGAAAATTAATGGCAAAGCATTAAGT 25820 28 100.0 32 ............................ CGTAATTTCCTGCTTATCATTACTCTTTAAAG 25760 28 100.0 32 ............................ TACGTTTGCACTCTTCTATATAGTGAGGGTTA 25700 28 100.0 32 ............................ CGTAATTTCCTGCTTATCATTACTCTTTAAAG 25640 28 100.0 32 ............................ TACGTTTGCACTCTTCTATATAGTGAGGGTTA 25580 28 100.0 32 ............................ AACTTCTCCCGCACACAAAGGGAGAGTGGGCG 25520 28 100.0 32 ............................ TAGAAATCCTTGAATATAGTCAGACCCGTAAT 25460 28 92.9 0 .C..................A....... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.1 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGACGAGGTATTGATAGTGGCCGTAGAATTTTAACGCATCAGGGGGATGCTATCCGAAATATTCAGGGTTCGTTCGCCGGCATGATAGCACTAAATTATCATTTGGCAACAAGAGGGGCTTTTTATGCTAGTCAAGTTCTTGGAATAGCGACAGATGGCAGTTTCAAATCGATAAATATTTCTGACACAGATACTCCATACGGCTTTGGGTTCGAGGCGTCAAGGGTTGTTCCTGTAGCCTCAGAGAACCGCCCTCGCAACATAGCATTTAATTACATAGTGAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCTAGAAATAGAAGAAGAGACTGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGCAAATTTTAATTTATTGATTTTTAAGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATCATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACAA # Right flank : AGAGGATTAATTGAGCGCTTTTAGTGAATATTTATTCATTGCACCACAGCGATGTTAGGAAAGCATGTTAGGAAGGGGAGGGGCCGGCATAAAAAAAGCCACCTTGCGGTGGCCTTTTCTTTTTTCTAACTCACTGTTTTATCAGCGAATTTCATTTGGTGCCCAGGGCGGGACTTGAACCCGCACAGCCTTACAGCCGAGGGATTTTAAAAACCATCACAGCATTTTAAGAAACAATAAGTTAAGTTAAATCAGTTGGTTATATTTTATATATGTGCATTGATGTAGAGCTATATATGATGTTGTCGCCACTTGAAATTAGTCATCTTCAATCTGATCGTAAGGGTTGAGAGTTAGCGCCAAATCAAGATGCTCTGGAGCAAAGTGCGCATAGCGCATTGTCATATTTATAGTGCTGTGACCTAATATTTGTTGTAGTACTAAAATATTGCCGCCGCGGGTCATAAAATGTGATGCAAATGTATGACGGAGCACATGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 29262-28813 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFH01000034.1 Photorhabdus laumondii subsp. laumondii strain TT01-23 TT01_23_scf0034, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29261 28 100.0 32 ............................ TCTTGAGTGTAGGTTAGGATAAAAATAACCAA 29201 28 100.0 32 ............................ ATATTCGTTCAGCTGCAAACACAGTAAGTGAA 29141 28 100.0 32 ............................ TCAGTGGTTTCACCATAAATCTTGATTGGCGC 29081 28 100.0 32 ............................ ATACAACTAACATAGCGAGATAATCATGACAG 29021 28 100.0 33 ............................ ACGCATCAACTGGCCGAAAAAGTCAGTTCCCAG 28960 28 100.0 32 ............................ ATAGTGTAGATGGGCCATGCCTGCGTCCATGT 28900 28 100.0 32 ............................ ACCTTTTAGTTATGAGGGTGTGCGTTTTTATT 28840 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTGATAGCGGCCGTGGAATTTTAACTCATCAAGGGGATGCCATTAGAAATATTGTAGGTTCATTTCCTGGGGCAATAGCACTTCATTTTGAGCTGGCAGCAAAAGGGGTTTTTTACGGTAACGCAACTTTTGGCGTGGCTACAGATGGTAATCCTAAATCAGTAGATCATTTTACCCGGGATGCTGTATACACTACATACGGTTTTGGGTTCGACACGTCAAGGGTTGTTCCTGTAGCTTCGGAGAACCGTCCTCGCAACATCGCCTTTAATTACATAGTAAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCCGGAAATAGAAAGAGAGACGGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGTAAATTTTAATCTGTTGATTTTTCGGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATAATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACA # Right flank : ACCAACATTTTCACTTACCAATCTATTTTCAGAACTGTCGGCTCAAGTGTATCGTTGAGAACAATGAATGTGTGTTTTATGAAGATAGAGAGCCTATGACATTCCAGAACACCGTCGCTTAGATATTCGTGTCCAAATGCCAGAAGATTCATCTTGGAATTTAAAATAGCAGGCGTTACAGGAAGAGATAGAAGGAATAAGAGCAGAATAGTTTTCAGATGTTAAATATAAATGGTTTGGGTATGTTTTCGATTCTAAAATATTTAATTACTTATTACTGCTAATTATATAAAAATAGTCAATCTCCTAATAAATAGGAATGCTGTATTACTCTTCTTTCTGAACTAGACTTTGATTTTAATGAATTACAGACGGATTATTTTTACAGTAATTAAATATGTTGATTATAAAAAATATTATTTTGCTTAAGGAGTAAGGATATGAGTCAAAAAAATGATTTTAAAGCTTTTTCTATTAGCGATAATGCTAATGTAATTAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //