Array 1 660-449 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNVJ01000024.1 Thauera chlorobenzoica strain 3CB-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 659 28 100.0 33 ............................ CGGATGTGTTCGTTCGCGCAGGGCCGCCATCCG 598 28 100.0 33 ............................ TCAAACATGCCGCCGAGCAGGTCGCGCTCTGTG 537 28 100.0 33 ............................ TCCACCGAGGGGACGAGGTTCATCTTGATCACC 476 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTCTTCCCCACGTCCGTGGGGGTGTTTC # Left flank : ACGGTGACGTCTTCCCCACGTCCGTGGGGGTGTTTCCAAGCACCACAGTACAGCGCCGGAATTCGGCACGTCTTCCCCACGTCCGTGGGGGTGTTTCCGGGTTGAGTGCGGTGACGTTGCTCATGGTGTCGTCTTCCCCACGTCCGTGGGGGTGTTTCCGCGCCCTCTTCGCCCTGCCAGTCGGCGGCAAGGTCTTCCCCACGTCCGTGGGGGTGTTTCCGTCTGGCGCCGATCGGGCGGCCCGGAGATGCCGTCTTCCCCACGTCCGTGGGGGTGTTTCTGACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG # Right flank : CCGACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTTCCCCACGTCCGTGGGGGTGTTTCCCCATAAAGTGCTTTACACACGCGCCAAATGAGGTCTTCCCCACGTCCGTGGGGGTGTTTCCAAGGTAAGCGGTAACTGCCCGGCGTCCTTGCCTACTTCGAGATTTCGAAGAGATCGGATCGCAGCGGATTGGCCGCGAAGTGTTGCTTCCACAGCCTTGGGGTGAGCTGCGCCACGTTGGCGGCCGGAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGTCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1457-941 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNVJ01000024.1 Thauera chlorobenzoica strain 3CB-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1456 28 100.0 33 ............................ CACGACAAGCGGCGTTTGCATGATGGGCTGCTG 1395 28 100.0 33 ............................ GAGGTCACGAACCGGGGGACGCTCTCGAAGTCC 1334 28 100.0 33 ............................ CCCGTCAGTCAAGCGGACGCGATGGAGCCGCGC 1273 28 100.0 33 ............................ CTGCGCCGCCTGGCCGGGCTGGGCCAGATCGAG 1212 28 100.0 33 ............................ CGACACGCCGCTCCCAATCAACGCGACGGTGAC 1151 28 100.0 33 ............................ CAAGCACCACAGTACAGCGCCGGAATTCGGCAC 1090 28 100.0 33 ............................ CGGGTTGAGTGCGGTGACGTTGCTCATGGTGTC 1029 28 100.0 33 ............................ CGCGCCCTCTTCGCCCTGCCAGTCGGCGGCAAG 968 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 33 GTCTTCCCCACGTCCGTGGGGGTGTTTC # Left flank : CAGTGACTTGGCGTCTTCCCCACGTCCGTGGGGGTGTTTCTGGACTACATCGTGCCCGGACTGGGCGGATCGGGTCTTCCCCACGTCCGTGGGGGTGTTTCCACATCACGAAGCCGAGCAAGCAGTGACTTGGCGTCTTCCCCACGTCCGTGGGGGTGTTTCTGGACTACATCGTGCCCGGACTGGGCGGATCGGGTCTTCCCCACGTCCGTGGGGGTGTTTCCTACACGCTCAACGCCAAGGGCGGCTCGATCGAGTCTTCCCCACGTCCGTGGGGGTGTTTCCTTTTTCGACACAAGTAGGTTACTGTTCCGGCGGTCTTCCCCACGTCCGTGGGGGTGTTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CGTCTGGCGCCGATCGGGCGGCCCGGAGATGCCGTCTTCCCCACGTCCGTGGGGGTGTTTCTGACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCTTCCCCACGTCCGTGGGGGTGTTTCCGGATGTGTTCGTTCGCGCAGGGCCGCCATCCGGTCTTCCCCACGTCCGTGGGGGTGTTTCTCAAACATGCCGCCGAGCAGGTCGCGCTCTGTGGTCTTCCCCACGTCCGTGGGGGTGTTTCTCCACCGAGGGGACGAGGTTCATCTTGATCACCGTCTTCCCCACGTCCGTGGGGGTGTTTCCGACCNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGTCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 3 2433-1612 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNVJ01000024.1 Thauera chlorobenzoica strain 3CB-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2432 28 100.0 33 ............................ TCGAAGCTGCGGCGACTCCGATCGCTGCCATCG 2371 28 100.0 33 ............................ CGATTGATCCGCTCGGCGCTGTGGTTTGCGGTC 2310 28 100.0 33 ............................ CGTCTTGTCGCCGCCGACCGGTAGCGCCCAGGT 2249 28 100.0 33 ............................ CTTGAGATCCTGCTTCAGCTGGCGGATGCGCTC 2188 28 100.0 33 ............................ TCCCGATTGACCGCCAGCACGTCGGCGAAGAGA 2127 28 100.0 33 ............................ CGAAGTCATGTATCCATTCGGCTTGCGGTGCAG 2066 28 100.0 33 ............................ TACCTCTCCAGCGTCAGCGGTGCCGCTCTTCAG 2005 28 100.0 33 ............................ CACATCACGAAGCCGAGCAAGCAGTGACTTGGC 1944 28 100.0 33 ............................ TGGACTACATCGTGCCCGGACTGGGCGGATCGG 1883 28 100.0 33 ............................ CACATCACGAAGCCGAGCAAGCAGTGACTTGGC 1822 28 100.0 33 ............................ TGGACTACATCGTGCCCGGACTGGGCGGATCGG 1761 28 100.0 33 ............................ CTACACGCTCAACGCCAAGGGCGGCTCGATCGA 1700 28 100.0 33 ............................ CTTTTTCGACACAAGTAGGTTACTGTTCCGGCG 1639 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 33 GTCTTCCCCACGTCCGTGGGGGTGTTTC # Left flank : TGTACAAGGAGACATTGTGTATCGATCTGGCCTTTTCGCTCACCCGGGACCTGGCCGGCCGCTACGACAAGCACAAAGTATCGGCAGCGTTCCGTCAGCGGGTGATCGAAACGGAGCTGCTGGCCAGGGTCGGAGAAGACATCCAGGACATGTTCGGAGTGAGCCATGCTTGTCGTCGTCGCAAATGACCTGCCGCCCGCCGTGCGAGGAAGGATGAAGCTTTGGTTCATCGAGCCGCGGCCCAATGTGTTCGTCTCCGGAGTCAAGGACTCGGTGGCCACCACGGTCATCGAGTACCTGTACAAGCATTGCCCGCCCGAGTCGGGGCTGGTGATGTTCCGCTCCCTGCCACGGCCTCCCGGCTACGAGATCAGAACCATAGGCCCGCCCCGAAAGCCGATGACGAGTATCTCGGGTCTGCAACTGGTTATGGAAACCCTTGCATCGGCGTAATTGGCATATCTTGTATCTGCAGCCGGGCTCATTAACAATCTGTTGGT # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTTCCCCACGTCCGTGGGGGTGTTTCCACGACAAGCGGCGTTTGCATGATGGGCTGCTGGTCTTCCCCACGTCCGTGGGGGTGTTTCGAGGTCACGAACCGGGGGACGCTCTCGAAGTCCGTCTTCCCCACGTCCGTGGGGGTGTTTCCCCGTCAGTCAAGCGGACGCGATGGAGCCGCGCGTCTTCCCCACGTCCGTGGGGGTGTTTCCTGCGCCGCCTGGCCGGGCTGGGCCAGATCGAGGTCTTCCCCACGTCCGTGGGGGTGTTTCCGACACGCCGCTCCCAATCAACGCGACGGTGACGTCTTCCCCACGTCCGTGGGGGTGTTTCCAAGCACCACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGTCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43438-42488 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNVJ01000022.1 Thauera chlorobenzoica strain 3CB-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================== ================== 43437 28 100.0 42 ............................ CATCATGACCACCACCACCACCACCACCACCACCACCACCAC 43367 28 100.0 33 ............................ CGATGACGCTCATCGCCACGGTCCCCGGATGTC 43306 28 100.0 33 ............................ TGCTTACGTCAGCTACATCCCGTTTGACATCCG 43245 28 100.0 33 ............................ GAACAAGCGCGGGCTGGCTGTGCTCGTCATCGA 43184 28 100.0 33 ............................ TGAACGTCACGAACCGCATCACGCACGACTGCC 43123 28 100.0 33 ............................ TCTCCTGCGTGGTGATCGTGCTGACCAGCTGGC 43062 28 100.0 33 ............................ CACTGGCAAACGCGCCATTGTGGCGCGGTGAAG 43001 28 100.0 33 ............................ TCCTTCCGCCCGAAGGCAGCGCTGGCATCCGCC 42940 28 100.0 33 ............................ TCATCAAAACCGCCGCACCCCAAAAGACCGCAT 42879 28 100.0 33 ............................ TGTCGTAGCCCTGCCCTTCCATGTCATCGGCGG 42818 28 100.0 33 ............................ CCGCCCACGACAGATTCACGGTTATACCAGCAG 42757 28 100.0 33 ............................ CGATGCGTTGCGGCATCGGCCAGGACAGATAGA 42696 28 100.0 33 ............................ CGACCGGCTCGGCGCCACCTCGCGCAGCGCCTA 42635 28 100.0 33 ............................ TAGGCCCGCGCTTGTCGGCTTGCTCTGGTGAAT 42574 28 100.0 33 ............................ CAAGCGCGCGATTGCCAATCTGTGCGGGTGCTC 42513 26 85.7 0 ..........A-....-..T........ | ========== ====== ====== ====== ============================ ========================================== ================== 16 28 99.1 34 GTCTTCCCCACGTCCGTGGGGGTGTTTC # Left flank : CAGCCTGAACGCCGCGCGGGCGGTCGGCACCTACGACCGAAAGCTGCAGCAACTGGCCCGCGTTCCGGTGCTCATCATCGACGACTTCGGCCTCAAGCCCCTGCGCGCGCCCGCCGACGAGGATCTGCACGATCTCATCGCCGAGCGCTACGAGCGCGCCGCCACCATCGTCACCAGCAACCTCGACTTCACCGAGTGGGACCAGGCGTTCCCGGGCAACCGGCTGCTGGCTTCGGCCACCGTCGATCGACTGCGCCACAACGCCTACTGCCTCACCCTCGACGGCGCCTCCTACCGCGCGCCGCGGCAGGGGCCAGGCCGGGCGAAAAACGCTCTTGCCGGCACCCCGAAGAACATCCATTCTTGACCCCCCCAACGACGTCCGTCAGAGCCCCATTCACGTGGCTTCTATATGCCGATCATCGGTGGCCCTATTGTGCCGGTCAGTGACACCGTGGGGGTGTTTCTACTTACCCGATGCGCTACCAGATGTTTAGCTC # Right flank : TACGGCGGAGTTCGAGCTTACCTCGGAGGACGGTTCCGATGCGAGCTAGGGGTTGGCGTTTTTCAACTTCAGCGCCCGAAATTCGGCACTTTGTGAATGAATTTCGAGTGTCGTGAAGATTTTTCGAGTCCAGCGGGCGAGGGGGCGGATACGAACATCGGGTTGCCAGGATCGGTCTTGTCCGCACGGATGAGATTGAGCACAGCCTTCTTGAGCAGCGAGAGGTTCTGCGGTGCGTTGTCCTTGCGGATCATGCAGTCGTTGTCAATGTCGATTTAAAGCTGCACGACGCCGCTCGCCTGCGCCTTCTCGTCGCTATAGGCCCGTACCCGCCCCGCGCGGCTTGCCGTACCAGCGGAAGCGCTCGGTCACCTCGGCCATTTCCGCCGCCGACAGCAGTACCGGGCTGCCGAGCTGGAGGGTGCGCCAGTACTGCTCGCACAGGGTTTCGAATTCGATCGCCAGCGCCAGCGCATGGGTCAGGTCGCGGCCGAACACGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGTCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 47395-46146 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNVJ01000022.1 Thauera chlorobenzoica strain 3CB-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 47394 28 100.0 33 ............................ CCCCCAGTCGTTACCTGCCGGTTCGCTCTTCAT 47333 28 100.0 33 ............................ GTTACCTGGGCGCACTATGTCAAATAAGAATCG 47272 28 100.0 33 ............................ CGAGGCGACTATCGTGGCCCTTGCCCTTCCGGG 47211 28 100.0 33 ............................ CGGGATGCTGGATCGTGATCGAGCCACAAGGCG 47150 28 100.0 33 ............................ CCCTAGCCCCGCTCTTTCGCCAGCAATGGCGCT 47089 28 100.0 33 ............................ CGACATGCGCACGCCACGGCACCATGCGCCGTA 47028 28 100.0 33 ............................ CGACATGCGCACGCCACGGCACCATGCGCCGTA 46967 28 100.0 33 ............................ CGCGTTCTGATCGTGTGACGTTGAATAGCGGTC 46906 28 100.0 33 ............................ TACCGAGTTCTGGGTGCGCTTCGAGGGCCTCAA 46845 28 100.0 33 ............................ CCATGACGCCCGCCGACCCTATCGCGGAACTGG 46784 28 100.0 33 ............................ TTCCCATCTCGTGCTGAAGAGCTGCCGTGATGA 46723 28 100.0 34 ............................ CGCGCTTCGCCGGCAAGGCTACTCGGTCGATTGG 46661 28 100.0 33 ............................ CAAAAGCGCCTCGCCACCGACTTCATCGACCGC 46600 28 100.0 33 ............................ CGAAGTTATCGACCTCCCCGCCCAAACCGGCAC 46539 28 100.0 33 ............................ CGCCGCCTGCGCCGCCTGTACGAATCCGTTGAA 46478 28 100.0 33 ............................ GCCGGTGGTGGCGGATGGGGCGGCCTTCCCTGT 46417 28 100.0 33 ............................ CGCCGCCTGCGCCGCCTGTACGAATCCGTTGAA 46356 28 100.0 33 ............................ GCCGGTGGTGGCGGATGGGGCGGCCTTCCCTGT 46295 28 100.0 33 ............................ CGGTAAGTAGCTGGGCTGTTTGCATCGGCGGAA 46234 28 100.0 33 ............................ CCTCGTCCCAGTCCCAGGTCAGGTGCTCTTCGA 46173 28 71.4 0 ..................T.TCACCGA. | ========== ====== ====== ====== ============================ ================================== ================== 21 28 98.6 33 GTCTTCCCCACGTCCGTGGGGGTGTTTC # Left flank : CACCGCCGCCAACGTCGACCAGGCCCGCATCGACAAAGCCCGCACGAGCGCACGCATCGCCGCGATCGGCGACGCTCGACGCCTCACCGGCCAGCAGGCCGCGCCAGCGCTCGAAACTCGACTTGCTCAAGCCCTCGCTGTCGCAGAACTGCCGGATGCTCAGACCGCTTGCCGCAAAGCGATCGAACACCGCCCGCCATTCCTCGTGGCCGCGTCGCCGCCATTTGCTCCTCACCGTCGATGCCATCACTGCCAATCCCGTCGTCGTTGAACATGGCGAGAATTATTCAACGATCGCTACGCCGCGAGAAGGACGCCGCTCAGTTACCGGTTACTTTCCAAGGGCGCGAATCCGGCGAAAAGCTGCGATC # Right flank : CGGCACATTGGAGCCAGTTGGTGATCGGCACAATAGGGCCACCGTGTGATCGGCACATTGAGGCCACCTCCGGATCGGCACATTGGAGCCAGCGCCGGATCGGCATAATGAGGCCAGTTTTGTTCTGACGGACGTCTCGAACTTGAGCGCGCCATGGCTACCCTTCAGCCTTTTTGTTCGGCAGGAGGGAGGCGATGGCCCGCAGGAGCATCGAGATGTACGAGTACCGCCAGGCCCTGATGCGCATGCGCCAGGGCGACTCCGAGCGCGAGATCGCGCGCTCGAAACTGATGGGTCGCACCAAGGCGGCCCGGTTCCGGGCGTTGGCCCAGCTTCAGGGCTGGCTCGACCCCGAGCGCCCCCTGCCCGAGGACGCCGAGATCGCCGCTGCGCTCGGGCAACCGAAGCTGCCGGCGACGGCCCGGTCTTCGATTGCCGTGTACCGGCCGCTGGTCGAGCAGTGGCACGCGCAGGGGGTGTCCGGCGTGGTGATCCACGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGTCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //