Array 1 78418-77610 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJYH01000017.1 Acinetobacter sp. RIT698 17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 78417 28 100.0 32 ............................ TGTTTTAGACGTTTAATACGTTGTCTAATTCC 78357 28 100.0 32 ............................ ATATAAGACAATAATTGACGTTCAAAGTCTTG 78297 28 100.0 32 ............................ ATTAATGAATCAAAAACTTTTAAGTTGTCATC 78237 28 100.0 32 ............................ GAACTGATGAAATAAAACTTAAAAACCTCCTC 78177 28 100.0 32 ............................ TAATGGCTGATAAAAAAGAACCTAGTGATATT 78117 28 100.0 32 ............................ GTTGGCATTGACTGAATCTGCAACAGCATTTA 78057 28 100.0 32 ............................ CGTGTCTGCGTCTTAATCAGACCACGTGAGCT 77997 28 100.0 32 ............................ ATTTTGCATAACGTTTAAAGATGTACGTTCAT 77937 28 100.0 32 ............................ ATGGGAAGACTTTCTTGCTGTGATGTAAAAGG 77877 28 100.0 32 ............................ TAAGTCGTCATCGGTGTCGATCAACTGCGACT 77817 28 100.0 32 ............................ TAAAGCGTAAAGGAAGTATTTAGGAACTCTTT 77757 28 100.0 32 ............................ TGAGAGTACTGCTTGTACTATGTTAATGCCTG 77697 28 100.0 32 ............................ TGAAACTGTCATTGATGAAAATGGTAAAGAAA 77637 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.7 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : GATAAAAGCGCTACTCCTACGATGCAAAAACCACATACGATTGTAAATCTAGCAAGCAATTATCAAGTGAATGATAAGCTCACTGTACGTGGTGGCTTTACTAATTTACTTGATAAAAAATTGTCAAATGGTGCAGACGCATACTTCGTTGAGCGTCAAAAAGTATTTGTAGGCGCAACCTTTAAATTTTAATCAATCATACTGAAGTGAAAACTCACTTCAGTAATAAATCATGCGTTATGAAAACCATCTGCGGATGGTTTTTTGCTATGTATTTTTTATTTGGATGGATGGAATGCTGTGTATGAAATAGTGAAAACAATGATTTTTTTAGGGTTTAGGTATTCTTCTATTCGTACCAAAATTTCCCCCAATATTTTTTGATCATTTTATAGTTTAATAAAATCAGTTGGTTATATATGTTTTAAAAAACTTTGGGTATTTTATGGTTTTTATATTTAACTTGCTGTTATCAGAGTGTTTTTTGATTTAAAATTATA # Right flank : TCAACGGAAGAACTAGATGAGATTTACTGCTAGACCAGCAGAGGCGTTTATTTTAGTTATCTTGATAATATTTGAATTTGTAGAGAAAGCTACCTTAACGGTAACTTTCTCTACATCTAACTCATTGGTTTATTTTAAGCTAAATCAATGTTTAGCTTATTATAAATAGGTTTCAGAATTACCAATCGTATTTTAACCCCACTCTAAAATTAGTTGGTGCACCGTAGTAACTATTCGTTGTGGCTAAATGATATTTTTCATTAAACAAGTTATTGATATTTAAATTCAGCAATAAATTTTTATTGATTTTATAACGTGCCATTAAATCAACCAAAGTATAGCTGTCTTGGGTAAAACGAGTCTTTACAGGGAGCGTTATATCAGAATAAATATCACTTTGCCAACGTAGGCCACCACCTATTGTTAGAGCTTGATCAAAGTAAGGTAGAGTATAGGTACTAAATAATTTAGCAGTATTATTTGGAATGTTGGTGTTTATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5415-1484 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJYH01000078.1 Acinetobacter sp. RIT698 78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5414 28 100.0 32 ............................ ATATTGCTATTACCCATTGTAATTACCTCTTA 5354 28 100.0 32 ............................ AATAAACAATTTTCTTAGCAAAAATTGGTTTT 5294 28 100.0 32 ............................ GAAATGGCCGTGTAAAAGTAAAGCTCGACCAA 5234 28 100.0 32 ............................ AAAACAAAACAAAGTTACGGCAGTCGGTTTTG 5174 28 100.0 32 ............................ TTTTATGTTTTTATAGGTTCAGGGAATGTTGA 5114 28 100.0 32 ............................ GCTTACTTCAGGAATGTTTCACTTAACAAATG 5054 28 100.0 32 ............................ AATAGCTTTTATATTTTTAGTCGGATTTAGAA 4994 28 100.0 32 ............................ ATTCTGAAAAAGTTTACAATTTGTACCTTCGA 4934 28 100.0 32 ............................ AATAAGTGATGAAGAGGGATTGGCTTGTGAGT 4874 28 100.0 32 ............................ GTACGGCGTGAGCGACGCACTAGGTCGCAACA 4814 28 100.0 32 ............................ TTTTGACCATGCTTTGCTCTAAAACCTGATGT 4754 28 100.0 32 ............................ TAAAGTGGTACTAAAAAATGCTTTAACATAAT 4694 28 100.0 32 ............................ TTTCTTTCTTCACTTGTAATAATAAAATCAAA 4634 28 100.0 32 ............................ TGTTATTTCATGTTTGTTTTATTTGAAAGGCT 4574 28 100.0 32 ............................ GTTAATAGATTTAATGCGTCCACTTATTGCCT 4514 28 100.0 32 ............................ ATTCTTAAACATGATAGAAGAACAGACAAATG 4454 28 100.0 32 ............................ AAATATGAAGAAATACCAAACGATGTAGTTCA 4394 28 100.0 32 ............................ AGTTCGCGCCTACGGACGCTCTGTTTCTACTG 4334 28 100.0 32 ............................ AATTGACTGTTTTAGTAACTCTTTATTTGAAG 4274 28 100.0 32 ............................ ATCACAACAGATGGATATTTTAATGGCTCGTA 4214 28 100.0 32 ............................ TACATTATTGAGCGTGGGCATGATGGAAAGCC 4154 28 100.0 32 ............................ AATTTCACCGGGTAAACTTGTGATCATGGTTA 4094 28 100.0 32 ............................ TTATCTTTCGGCGCGTAATTCTTTTTGTACTC 4034 28 100.0 32 ............................ TTCGACTTGATATGTAAATGAAGATGAAACAC 3974 28 100.0 32 ............................ TGTTGAGTAGCTTGTTGATTATTTTGCGTAGG 3914 28 100.0 32 ............................ GTCAATTTATGCTGACTCAGCTAAAAATACTG 3854 28 100.0 32 ............................ AATACGTTTTGTTCTCATCGTCTTTATCCGTT 3794 28 100.0 32 ............................ GGCACGCAGATACCGTTTTTTGTGTCAAGAAA 3734 28 100.0 32 ............................ TTTGGTACACAAGGAGAAGCGCAAATGATTAA 3674 28 100.0 32 ............................ GTTTACGATTTCTTCTATTTGAAATGGAAATG 3614 28 100.0 32 ............................ ATTCACTAAGTGAAATAGATTCTTTATCACCA 3554 28 100.0 32 ............................ TGGCAATGCTGGATTCACGTTGTAATTTTTAA 3494 28 100.0 32 ............................ ATACTTTCTTGAGGATGAGCGAATTTGTGTTG 3434 28 100.0 32 ............................ TATCAATCAAGCTGTTGAGCGACTAGAGGATA 3374 28 100.0 32 ............................ AAGAGGTTGAGATCCGATTCATTGGTTTGATC 3314 28 100.0 32 ............................ ACTCAAGCATTTCTATATCAATCCTCTGAACT 3254 28 100.0 32 ............................ ATGTGCTGATCTGCGTAATACAATTCGAACTG 3194 28 100.0 32 ............................ TGTTACGCTACAGCACAAGAAACACACGAAAT 3134 28 100.0 32 ............................ TATCACTATCGAATTAAGTGCAAATGGTAATG 3074 28 100.0 32 ............................ ATTAGTATAGACCTTTTAAAAATTCTCTAAAA 3014 28 100.0 32 ............................ CAACTAATATTAAAATCAGTCGGTTTCTTATT 2954 28 100.0 32 ............................ TGAGTTGCTGGTATTTATTCCTGAAGCCAGTC 2894 28 100.0 32 ............................ TAAACAGTTGGCTACACCTTCGGCTCATCAAC 2834 28 100.0 32 ............................ AAGTAACCCCCCAACATTCGGTATAGTCATCG 2774 28 100.0 32 ............................ TCAACGACTCGCATCGCAGATTTATTATTAAA 2714 28 100.0 32 ............................ TAATGCCCACAAGACCTTTGCCCATCTCAGAC 2654 28 100.0 32 ............................ TTTTCGAGCTAAAGCACAACCAGAACCATTAA 2594 28 100.0 32 ............................ TTAAATTGTGGGTGACTCCCCGACCAATGGAA 2534 28 100.0 32 ............................ ATTCGCATCAAAAAGTTTCCGACCATATGTAT 2474 28 100.0 32 ............................ ATGTGTGACTGGTACGTAAAATATAAAGAAGA 2414 28 100.0 33 ............................ AGTTGCAAATTTCTGTAGTTCAGGACATGACAT 2353 28 96.4 33 ..........G................. ATTGTAAACATGCCCTTACCGCTTGTTGTTGCC 2292 28 89.3 32 ..........GAG............... CACAGCAACAGGATTAACAAAAGTTAAAACCA 2232 28 89.3 32 ..........GAG............... TATAATAAGAATTGCTAACCGTTAAATTATTT 2172 28 100.0 32 ............................ TCTTGATGTACCTTTCCCGACTATCGAGCGAC 2112 28 100.0 32 ............................ ATCTTATCGGAGAATACATAAATGCCAGCCGT 2052 28 100.0 32 ............................ TGCAATCTCACCATCACGACGATTAGAGAAAT 1992 28 100.0 32 ............................ AACATAAAAACACAAGGCTGCACGAGGGTCTA 1932 28 100.0 32 ............................ CATTACAACCCCCAATCATTTAGAATCTAAAT 1872 28 100.0 32 ............................ ACCCAGTAATATGTGAAAGTGGATCAACAGCA 1812 28 100.0 32 ............................ AGAAGCAAAACAAGCTTTTGATGGGATGGGTG 1752 28 96.4 32 .................T.......... TTCGGGATAGCTTGACGGGGCAAAGTCTAACG 1692 28 89.3 32 ..........GAG............... GTCAATTTTTGTTCCTTGCTGATCATAAGCTG 1632 28 96.4 33 ..........G................. TGAATATATTTGCTATGAAGTTTTGAATAATCT 1571 27 96.4 33 ................-........... AACTATGAGCGTTCTCATCGTATTGATTTACCA 1511 28 92.9 0 ..........G.............T... | ========== ====== ====== ====== ============================ ================================= ================== 66 28 99.2 32 GTTCACTGCCACATAGGCAGCTTAGAAA # Left flank : GATATACCAAAGTGGCTTGAGCGTTTGGTTGATTATATTCATATCAGTTCTATTAAAGAAGTGCCTGAAAGTAAAATTACTGGTTATGCAATTTATAAACGTAAACAAGTTAAAACCAACGCTGAGCGTTTGGCACGCCATCGAATGAAAAGAGGGGATATAGGCTTTGACGAAGCATTGAATCGTTATCGCCAAGTGGTGACAACAACTGATTTGCCTTATGTACAGATGCTAAGTTTAAGTACATCGGATGAACAAGATAAAAAGCGTTTTAAGCTATTTATAGAAAAGCAAATCACTGAAAAATCTGAAATTCAGGTTTTTAGTACATATGGGTTAAGTTCTGTGTCTACAGTACCTGAGTTTTAACCCAATATTTTTTCACTCTTTAACAGTTTAATAAAATCAATAAGTTATGATTGTGGGTTAAAACTTTGGTCTTTTATAGGTTTTTAGTCTTAACTCACTGTTATAACTTTATTTTTTGTTTTAAAATTATA # Right flank : TTATTTCTTGTGTAACAAGTAATGTTGTTAATGTTTTGAATTGCAAGTTCGTTAGAAATAATTTTTAAAAATAACTCTAGGGTTATTTATTTAGAGCAACTCAGAGGTTATATTTTATTCTTCGAAACTTCATTTTCTCCAAAAGAGGTGAGTATGTTATATCCAATTGCAGTAGAAAAAGGTTCGAATGATGAAGCTTATGGCGTGATTGTTCCTGATATTCAGGGATGTTTCTCTGCGGGAGATACTTTTGAAGAAGCATTAAGCAATGCTAAGGAAGCAATTGCAGATCATTTGGAAATTTTAGCAGAGGATGGCAAAAATATTCCTTTGGCATCAGAAGTAAGTAAATTTCTGAATGATGAAAAGTTTAAAGGCTTTATCTGGGCAGTCGTAGATGTTGATGTGAATCGTTATTTAGGTAAGGCTGAAAAAATTAATGTCACTTTACCAAGTCGCTTAATTTATCTCATAGATGATAAAGTAGGTAAAGATAAGCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCACATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //