Array 1 250808-247439 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQO01000003.1 Campylobacter hyointestinalis subsp. hyointestinalis strain S1603d x_contig000003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 250807 30 100.0 34 .............................. TGCGACCTGCAAAAGATAAAAACGCTACAGCTTG 250743 30 100.0 34 .............................. TTAGCATTTTTGAGCAAAAATGCATAAACTCAGC 250679 30 100.0 35 .............................. TACACACTATCTTTGATACTGTCTTGTATTTCACG 250614 30 100.0 35 .............................. TAGTTGGTGTAGAGATAAAGCCAAAAATGGCTATA 250549 30 100.0 38 .............................. AAATTCTTGAAATACATTTTTCTAATTTCACCGATATG 250481 30 100.0 38 .............................. GAAGAAGCATTAGAAGAGCAAGATGAAGACGATCCTGA 250413 30 100.0 36 .............................. CTAACTCTCGTTTTTCTTTTGGGCTTTTAAATTCGT 250347 30 100.0 35 .............................. GCTAAGTCTGAAAAAAAATCTTTGAAAAAAGCCCC 250282 30 100.0 36 .............................. TTATTTGCGATTAGCTCGTTATCCTCCAAAATTGTG 250216 30 100.0 34 .............................. TCAAGGATATTTCTTAAGTCATTTAGTAAATTCT 250152 30 100.0 34 .............................. ATGCTAAAGGCTTGTATCTGTACATCTTGAGCCT 250088 30 100.0 38 .............................. CCCTTGAAGTAAGTGTTGAGAAAATTTCTCAGACTTTG 250020 30 100.0 36 .............................. GCAAATGAGAAAGGCATAGGTAAAAATCTTGCAATA 249954 30 100.0 34 .............................. ATAGTTGCCATATCTAAGCCTCCAATCCGTCTTC 249890 30 100.0 34 .............................. ATGCTATCTTGTATTTCACGTGTGCAAAGTATTC 249826 30 100.0 34 .............................. TTCTCTTAGCGTTGTATTTTGAAAATCTCACGCT 249762 30 100.0 35 .............................. TGAGCGTTTTGCATTGCGTCGTCACATTCGCTACG 249697 30 100.0 37 .............................. CCGTTAAACGCCTCGTGTGTTTTTCGTGGATGTAGCC 249630 30 100.0 38 .............................. AAGCTTCTTTAAACTCATCAGTTACGCTTATATTCAAA 249562 30 100.0 35 .............................. CAGTATCAACCCATAAAGCTTTTTTTATGCCAAAA 249497 30 100.0 33 .............................. TAGAATAGCAGAAAAAAATTTACATAGCCCTAG 249434 30 100.0 35 .............................. GATGACGGATTAGAAATAATGCCAAATTCAAGCAA 249369 30 100.0 35 .............................. GTTTCGGTAAAAGTCCTTTTATGTTTAGAATATAC 249304 30 100.0 34 .............................. TAAATAGATTTGAAGATGATAATCTCACAAATTT 249240 30 100.0 39 .............................. TATTTAAAATAGTTTTCGGGTTGTTGCATACTTTGGATT 249171 30 100.0 34 .............................. ACTAGGCTTTGTTTGCTTGGTGGCGTGTATGTAG 249107 30 100.0 34 .............................. CCACTGCTGAGAGATACTCAGGGCTATTTGGTGG 249043 30 100.0 36 .............................. ATAGGGGATAATAAATGAGCCAAAGAGAAGAGTTTA 248977 30 100.0 35 .............................. AAGAAGCTTTAAAAAGGCAGGTGAATACCATAGAG 248912 30 100.0 36 .............................. TGTTTTGTATTTGATAGAGAGCTAAAAAATGATAGA 248846 30 100.0 34 .............................. AACGGAATAATTGGGCAATTTCACAAGCGCAAAA 248782 30 100.0 34 .............................. TTTATGGTATAATCTACCCATAAAATGCCGTTTC 248718 30 100.0 35 .............................. AAAAACAAGAAGTTGTGAAATATATGAAGCTTAAA 248653 30 100.0 35 .............................. GATTCTGTTGTAAATAATGTTCAAGGCTCTTTTGG 248588 30 100.0 36 .............................. CACTATCAAAATAAAGAGAGACAATCTCAAATAAAA 248522 30 100.0 36 .............................. TTTTCGTAATGGCTATTTATCTCATTTTTGCCATCT 248456 30 100.0 36 .............................. GTTGAGCCTCTACCTCTTTCCTGCCTTGTTGTAAAA 248390 30 100.0 35 .............................. TCATAGTATATTGATACCGCATAAGTGGATCTATC 248325 30 100.0 39 .............................. AATTTTGGCGATAATATAATTTCATTTATCTTGAGTTTT 248256 30 100.0 34 .............................. AAAATTCATTCAACATTTTTTCCCTTTAAATTTG 248192 30 100.0 36 .............................. TAGGTTGGCATTAGGAATCCTTTTCAAAAGGGCAAG 248126 30 100.0 34 .............................. TAGCGTAAATGTCGAAGTTATAAACGAGTGCTTA 248062 30 100.0 35 .............................. TACCTTTGGCGGTGGCTATGGGATAAGCCCTATTG 247997 30 100.0 36 .............................. CTGCTGAACAGAACACTTGAGATGAACTCTTCTCTT 247931 30 100.0 36 .............................. TAGGTTGGCATTAGGAATCCTTTTCAAAAGGGCAAG 247865 30 100.0 37 .............................. TGCTTGAAACAATGCCTGGTAACCAATTTTGCAAGAA 247798 30 100.0 35 .............................. AGTTCATCCCCATCCTTTTTCTCTAAATATTTGTC 247733 30 100.0 36 .............................. AGTAAAGGAAAGTTAAGAAATGATAGGCAATTTACT 247667 30 100.0 36 .............................. AAGGCTTTAGAAGACGCAAGGGCTAAACGTGAAGAA 247601 30 96.7 36 ......................A....... TATTTTTGCAATAATAATCAAAAGCATACTGCCACA 247535 30 100.0 37 .............................. CAAAGCTCATTTGCTCTTGCTCTTCTTTTGGCACAAG 247468 30 96.7 0 .........................T.... | ========== ====== ====== ====== ============================== ======================================= ================== 52 30 99.9 35 GTATAAATTTATCCTTTTAGGATTTGAAAC # Left flank : TCTGCTCAGACAAGGGGTGATAAAACTGCATTTAACATACTTAAATATGCAAAAAACGACCAAAATATAGCCATAACTCAAAATGAATACTGGATAAAAAAGCATAGAAAGATAGATGAAAAAGTATTTTTAAGAAAAGATGTAAAATCCAAAGCAAACTGCGTGGCTTGCCACAAAGAAATAGAAAATGGTATAATCGGCTTGATAGACTATGAAAAAATAAAATAATTTGCAAGTGTTTAGCGAGTTTAAAATTTGCCTTATAGCTATTTTTATTTTGATTTAATATGGTTAAGTTAGATTTATTTATGGATCAACTTTTGCCCAAATACTTAAGAAAAAATTGCTTTAAATAACTTGATAAAGCTATATTTAAGATTTATAAAATAGCTTAAATGCTTTATTTGATGATTTTATAAATACTATATTAAGCCATTTTTTAGTAAAATAAATATAGTAAAACTTGGTACAAAGTACTAAATTTAGCTGTTTTTGTTGCT # Right flank : TTTTGTGATTTGCATTTTTTATCGCTGTTGTAGCTGTTTTGATATTTTTATCCAAAACATCGCTTAGGGTAGTGGCTGTTTTGTTGATCTTATTAAAAGCACTATTAAACTCACTTAAATCAACTCCAAAGGTTAGAGTAGGATTTGCCATATTTAATCCTTTATGTTATACTTTTTAAAAAAGGCTTGTAAATGTTTAGTTTTATTATTATGGTTTTGGTTTTTGCTTTAATAAAATTTTATTGTCATTTTGATTTTAGCTACTCAAAGCCTTACACTGGTAAAACTGATACAAGATATAAAGATATCAAGCTTTAAGCCTCATTTATCCTTTTTGCTATCTCAAAATAATCTATAAATTCATTTAAATCCATAGATAAAATCTCATTAAACCCAAAATAGAAAATTCACATTTTTAGGATTTGTAGCTTACCTTTTTTATATTATAATAACCATATGGAAAGCATTTATAAAACTATACTTGAGCTAATAGCTCACAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATTTATCCTTTTAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //