Array 1 14630-15979 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCLF01000007.1 Yersinia pseudotuberculosis strain M489 NODE_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14630 28 100.0 32 ............................ GGTTTCAAGCTGGATGTTAGTCGTTGGGGAGT 14690 28 100.0 32 ............................ TCTTCATTAGAGACGCAAGCCACTAGAATTTT 14750 28 100.0 33 ............................ CAGTCCATTCTCCTGTTTCTGGGTCTACAGCAG 14811 28 100.0 33 ............................ CTTTAGGGGTGAACTTGTTTTGGATGAAGGCGT 14872 28 100.0 32 ............................ CGTCCGGGCAGCCCGTGACTGGCTGGGAGAAA 14932 28 100.0 32 ............................ ATTTGCATGACGATCCAAAGGCCGGCGAACAC 14992 28 100.0 32 ............................ AGTGAGCAGGTTACCGCGCAGAATAAAATCAC 15052 28 100.0 32 ............................ CGTTACCGCATGTGGCCTGGCCCGCTTACGAT 15112 28 100.0 32 ............................ TATGTGGTACCCGGACTATGAAGGCCTTTACT 15172 28 100.0 32 ............................ GTGAAGCCACAATCAAAATTCTGAATGCTCAA 15232 28 100.0 32 ............................ ATCAGATAAACGCCACCGCGCTGGGTGGCAGT 15292 28 100.0 32 ............................ TCATCTAGTGGCAGGGGGAAGGTCACTGTGGT 15352 28 100.0 32 ............................ TTTCCAGCTCAATACCCGTCATTGCAGGTATC 15412 28 100.0 32 ............................ AGCCATGATGCGCATGGATTTGACGTCTTCAG 15472 28 100.0 32 ............................ AGGCAAACAAATCAATAAACGTGCCGCTGGCT 15532 28 100.0 32 ............................ AACCCACACCAACCGCACCGCCACCGCCCATT 15592 28 100.0 32 ............................ GAAAAGCCTTGCTCAAAACGTACAATGCTGCG 15652 28 100.0 32 ............................ TAATAAAAAATGGTTCTGGTATGTCAATGAAA 15712 28 100.0 32 ............................ AGTGGAGGACTAATGCTAATCGGCTTTGTTCT 15772 28 100.0 32 ............................ TTCACGTATAAAGTCTTTAACATTTAGTGGAG 15832 28 100.0 32 ............................ GCCACCAAACATCAGATAAGTGTGCTTTGATA 15892 28 100.0 32 ............................ TACAGCGTCCCCTTTTTGCAGATCTGCAAATC 15952 28 92.9 0 ........................T.G. | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAGGTCGACGATGTGCTCACGCCGCTTTAACGTATTCATACGCCAACCTTCAACCTTTGGTTATCCGTAAAGTAATTACAACAAAGAACGCCAATCAGAATTGCCACCTGGCTCACAGTACAAAACTTGCTATAAAAACCCTAAAAATCTTTCGATTAGTCATCAATCGAAAGATTATGCTAAGAATATAAGAATGGATAATGGGGAGTGAAACCAGAAATGGCGGAGTATTCGATTCAGTAAAGGGAAAGAAAGTGAAAAAATATAGGCTAAGGGGAGTGGTTATCGCTTTAAAATCAGCCCGTGATAAAGATCACAATAATAACTCATGGGGATTCTTAGCCTATTCACATCAGGGGAATCATTTTTTAACCCTATTTTTTTAGCTATGGCTAACTCATTGATTTTATATCCTGCTTACCGATGGTTAAAAAAAATCATTTTTTACCCTTTGGCGAAATAATTATTTTACAAACAGTCTGTTACCCGTATTATCTTAC # Right flank : AGGGTCACTGTCTGTGCACCAGCGCGGCCCCGGCCTGCGCCTCCTGCAAGTAGGCCAACGCCACGACCAGAGACTGTACCAGGCAGAGCGTGGCTGATTGAGATCGGAAGGCATCTACCTGAGCCTCTTTCACCACAAAACAGAGATCGCTGAACGTGGCGAGCGGGCTTATCTGGCTGTCGGTAATGACAATCTGCCGGGCACCCGCGCTAGCGGCTATTTCACTGACCATCACGGTCTCTTCGGCGTACGGAGAGAAACTGATAGAAACCACGATATCGCGTGCTTTAATGCTGTTCACCTGCTCGCGCAACATCCCCCCGAGGCCATGAAGTTGCACTGGGCGACATTCCAAATGGCTGAGTGCGTAGGTCAGATAGGCGGCCACGCTGAACGAGCGGCGCAGGCCCACCACATAAATGGTATCGGCCTGAGCAAGCAGTTCCACCGCACGTTGCAGCATCTCTGGTTCAGTACGTGCCGCCAACTGCTGTAGTGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16462-13729 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCLF01000086.1 Yersinia pseudotuberculosis strain M489 NODE_86, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 16461 28 100.0 33 ............................ ATTACCGGCAGAGATAACCCTACGGATACATTT 16400 28 100.0 32 ............................ AAGTGGGGGATTGCAGCAGGAAACGAATATTT 16340 28 100.0 32 ............................ AGTCAGATTCGGTCATCACGCCACCTGCTTTT 16280 28 100.0 34 ............................ CGATGGCAAGGCCAACAGCGCCCCGGTATCAGTC 16218 28 100.0 32 ............................ GTATCAACATCAGATCTGTAACGCATCCAAAT 16158 28 100.0 32 ............................ ACCTGGACGCAGACCCACAGACGCAGCGAGAT 16098 28 100.0 32 ............................ GCGCAGGTCGGCACCGTACAGGTTGGCACCGT 16038 28 100.0 32 ............................ CCGCTTTTGGGTGAGGCGTCGCGCATCTGTAC 15978 28 100.0 32 ............................ AGTAATGCAAAAACAGTTATGGAGCTTGATAA 15918 28 100.0 32 ............................ TGGCTACCTCACCCCAATTGCCCTCTTTCAAT 15858 28 100.0 33 ............................ CTCAACGCGCAATGGCTACAAGCCAGCATGGAT 15797 28 100.0 32 ............................ TGACTAGCACCCTCATCTGGCGCGATACCATC 15737 28 100.0 32 ............................ CTGCACAAATTAGCTGTTGCATGGGATACTCC 15677 28 100.0 32 ............................ GTACATCATGATTGAGTAGCCCCAGTTAGCTC 15617 28 96.4 32 A........................... CAGTGGTCGCCATACTCATAGCCCTTATCTTT 15557 28 100.0 32 ............................ GGCATCGAGTCAGTGCGTGAAATTCTGCCTAA 15497 28 100.0 32 ............................ ACAGCAGTAACATTCTTCCGGCCCGTTTCTAT 15437 28 100.0 32 ............................ GGGTGGAATGTTAATAATCAGGTTGCGTGGAT 15377 28 100.0 32 ............................ TGACGGGATGCCTGAATCCAGTGCGCCACGGT 15317 28 100.0 32 ............................ TGATTATCAAAAAGAAAAATTACAGGAAATAG 15257 28 100.0 32 ............................ ACTAATACAGCTTCCCGATTTGTGTACCAGTG 15197 28 100.0 32 ............................ TGTCGCGCAGTGGCTCGCCCGGATGCTGATTG 15137 28 100.0 32 ............................ TGATAGGGTGCATCAGCAAACCAAATCAACTG 15077 28 100.0 32 ............................ AGGCAGAGCGCACATCGGGTGTCGATGCAATC 15017 28 100.0 32 ............................ AGCATGACTGGCGAGTCTCTTCGGGCTGCTAT 14957 28 100.0 32 ............................ GTTTAGAGTTGTTGTGTAAGCAAGGGGTAAAA 14897 28 100.0 32 ............................ CGGATGATTTCCGTTGATGCTGGGACGGGTAC 14837 28 100.0 33 ............................ CCAGCCAACAACGGCGCAGATGCAGCCAAATAC 14776 28 100.0 32 ............................ TTGTGATAGTCCTCGTTCGAAATGTCGTAATA 14716 28 100.0 32 ............................ AAAATTCAGCACGCACCGGCCTACCGCCCAAC 14656 28 100.0 32 ............................ ATTGCAGCAGTGACCCGCAAGCTGAAACAATT 14596 28 100.0 32 ............................ ACTAAAAGCGCGTAAGTCAGATAAGAACCTGA 14536 28 100.0 32 ............................ ACAAATCGCACAAACAAAAAAGCCGAGGATAA 14476 28 100.0 32 ............................ GTACAGAACGCCGTCCTCGTAATAGACACGCT 14416 28 100.0 32 ............................ ATTTATGATACGTGGATATCTGGATACACCGC 14356 28 100.0 32 ............................ TTCCCAGCGCATATCAGCGGTCGCCTCGGTGC 14296 28 100.0 32 ............................ AACACAGTAAACATGATGCCCCAACTTCTGAT 14236 28 100.0 32 ............................ TCACATTTACACCGGAGAATGGGCGCACTGAG 14176 28 100.0 32 ............................ GCCTAGGAGTAGAACCTAATGACAATTAAAAG 14116 28 100.0 32 ............................ AGTGAAGAGGCCGCAAAACTCAAGCAAAAGTA 14056 28 100.0 32 ............................ TGACGGCACCACCGAACCCGTGGTTTCCATAA 13996 28 100.0 32 ............................ AGTCAATTTCTGAGTCTGCCGCTGCTTTTAAT 13936 28 100.0 32 ............................ ACCAAAATTTAAGGTTGGGGACGTGTTTGATA 13876 28 100.0 32 ............................ GTAGAGAACAGTGCTAACACTTACACTGATAA 13816 28 100.0 32 ............................ GTAGAGAACAGTGCTAACACTTACACTGATAA 13756 27 85.7 0 ...................A-.A.T... | C [13732] ========== ====== ====== ====== ============================ ================================== ================== 46 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGCGATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGAAATTGTACTGTGGTTTTATTATGAGTGATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAATTATTTTACAAACAGGATGTTATCCGTATTATCTTACT # Right flank : TTCTGGGCCATGCGCTGATACTATTTGGGGATCAAAATTGCGAGCGGAAGCGCATTTTGTAACAGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTGTGAGTATTAGAGTAGGGTAAATAGCAGGTGGCATATCAATATATACCCGTCATACTTCAAATTGCATGTATGTTGGCTGCGCTCAATTATCCCAGTCACTTACTGGTGTAAGCGCTTGGGGATTGACTCAACTACTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTCTGGAATAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGTGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 35783-34193 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCLF01000011.1 Yersinia pseudotuberculosis strain M489 NODE_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35782 28 100.0 32 ............................ CCCAGGCATCAGCGATTGAATTGCGGCGGTAT 35722 28 100.0 32 ............................ ACAGACGCGGTGATGTTTTGCAATGAAAAAAG 35662 28 100.0 32 ............................ AAAACAATGACACAATAATGCAGAATTTAGCA 35602 28 100.0 32 ............................ TATTGGCAGCGCGGCTATTTACTCTGACCACG 35542 28 100.0 32 ............................ GCAGAAAAAAACAGAGAAAAGCAATGCAGTCA 35482 28 100.0 32 ............................ CTGAATATCCGGAATTTAATTCCCATTCATTT 35422 28 100.0 32 ............................ TCTAACGCAATGCGCCAAAGGGATATGTGTTT 35362 28 100.0 32 ............................ AATACCCCACTGGACAGCCGCACGCTTCATCG 35302 28 100.0 32 ............................ AGCGAGACTGACTGAGCATCAACCTGATACTT 35242 28 100.0 32 ............................ AACTACCAGGCTGTGATTTTTGCCAAGGAGGG 35182 28 100.0 33 ............................ CTTTGAGCAAAGAGGGGAATGCAGATGCTGAGT 35121 28 100.0 32 ............................ AATACGAGCCTCAGGGCTACGTCTATCCGGAT 35061 28 100.0 33 ............................ CAAACCAGTAGGATGAGCCGCTTGAATATTTGT 35000 28 100.0 32 ............................ AAGCGAGTCTGACGAGTAGCAAATCCCGATCC 34940 28 100.0 32 ............................ AAGAACAATTCCAGCCCGAAGCCGCTTTTAAG 34880 28 100.0 32 ............................ GGACAGACAATATCACGTTCCAGTAATGGACA 34820 28 100.0 32 ............................ GCCACAATGAGCAAGGCGAAACTAACCGGATT 34760 28 100.0 32 ............................ TATCTGGCAGGATGGCTATCTCAGCAGGTGAA 34700 28 100.0 32 ............................ GGTCAGCGGCAACCAACACTGGCAACCGGTCA 34640 28 100.0 32 ............................ GCTTATTTAGAAGCCCACCACATAGTTAAGGG 34580 28 100.0 32 ............................ AGAGATATTAAGAGGGATGGGCTGATACTGGT 34520 28 100.0 32 ............................ GTTGCTGCCAGAGGTCACTGTAGCCACGGTGG 34460 28 96.4 32 ..................T......... GTCCGGTGCCGTGAAATCGGCGTACCAAACGG 34400 28 100.0 32 ............................ CAAAACCGGCGCAATGATAGATGAAATCGCTA 34340 28 100.0 32 ............................ CACGCCAGTTATAGTCGTAGAACCCTTTATTA 34280 28 100.0 32 ............................ GTCATAGAGCGGCGGCGCGACAATCACAAAAG 34220 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CCGGCCTTGTTGGCACAACGACTCTACTGGCAGCATTTTGCTACGGTGATAGCGCATGCTTTTGCGCTTAACCCGCAACTTAAATCGTTGGCAACTGCAGAGACACTATTGTGCCGTTGCGAGGATGTGGCTTTAGGGCAGATTGTCGGGCAACGGGATTGGGTGGCCGCCAAGCTGGCTAGCCGCTGTGGCATGGGGGCTTGTCAGGGGAAAGTCTGCGCCACCGCTGCCCGTTATCTGTTTGGCTGGCCGTTGCCAACCCCCAGAGTGCCATTGACGCCTGTCAGGCTAGAAACATTGGCGGCGACTCCGCCGTTCTCCTCAGAAAAATAATCATTAGGATCCGGTTACATCCCCACAGGTTCTTGTGACCCTCTTTTTTTCACTATTACTAACTTATTGATTTTTATACTGCTCAGGTGTTTCACTAAAAAAAGGGTTTTTACGCATTTTGCGCAATTGCTAATTGATAAACATCAGGTTATCCGTATTATCTTACT # Right flank : TGTACGTCGCCTTACGTTAGTTGGGGAGTGGCTTCTGGCTTCGGTGTGGTTGTTTTAAAATGATCCCTTTATTCTGAGTGTTTTTGCTTTCTATGGGCCAACTAACTTGAACTGTGCCAATCATAGACAAGACACCTTGCGGTAATACACTGCCATACGTGAAGTTACTAGCACTTACGCGAATTTAAAACCGGCCACAGCACATGATGAGTATGGGGGTGTGTGAGTAAGGCGATAAAATACAGCGCCGGGCTTTCTTGCCCGGTGTGAACAAAACCGCCTCTAATGGGGCAAACCAGACTCTCTATCACAGTTTAAACCTATCTCGCTCTTTGTATTTCGCAATGAGAAATGTGATCAGTGCTATCAATGCGACCAGTAAAAATAGATAGCCTAGGGGGATCAAGAAGAAAGGTTCATGTAAGACACCATCCTCGTCAATATAGCTGCCCGCCAAAGCCTTACTAATAAAACAGCCAAGCCCGGTGAGTCCAAAAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 12429-11681 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCLF01000093.1 Yersinia pseudotuberculosis strain M489 NODE_93, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12428 28 100.0 32 ............................ ATCCAGTGAAATCAACGTCCCATCATATCTAT 12368 28 100.0 32 ............................ CAGTTGATTGCTCAGCTTGCGCAGCTCCCGCC 12308 28 100.0 32 ............................ CACTCCCGCCAGCAATGGCTGAACAGCGGAAA 12248 28 96.4 32 .C.......................... AATCTGGTGTTGGCAGGCGCAGCCGCTAAAGA 12188 28 100.0 32 ............................ GTGGGGGGCTGAATATCAACCCACACCGGCTC 12128 28 100.0 32 ............................ GCCAACGTTGATTACATTAGTTCCTGAGGTTC 12068 28 100.0 32 ............................ ATTGGGGGGCAACTCCACATACACCCCTCCGT 12008 28 100.0 32 ............................ TCCATAAATGATTTACGCTTTTTGGCTGCTGA 11948 28 100.0 32 ............................ CATATGAGAATGGATGCGGGGGCCAACCGCAC 11888 28 100.0 32 ............................ AGTCGGAAATCTCCCGCGCTTCACGAATGGGG 11828 28 100.0 32 ............................ ATTACACACACGTCATCAAGTTCCCCGTATTC 11768 28 100.0 32 ............................ TCCATGACACCGGCACGCGTCAACACAGAAAT 11708 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTTTAGTGATTCTGATGGCAGTTATATTTGATGCCATCATTTTTATACCTGCAGCGTTAATATTTTACTTCCTCGGAAGGTCAGCCAAAAAGTCTAAGACTGCAAACGTACTCAATAAGCTGGCAGTAGGATCGCTCATTATCGGCACCATATTTGCAATCGTTGTAATCGATGCATTTAGTTAGCCACAGCCATAAATACCTAGCCGCCTACGGGCGGTTTTTTTACGCCTAAATTTCAGCACAGCGCGGCCTTGCAAAGTGACTACATAATGTCACTAAGGGATCATCATGGCAGTAAAAGATACGGGCTGGAGAAGTATAGAGCATAATTATGCCGTTTAAGCCTCGATCAGAGAACGTAGTGTTTTGACCCTATTTTTTTAGCCTCTTCTAACTCATTGATTTTATACCGTAGCTACAGCAGGATAAAAAAATCATTTTTTGCCCTTTAGCTAAATAGTTATTTTACAAACAGTATCTTACCCGTATTATCTTACA # Right flank : ATTGGATAGTCACTCAACTGACAAATTCTGCGTTGCAAAATAAACGTGTGTCAGATTAGGTTTAGACTGCAGTATTTTGTGCTGACCATACCAGATGATACCAGTTGCACGGAAAGGGTATCATCAACGCTATGCCAGATAGATAACATCAGGTAATCTCCCTACATGCCGGGTGGAATGGGTGGAAAGGGTGTGGACAGAAAATTCATCGAGACACTGAAAACATACTGTGATGATGCTAACCGGGGAGGGGGGCCGCTCTACCAGCGTCTGGAGAAAGGTTTCCGCGACCTGATCACCCGTGGTGAGCTAAAAGCCGGATACGCGATTCCCAGCGAACGCGAACTTTCGGAACGCTTGAATCTGTCCAGAGTGACAGTCCGGCGTGCGTTAAGTGAACTGGCTAACGCGCAGGTTATCGTGCAGCGTCGTGGAGCGAGAAGTACTGTGGCGGGAAGGGTTGAAAAGCCGCTGTCTTCGCTGACCAGCTTTAGTGAGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //