Array 1 181564-179403 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWGY01000006.1 Klebsiella pneumoniae strain VRES0209, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 181563 29 100.0 32 ............................. GCCGACATGCTGGGCGCGATCACAACGGTTAA 181502 29 100.0 32 ............................. GGCGCGGTGTGGTATTGGGTGAAACTGGACGA 181441 29 100.0 32 ............................. GCACTTTACCTTCGAGGTCGTTCCCTTCGAGG 181380 29 100.0 32 ............................. ATGTATGGATCGAGCCAGGCGCAACCACGAAC 181319 29 100.0 32 ............................. CCAGGGCTTTCGGACCGTCAGGAGCAAATCAA 181258 29 100.0 32 ............................. TAAACGGCACAAGCGGCACCTGCGGCCAGGTG 181197 29 100.0 32 ............................. CGTGTCGGTCATGGCGATGCTGGGCGGCGATA 181136 29 100.0 32 ............................. CGCCTGGGGGGATCGCGGTGAGTGATTCATTT 181075 29 100.0 32 ............................. CGCCTCAACAAATGCGACTTCATAGCCTGCTG 181014 29 100.0 32 ............................. GCTCGGTGTGGCCTAAATCAATTCGCGGATCC 180953 29 96.6 32 ............................C CTTGCATACGTGTTACCCTCCATAACCTCACA 180892 29 100.0 32 ............................. CGTCGCCTGGCCGTCTGGTAAGTCCGGTTTTA 180831 29 100.0 32 ............................. CAGATATCGGCACCGCGAGGTTCTGAGTCGTA 180770 29 100.0 32 ............................. AGATCGAATAGTCGTAGTTTGTTTTACGGCAG 180709 29 100.0 32 ............................. CTGGAACGGACCCTGAGCGCCTTTGGGGGAAA 180648 29 100.0 32 ............................. ATTTCTCCGGTTGCCCTGGGTTCCCGGGGCAT 180587 29 100.0 32 ............................. GTGCTGGCCTTGAGCTTTTCAGCAATACGTCC 180526 29 100.0 32 ............................. TGCAGACGCGGCACTTTTACCCACGCTTGAGC 180465 29 100.0 32 ............................. ATATTCCGAGCGTTGCCAGCCTGCTGCGCAAT 180404 29 100.0 32 ............................. GCGGCGGCGTTAGAGCGCGCGCCAGCGTTTTC 180343 29 100.0 32 ............................. ACGGCATCTGCGAAATTCATGTTGCTAAATAC 180282 29 100.0 32 ............................. GCTGCGTATAAAGGCTGCAGACCGGAGAGAGG 180221 29 100.0 32 ............................. ACTGCGATTCGTTGACGATTATTCCTCCGCGA 180160 29 100.0 32 ............................. CGTTATTTTAAAAGCTGACGGCGAAGTGGTGG 180099 29 96.6 32 ............................A GCGCACCCGAACCATTACGGGGCTTGCCATTC 180038 29 100.0 32 ............................. GCCGAGTTCGTCAATGCTATGAATTTTATAAC 179977 29 100.0 32 ............................. CCGGACAACGCGGTCAGTACAGATTTCATTGG 179916 29 100.0 32 ............................. GGCAGCGAGGCGCAGATCCCGCAGCTTTACCA 179855 29 100.0 32 ............................. TTCGGCCAATAACCGACTATGTGAGGGACTTT 179794 29 100.0 32 ............................. CCCGATAAATTCACTCTGTGTCATACGGTGAT 179733 29 100.0 32 ............................. GCATCGACGCCCGTATCGTTATCGACAAAATA 179672 29 100.0 32 ............................. ACACGTCGTTAGGTGTTCCGTACTGGGAGAAA 179611 29 100.0 32 ............................. CCAGGCGACCGTATCTGGGTGCGTGAAACGTG 179550 29 100.0 32 ............................. CCGCAAGCCGTATCAACGAATTACTGCTCGAA 179489 29 100.0 29 ............................. GGGGTCACTTGGGTGAAACTGAACTAACT 179431 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAAATTGTTGTGATAAAGTTGGTGAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGTACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 67081-67353 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWGY01000011.1 Klebsiella pneumoniae strain VRES0209, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67081 29 100.0 32 ............................. AGTAGCGCGTCAGCATCTCCAGGTCGTCCTTA 67142 29 100.0 32 ............................. GAGTACACGGAGGTGAAGCAATGATTACCGGT 67203 29 96.6 31 ............................A ATAGAAAAACTGGCCGAATATGAGCAGCCAC 67263 29 100.0 32 ............................. GATTTTAGCGGATACACCAAAACTCGCCAAAA 67324 29 100.0 0 ............................. | T [67351] ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTTCCCCTGCGTGCGGGGGTTATCGG # Left flank : GGGGGGCGGCGATCAGGTTTTTACTCAAAATGGGTTTTACGGTCGGCCTTGTAGGGCATCCCGCTGTAGGTAAGTCATACCTGCTCGCCCGGACATTGCCAGAAGGTTTTATTGACGGTCGAGAACTGGTGGCGAAGAACAACTGGGAAACGCCGGTGCCATTCCCTTCCGACAAGATCCCGTCCGGGCCTGTAGGCATTGATGACGGAAATGTGTTCGGGAATGAAGCTTTGTTATCGGCAGCGGCGACCCTGAAAAAATGCGGCGTTGTGTTTACTGCTCAACGCCTGAAAAATGCAGAGAGCCTCGCGACAAGTTTAATGGCGCGGCGTGTGCTGATTTTTTATATCGGTGAGTATGAGTATTTTAAGTTTGAAGTTGCGGCACACTATGATCGGCGCAGGAAATCCTGAACCTGCGGAGGTGATTTTTACGCCTCAGAATCTGGTGGAAAATGAATGAATAGAATTTGCATTTGTAATCAATAGTATATAGTTAGA # Right flank : GGCTATATCGAACGCGTAACTGGGAAGTGATATTCAGAAGAAAACATTCGCTCGCAAAATACCTATAGCTAAAACCGGTTCGCCGGTTTTTTTTTGTGCCTGCGGTATTCGGCATATCTTTTGCGGGAAGGATAATAGATTCCTGCGAAACTATTTGAATAAGGTGACAATAATGGCTCAGGTTCAGAGAGGTAAAACGGTTCCCGTTCGGCCATCAGCGACGTATTTCAGCTATAGCCCCGACGACGGGTATGAGGAGCATGACTCCCCGGAGAAGGCAAAAGCTGCGGCAGACGCTGCAATTCATGCTTATCGGGGTGAAGCATGTGATGGCTGGCCTGATGAAGTGACCGGCGTTACGTGGGGTGTGGTGGCACAACGAGCGGCAAAGTTTGGCGAGCGTAAGCGCACTAATGAAGACGCGCATCTTTCTCCAGAAATTCAAACGGTCTGTGACTACTATCTTGCGCCGGAAGTGACCGTACCAGCCTCACTCCCCT # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTCCCCTGCGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 104547-105061 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWGY01000011.1 Klebsiella pneumoniae strain VRES0209, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 104547 28 100.0 33 ............................ GCTTTGTTAATCTTCAGGAGCCTGGCAGCCTGA 104608 26 89.3 38 ...........--...T........... GGCCAGACGCCCAACGCACTCTCGCCAGCTAAGCCTCA 104672 26 89.3 33 ...........--...T........... GGGAACAACGGACTGAGAATAACGCATAATGGC 104731 28 96.4 33 ....G....................... GTTCCTGTTTGGTTTCTCGATTATTTCCACCTT 104792 26 82.1 33 ...........--..TT.........T. GCTTGTCCGCAATCCGGCGTTTCATCGCCGTTA 104851 28 89.3 33 ..........G..T...A.......... AGGATGGATGTCCTGCGAAATTACAGCGTGACA 104912 28 96.4 33 ............T............... ATAGCAATGAACTGTATCACGATTGCCACCAAA 104973 28 100.0 33 ............................ GAGCTGCATAGTTATATCCTGTGTTATTAACTA 105034 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 9 28 93.6 34 GTGTTTCCCCTGCGTGCGGGGGTTATCG # Left flank : TAAAGACACAAAGGCGGATTTGCAGAAAAAAGTTAACGAACTGGATGAAAAAATTCAGTCTCGTAAGGATGAAAAATCCGAAGCCCGTGAGTCCATTCGTCGTCCTATTGACCCCTATGAAGCATTCATTGCCGGGGCTGAACTGAATCACCGAATGAGCATTAAAAATGCCACTGACGAAGAAGCTGGCCTGTTTATCTCTGCGCTTGTTCGTTTCGCTTCTGAACCACGTCTCGGCAGTCATGCGAATCACAACTGCGGGCTGGTGGAAGCAAACTGGAGCGTCACGACATGGAAGCCGGGTGAACTCACGCCAGTCACCCTCGGCGAGATCAGTATTAGCCCTAGCGGTGTAAAAATCGAAGGTGAAGAGCTGTCCGCTATGGTCGCTGCTTTTGCAAAGGCAGATGGATTTGATTTTAAAGCCCGGTGATGCATAATTTCTCGGTAGGAAAAATATGAACTATTTTTCCTATTTATATCAATGCAATATGATTAGA # Right flank : GGCATTTTACGCGATGGTTGAAGAAGCTTGTTGAATGTTTCCCCTGCGTGGGGTTATCGAGAGACGCAAACACGGCACTACAGCAACGAGAGGTATTTTCCCTTCTTCGCGGGGTTAACGATGTTGTGGGCGAAGGAATATGCCATCAATAGCATTCCCCTTCTGGGGGTTAACGGGCCGTAAGAAATGCAAGTATTGATACATCCCCTTTTTTGGGGTAAACGCATGGTAAAAATGAATAGGATTTTTTAGCGAGAAAATCAGAATAGGATTTAGCAAAACAGTTTTATTGCTACAAATACCCTTGTTGGTTAAAATACATACTGTATAAACCAACAGGGGTATCCGTTATGGATTTAAGAAAGACATTTGAACAACTTACCGACGAACTGCTTGCGCTGAAAAAGTTGATCAGCGAAAGCTCGCCGTTGTTTGCTCGTGTCTCGGTAATCCCCCCGGTTTTGCGCGGCGCGGAGAATGAGCCTGTTAATGAGATTGTT # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTCCCCTGCGTGCGGGGGTTATCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //