Array 1 1390447-1389286 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014201.1 Lacticaseibacillus rhamnosus strain BFE5264 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1390446 36 100.0 30 .................................... CAGTGTTGATTGTGATGTCTTCTGCTGTTC 1390380 36 100.0 30 .................................... AACGTTGGCTGAACTTGACCGAAAAATACG 1390314 36 100.0 31 .................................... TCGACCAGCTCTATGCATTCGAACGTCCAGG 1390247 36 100.0 30 .................................... CCTACCGATGACGTTAATTCCAGAAATAGA 1390181 36 97.2 30 .............................T...... CTTTGCTATGCGGCATCACATTCACTGTGC 1390115 36 100.0 30 .................................... AAGCACAAGCCGCGATTGATGCGCTGCATC 1390049 36 100.0 30 .................................... CGCCTTGCTTGAGCCACGGAAGACGTCTCA 1389983 36 100.0 30 .................................... AAAGTAGCATTGCAGATTTGGCAGCCGCCA 1389917 36 100.0 30 .................................... GGTAACACTTGCGGATTTGAAGACGATGAT 1389851 36 100.0 30 .................................... CCCATTCTTATTGTCATTGATTTGCTTACT 1389785 36 100.0 30 .................................... TCTTGAATGGCATCGCCATCAGGCTTGGTA 1389719 36 100.0 30 .................................... CAGCATAAGAGACTTGTCATCAGTCGCCTA 1389653 36 100.0 30 .................................... AAGTGTCATGGAAGCAATATCACTCTTCTT 1389587 36 100.0 30 .................................... ACGTTTAGAATGATACCACTTGGATGTTGT 1389521 36 97.2 30 ..................................A. AGCCCTGAAAGAAATTGATTACGGTGTATT 1389455 36 97.2 30 ..................................A. AGGCGAAGAACTGGCGCTGACAGTCGGTGA 1389389 36 97.2 30 ..................................A. ACTCGGGTATTGACAAAGATCGACGCGGCA 1389323 36 83.3 0 .......................AA.C....G..AG | T,C [1389288,1389294] ========== ====== ====== ====== ==================================== =============================== ================== 18 36 98.5 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : CGGAAGTAGGTCAAAGTTGAGGCATTGAAAGGAATCTTGGCCTCGTAACGTGTTCTTCCCATGAAGTACTGAAACGCTGGCGTGTCGCGAATGGCCTCCACCAGCTTCGCGTCTGATAAATGTGTCCGCTGTTTGATCAGCTCGGCACCGTACAACTCGCGAAATGGTTTTGCAGCACGTCCGGCACTCTTATTAAAGACAGATTGGTATGCTTCATCCAGCTTCTGCCATGGAATGAGCGAGGCTAACTTCACCCACTCGTTATCAGGACTGAGTGATGTGCCCAGGCCGCAATCAAACGATTCGAAAGATAGTTGAACGTCAGTATGCCGATAAACCATGGATAAATCCTCCGTTACGAGATGACAAGTGCAAGGGAAACTGCCAAAAACAGGAAATTCCTCTGCATTCATTATACGACAGTAACGGAACGGTTCCCATGAAAACAAGGCACTTACAAATATTCAGTATCCACTAACTAAAGGTGATCCAAACGATCT # Right flank : ACTCACCTCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCGCCAGCATTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACCAATCCCTACTGTGAATCGTTGAAAAGCTTACAGAAAAAGTTCAAACGGCCTAACAATGCCTTCTTCTTTATAACCGTTGAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCGCAAAAATTCGGCAGCCCGTATTTCACCATTTTTAATCTTGCCGTTTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCCAAGTTGGTACATTTGTATCGCAAAGTCGGTTTTCAGCAGCTACCAGATCGGGAAACGACGATTAATGAGCATA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1393140-1392048 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014201.1 Lacticaseibacillus rhamnosus strain BFE5264 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1393139 36 100.0 30 .................................... ATTTTGATACTGAAATTGGTGAAAGTAAAG 1393073 36 100.0 30 .................................... CGCAGCAGGTTAGTCAAGTGGCTAGTAGTC 1393007 36 100.0 30 .................................... AATAGGAAACGTGAGTGTGTCTAAGCCCGT 1392941 36 100.0 30 .................................... TTCTGCATCAACTGCCAAATATTTTTTGCT 1392875 36 100.0 30 .................................... CACAAGCAGACGCGAATACCTATCAGTCTT 1392809 36 100.0 30 .................................... TTGGGATTGGTAAGCTGCGACATGAATTTA 1392743 36 100.0 30 .................................... GGATCAAGGCGTTCGCGGACAAGCAAGACA 1392677 36 100.0 30 .................................... TCCCATGATGTTCTTGGGGCTTATCAGCGT 1392611 36 100.0 30 .................................... GTGATCATTGGTCACTGCTTAGGCCACAGC 1392545 36 100.0 30 .................................... TTCATGATGGCAAAGAAGCTTTCGCTCCAA 1392479 36 100.0 30 .................................... TAATTCGACCACAGCAAAGGGCACACAGCT 1392413 36 100.0 30 .................................... CGGTTTGCTTGTAATTAATCGATGCTACTA 1392347 36 100.0 30 .................................... TAATTCGACCACAGCAAAGGGCACACAGCT 1392281 36 100.0 30 .................................... CGGTTTGCTTGTAATTAATCGATGCTACTA 1392215 36 100.0 30 .................................... GCACGTTAGAGAGTGACTTTGAAAAGCTTT 1392149 36 100.0 30 .................................... TATGGGAAACAGTTAGTCACTGTAAACCCT 1392083 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : GAGCTGGATTTGGACAAGTTATTCCAACGCTTGATCATCAAGAAGGTAAGTCAATTGATAGAGGATCGGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAAGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTAAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTACCAACATCAGTCATTATTTAGATGTTGATAGTTTGAACAAGCTGTTAGATCAGGTTAAGGAAACATCGTTAGAATTACTTCTCATTGAATTTTCGGATGTCGAACGTAGAAAGTTTTTTGAGAGGTGCCAGTATATCTATATTGACAAAGATTTCATGGATAGCCGTGAACTGATTGATTAAGAGACTGTGTGAAAACACCG # Right flank : ATGGGTAACTAGTCAGTACTGAACTAGGCTGCTGACTTTGACCGTTCAGTGATGACTTTATAGTTAATTTGATATGTTTTGCCGGCTCTGTGGGTAATGACGGAAATTGGTATAGAAAAAATACCCAAAAGAAGCATGAGGTTAGCCAACACAATAGCTGAATCAACTTCGACCACCAGAGATTCAGCGGTTCTTGTGTTCACTAAATCAAGCCCAAGCGAGCCTTTCAAGAAGGCAAACTTGCGTTCAATCGCACCGCGTCTGTTCTCCGCATCAGTATCCAGCTTGCGCTGATTGGCATCTACATGCTTCGGCCGGCGGCCCAGCTTAGGCCCACTCAGTTTGATGCCCAGCTCCTTGCACAATGCAATATTCGCTCGGGTTCGGTACAGGGTGTCAGCTAGTACCTCATCGGGATACTGCCCCAGTGTATCCCAACAATGATCGAGGGTTGCGGCCAGGTCAGTGCTTTCGTTAAAGCTCTCGAAGTCAAAACGCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //