Array 1 95011-94128 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHVMQ010000001.1 Escherichia coli strain HECS7 NODE_1_length_422114_cov_84.0467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95010 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 94949 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 94888 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 94827 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 94766 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 94705 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 94644 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 94583 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 94522 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 94461 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 94400 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 94339 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 94278 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 94217 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 94156 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121777-120711 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHVMQ010000001.1 Escherichia coli strain HECS7 NODE_1_length_422114_cov_84.0467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 121776 29 100.0 32 ............................. GCGCTCGATAGTGATTATTGGAAGGTGGGCGA 121715 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 121654 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 121593 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 121532 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 121471 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 121410 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 121349 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 121288 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 121227 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 121166 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 121105 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 121044 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 120983 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 120922 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 120861 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 120800 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 120739 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //