Array 1 48423-49290 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABKAW020000001.1 Shewanella sp. BF02_Schw 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48423 28 100.0 32 ............................ GTTGGCGTCACAGCATTGCCTTGCGCATTATA 48483 28 100.0 32 ............................ ATGGGTAATGCAAGCCGTCCAATTAAGCAGAC 48543 28 100.0 32 ............................ TTAGGTATCAGCGACCCTAGCGTGTATCCATT 48603 28 100.0 32 ............................ GCTATCACCCATAGGTGTTGATGTGCAACCAA 48663 28 100.0 32 ............................ TTACTTGCATAACCGTATGACGTGCCACCTGG 48723 28 100.0 32 ............................ ACCGTAGAGTAGTTGCGTAGAATTGAAGGTTA 48783 28 100.0 32 ............................ GTTAACTTGAGCGGCATTTTTAGCGCTTATGC 48843 28 100.0 32 ............................ AGCAGCACCCATACCCAAGCCGCCGTTGATCA 48903 28 100.0 32 ............................ CAATACAGTGACTCTCGCCGTGTCCCGCTACA 48963 28 100.0 32 ............................ CAAGAGGTAATGAACGATGAAAGTTAAAATGA 49023 28 100.0 32 ............................ TACACGGCAGAACACTGACAGCAAGCCTTGCC 49083 28 100.0 32 ............................ TTTCAAGTCATTCCCTCGTTTTACTCGGCTAT 49143 28 100.0 32 ............................ TTCACTGTGATGGAAATATTCAACGGCGATGA 49203 28 100.0 32 ............................ TTTTCAAGTTCGACAAGGCTTGAGCTGCTTTC 49263 28 92.9 0 .......................A.C.. | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.5 32 GTTCACTATCGAGTGTGTGGCATGTAAG # Left flank : AATTCTAAAGAATTTAAACCCGTTAAGGGGGCCTTGGATTTTGAACTGGCAAACATGAAGCAAGGTGATTTCATTTACCTATTTCTATCACTCATCCGCACTACTCCGTTTGAAAACTATGTTGAGTTATCTTGCACTTAATTGATGTTTACTTCCATGCCCTTATGTTTATACTCTGTATTGGGTGCGGTTCTCCTATTGAGATTTATCTTACCACCCTTGTACTTTGTCCAAAGCTGTATGACCTATTTATAGGCTTAACTTGGAGAGGTCTAAAGTCAATAGCTATGAACGTTTAGGAGCACTGCTTCGAGACATAGAACGTAATTCGTTTAGCTGACACTACGATAGTGAATTTGCTCTTTAAAATACCTTATTTTTACGTGAAGCCGTAAGGTCTTGATTTATTGTGTGATTACATTTGCGCTAAATAAAAGGGTATAACTCGGTGAATTGAGGCAACTTGTTGAAAATTTGCAACATTGGGATAATAGCTTATT # Right flank : GTGACATCGAGGCGATATATAAATGCGTACTAAAGCTGCTCCTGGCACAATGAGTGTGTTCAAGACTTATCGTTTCGAAATTCATAACCCATCCAGTTCAAAACGCAAGAAACTACTCCAAACTTACAAGCAATCCGATATGCTCTACTACAAGGCATTGGCATCCTGCGAAGACGATGCTAACAAAATGTTGATGCTTGAAACCCCAAAAGAACGTAGAGATGCATTACATAAAATCCAGAGTAAAATTCAAGAAATAGTAAAACCTTTACCGTTTGGGAATGCTGTAAAAGCCTCTGTTATTGAAACGGTTAAGTCTCAAATCAGTTCTTTTGTAGAGCTATCACTATCAGGTCAGGATGCGGCCTACCCCTCCAAGCTAAACAAAGAGTTTGACTATCAGTATTGGTTAGATGTGCTTATTCGCTCTACAAGTAGGGAGACTGAGGTAGAGGCTAAAAATTCAATTGCGACATTAGATACGAGAGCATATCGTCCAC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTATCGAGTGTGTGGCATGTAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 376418-368236 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABKAW020000003.1 Shewanella sp. BF02_Schw 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 376417 28 100.0 32 ............................ AACAAACTTTTTTGTTGGGCGGTTAGCACATC 376357 28 100.0 32 ............................ TCATCAACCGAACAACCAGCATCAACGGCTTT 376297 28 100.0 32 ............................ CATCCCCTTGTATATCGCCGGTAGATTTTACT 376237 28 100.0 32 ............................ GTGCGAAAAAAGCGAAGCAGAGTATTTTTCAA 376177 28 100.0 32 ............................ GAGGAGGATTCATTAATCCAAGGGAGACTAAT 376117 28 100.0 32 ............................ AACGTGTTTGCGGATATGTAGCAACAATGCAA 376057 28 100.0 32 ............................ TTACACCGAGGTGAGATTTGTTTCAACCTGTT 375997 28 100.0 32 ............................ TCCATGTCCAGATACCAAAATTTGTTCTTTGT 375937 28 100.0 32 ............................ GGTTAGCAACACACTCTCGCTAGGATGGTAAG 375877 28 100.0 32 ............................ TTGCCCAAAAAGGTTTAGTTGTCCCTCCCCAA 375817 28 100.0 32 ............................ TTGCGTAGAGCTTGACCCTTGTTGACCCTTTA 375757 28 100.0 32 ............................ TCAACAATATTGAATCGGCTAGTTATGAGATA 375697 28 100.0 32 ............................ ATCATTTCGCACCCAAACGATAGCCACTAAGT 375637 28 100.0 32 ............................ TCTAAGTAAAAGCCGTTAGTGTATGTAGCGTC 375577 28 100.0 32 ............................ CAATCGTGATTTGTTGAAAAATACTCTGCTTC 375517 28 100.0 32 ............................ TTAAGGTTTTTTGACAAAGAGCTTTACGACAT 375457 28 100.0 32 ............................ TATACGGAACTCACCCCCGTGGTACTCCCCTG 375397 28 100.0 32 ............................ AAAAGGTAGCCCTAAACCCAAACCTAAGCGCA 375337 28 100.0 32 ............................ AACACCACTATTTATTATTAAGCTCCTTAAAG 375277 28 100.0 32 ............................ TTGGCGGCAGTGACTGCGAGGTTTATTAATGT 375217 28 100.0 32 ............................ GACCCCCCGTTTTAACCTGTAGCCAATACGCT 375157 28 100.0 32 ............................ CCAATGAGTGATCAACAAGCCACAACCCAATA 375097 28 100.0 32 ............................ AGTTGCACCGCTTACAGGTGACCCGTTTTTAT 375037 28 100.0 32 ............................ TTCTGATGGCCCATTAAAAACTGGGATCGCGT 374977 28 100.0 32 ............................ TATACAGCCAAGTGTTAGCCTAATCTTGACCG 374917 28 100.0 32 ............................ ATACAACAATGAGGTGCTGCGACCATCACATA 374857 28 100.0 32 ............................ TATCGTGTCTGACGGTAACATCGTTGAATCGG 374797 28 100.0 32 ............................ ACAATAAACCAATATGATAGTATGTTGGCAAA 374737 28 100.0 32 ............................ AACAAGGCATCACTTGCCGCTATTGCAGGTTT 374677 28 100.0 32 ............................ ATGGCCAAGCAAATGTTTGTCACTAACGATGA 374617 28 96.4 32 ..................T......... AGCAGCAAGCCCAAGGGGGTGCAGTATTTCCC 374557 28 100.0 32 ............................ TCTGCTATGAATTTTCACTAACATAATTGTGC 374497 28 100.0 32 ............................ ACAGGCAATCGTATTGATTGGGGTCGAGTCCA 374437 28 100.0 32 ............................ TACTAGCACTAATTGTAAATAGCTAGATTTAC 374377 28 100.0 32 ............................ AGATTGAAAACTATCGACTACATCACCAAAGC 374317 28 100.0 32 ............................ TTCCAATTCAACTATCTGTAAATCTGCATCAC 374257 28 100.0 32 ............................ ATTAGGGCACAAAGTAACCGCTATTGATGCGA 374197 28 100.0 32 ............................ AAATCGAAATGACCATCATTCACAGCGGCGAT 374137 28 100.0 32 ............................ AGACCCCATCAATCGACCCTGAAATATCCAAA 374077 28 100.0 32 ............................ TTAATGAAAGCGGCGCGGAATCAGTTAAGCGC 374017 28 100.0 32 ............................ AACCAACGAGCAATCCTAGTGTGTTCAAATGT 373957 28 100.0 32 ............................ TGTCTCATTATTTACAAGTATGTTATCGCCGT 373897 28 100.0 32 ............................ TTCTCTAGCCGATTCTATTTGCTTAACTACGT 373837 28 100.0 32 ............................ CAGAAGATCCCATGAAGAGTTCAGCTCCATAT 373777 28 100.0 32 ............................ TATATACTTAGATGCTGACGGGGTGTTCATGA 373717 28 100.0 32 ............................ TTACCCGTTAATCGCGAGTGGTGGTTTTATTT 373657 28 100.0 32 ............................ ACACCGGCTTTGCAATATCGCATCACGCTGGG 373597 28 100.0 32 ............................ TTTATACACTTCAGCTCCTTCACGAACGCCAA 373537 28 100.0 32 ............................ ATTAACAACAGGCGTTAAACTTAGTCCTGTTG 373477 28 100.0 32 ............................ AGATTGAAAACTATCGACTACATCACCAAAGC 373417 28 100.0 32 ............................ TTACGCCATTACAGCTTTAATTAAATTAGTAA 373357 28 100.0 32 ............................ GTTTACATGCAATCGGCGGTTCAGCAGAAAAT 373297 28 100.0 32 ............................ ACAAAGAGATCATCACCATGCTTGATGATTTA 373237 28 100.0 32 ............................ AAAAACAGCTAACCCGCAAATGATGCTGTTAG 373177 28 100.0 32 ............................ TCTCAGACTGCCATTGGCTAAAGCCTTGCTCA 373117 28 100.0 32 ............................ GCAGCAGAAAAAAGCCAAGCGCTTGCGGATAA 373057 28 100.0 32 ............................ GACAAGACAAAACCCGCCATTGTGCGGGTTTT 372997 28 100.0 32 ............................ AAGGATGGTATAAGAGCCCGACGGAGCAGGAT 372937 28 100.0 32 ............................ ATCAACTGGAGCGTCAATAATGACACGCTTCA 372877 28 100.0 32 ............................ GACAACGATAACCCCACTATACAAAATGGTAA 372817 28 100.0 32 ............................ CGCAATTCATTAACCATGGTTAAAAACTCTAT 372757 28 100.0 32 ............................ TGCGCAGTGAGTCAGTTGGTATGCAATAGAAT 372697 28 100.0 32 ............................ TTCGCTGCGTTTAACCTCAAAAAACTTATTGA 372637 28 100.0 32 ............................ ACGATAAAAACCCTGTCCCTGTGTTTATGGCA 372577 28 100.0 32 ............................ GCCAAGATAGAACGCCCGCAAAGCCTCGTTAA 372517 28 100.0 32 ............................ ATCACCAGTGGCTAGCTAAACGCGAGAACAAG 372457 28 100.0 32 ............................ TAAGCCTAGTTTCTCTTTAGCTGTGCGGGTAT 372397 28 100.0 32 ............................ CATCTGGCGGAACAACTAGCACGTATTGGTTT 372337 28 100.0 32 ............................ GATCAACTGTTATTCCCGCAAACGTTTATCAA 372277 28 100.0 32 ............................ AGCGGCCGCAGGAGCTACTATCACAGAAGAAA 372217 28 100.0 32 ............................ ATACTGGGTCATTCCACGGCAACTTTAACCGC 372157 28 100.0 32 ............................ AGGCAAACAAAAAATTCTATCAGTATTCGTTT 372097 28 100.0 33 ............................ CATCAGGAGGTACTATCTGATATGGTTCATTTC 372036 28 100.0 32 ............................ CATTCAAAGTGAATTAGAAAAACTGAGGTGCC 371976 28 100.0 32 ............................ AATATAATCAACGCATCTGCGTTCACGGCACT 371916 28 100.0 32 ............................ TTATGATGACACTGGTACGTTTAGCTGTGATT 371856 28 100.0 32 ............................ TGCATCGTTAACCGACATTAAGCCCCGCAGTA 371796 28 100.0 32 ............................ TTTCATTGCTAGGTTTGCCGATAAGTATTTAA 371736 28 100.0 32 ............................ AGACTAGTCGAACCGCCCCTTCACCTTTAATT 371676 28 100.0 32 ............................ TCAATCTAGGGCAAGGTGATATTGCTGCGATT 371616 28 100.0 32 ............................ GCCCACTTTCAATTCATTAAGTTTTAAAAATT 371556 28 100.0 32 ............................ TAAACGTGACGTGTTACTGCCAAAGTGGTTGC 371496 28 100.0 32 ............................ TTAAAAGATTAAGAGCTGCTTTGCAGTGATGA 371436 28 100.0 32 ............................ ATCAAGGGAACGCATAAAGACGCTTTCTGATT 371376 28 100.0 32 ............................ TAAAGGTGGAATGTGCGCAACATGTAAAAATA 371316 28 100.0 32 ............................ TACCAATACAACAAGACGAGGGTCTGAACGTA 371256 28 100.0 33 ............................ ATTCAATGTATGTCGCCCAGCCCCGTGGCTTTT 371195 28 100.0 32 ............................ GCACACATGGCTATTTGGCTGCGGTGGTAGCT 371135 28 100.0 32 ............................ ACCAGCTGGAGGTTCGCTATCATGCAAAAAAG 371075 28 100.0 32 ............................ TCCAAAAATAAGCATTGGCACTAGCTGCACCA 371015 28 100.0 32 ............................ AGATGGTGAGAATATTCTCATAGGCTGCCACT 370955 28 100.0 32 ............................ GTAGTACGTACCACCATAAAAAACCCCTCCCG 370895 28 100.0 32 ............................ GTCCCACAGCGATGCGCCTTGCTCTAGTCTAT 370835 28 100.0 32 ............................ TGTAGGGATTTGAGTATTGATTATTTCCGCTG 370775 28 100.0 33 ............................ CGCAAAAAAGACCAGCACCACAGCCACAACAAA 370714 28 100.0 32 ............................ TATCTGAGTTGCCAACGGAAAACATGCCATTT 370654 28 100.0 32 ............................ TTATAGCTGACGGACGTATTTTGCAGGAAATA 370594 28 100.0 32 ............................ TTGCTCATTAAATACTGGCTTACCATCTTCAA 370534 28 100.0 32 ............................ TTGGACAAGCTAGGTTGTCAGGGTTTAAAAAC 370474 28 100.0 32 ............................ ACGCAGCAGAATCCGTAAACAAGCGCACAAAG 370414 28 100.0 32 ............................ TGCTGTGCACAGGTATGGCTTCGCCTTAAATC 370354 28 100.0 32 ............................ TAAAGGTGGCATGTGCGCAACATGTAAAAATA 370294 28 100.0 32 ............................ AATGGCGCGTCACGTTCACCTTGGCTGAATAT 370234 28 100.0 32 ............................ GCCTTGGGTGATTGCGGTAAATGTAAATCGTC 370174 28 100.0 32 ............................ AACGGGCTAGCCATTGGCGGGGGCGCGGCTTG 370114 28 100.0 32 ............................ CAATAAGACCATTGCTTTTACAATAGCAGTAG 370054 28 100.0 32 ............................ GCCAAGGTCGAAATGGCCAACGATGCCATGTA 369994 28 100.0 32 ............................ TGTACCGCTATCTGTTGACCCGCTCGAACCGT 369934 28 100.0 32 ............................ GGCCAACAGTTCAAACAAACATTGGTATTTTT 369874 28 100.0 32 ............................ AGCAACCCGTTTTTATACCATTGCAAAGTGTC 369814 28 100.0 32 ............................ TGACAATGTAGTGATTGGTGTTGCCAGCTGCA 369754 28 100.0 32 ............................ TAAAAAGATTGAGCATTGGATTAAGGGATATA 369694 28 100.0 32 ............................ GTAATGGAATACGCCGTGCAATACGTCAGCAA 369634 28 100.0 32 ............................ TTTTTAAATCAATCATGATCATTACCCTCTTT 369574 28 100.0 32 ............................ GGCCAGCGCATACATAATGCAATTTTCCAGAT 369514 28 100.0 32 ............................ CGTAAGCATTGGATATTTTGTCTTAGAGCCTC 369454 28 100.0 32 ............................ AACCAATAGAGTACGCATCGCAAGGCGAGCAA 369394 28 100.0 32 ............................ ATCTGAACATATACACCTCAATACGATACTGA 369334 28 100.0 32 ............................ GCCAATACAGGCGCAAAGATTGCGCTTTCGGT 369274 28 100.0 32 ............................ GAACGTGCATGTCGCTTTATGCAAAAGCTGGT 369214 28 100.0 32 ............................ TTTGGCACCAAACCAGACCACCAAGCGGTTAA 369154 28 100.0 32 ............................ AGTCATCACAGGCATGCGCTTAACCTGGCGAA 369094 28 100.0 32 ............................ AAAGCATCCGTGCTTCCTGATATGGTGCCATT 369034 28 100.0 32 ............................ ATTAAAAACACAGCAACAAGAACAAATGGGCA 368974 28 100.0 32 ............................ ATTAGATAACTGAAAATCATCAATAATGTATT 368914 28 100.0 32 ............................ GATATAATCAACGCATCTGCGGTCACAGCACT 368854 28 100.0 32 ............................ GCAATGTTGATTTTGGTGCGGGCAGTGGTTCA 368794 28 100.0 32 ............................ ATAAGCTGTCATTGTGAAGTGGCGAGGAAAAG 368734 28 100.0 32 ............................ TTTAACATGAGTCATCCGGTAATCATAGCGTT 368674 28 100.0 32 ............................ ATGCATGTATAGAATTTAACATCGGTAGCTTG 368614 28 100.0 32 ............................ TTCTAGTGCCAAGTGCTTAGTGACCTCGCTGG 368554 28 100.0 32 ............................ AGAGATGATGATTGGCGGGATTATGGCAACGG 368494 28 100.0 32 ............................ ATGTAGCCCGAAACAATAAACGACGCATGAGT 368434 28 100.0 32 ............................ CGCAAAAAGCTATGCGGTCGGCCTTGACTTGA 368374 28 100.0 23 ............................ CAAGGGAAACGGCAATTTAGCCA Deletion [368324] 368323 28 100.0 32 ............................ TACTCAACTATATTTAAGTTCTCCCAAGGGAA 368263 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 137 28 100.0 32 GTTCACCGCCACACAGGCAGCTTAGAAA # Left flank : ATAAAGTCGATTAAGCCTGTGCCAGAAAAGGTAACACAAGTTGCTTTTGTCAGGCAGCAAGTTAAAGGCGAATCTCGAATAGAAAAAGACATGCTGAGTAAGGCTGAGCGTTGGGCAGAAAAATCAGGGCAACCAATTGACACTTGTTTAGTTGAGCTTGAAAAAAGTAAACCCAAAGCAGATAACTCATTACCCTTTATTTGGTTAGAAAGCCAAGAAACTAAACAGCGTAATGTATCGGATAGTCGTAAATTTCCACTGTTTATCAAAAAGGTAGAGGTTACTGAGCAACAAGTTGGAACGTTTAATTGCTATGGTTTAAGTGCGAATCAAAGCAATAAAGAAAACCTGGCAAGTATTCCCCAGTTTTAACCTTTATTTTTGTTCTTTAAAAATTAGAAACTAAAACAATAAGTTACAATTTGCTGTGAAAAGTAGGTAAAAATTCATATTTTACCTTAACAGCTTGTTGTAACTTATTTTTTGCATGATATTCTATT # Right flank : AAGAGTGATTTCATATTTTTACATTGCCACTACCCCCAGTGTCAGGATATTTGCTAACAGATACAAATTTCATATGAAATATTGGTGAGTATTTAGATTTACTTTTGCTACTACATAATTGTCTCGTAAGTGTTAAATCTGATTCTTTTTGGTTACGAAATACGGATTTAGTTTTGTACAGACAACTATTATTTAACATGTCCAGGTGTAAGGATTAATCTTTATTAATATACTGAAAATAAACCTCTTTTACTATTGACAAGAAATATTAAATTTGTAAAATTCTTTTGATCTTTCTTGGTTATATACATATATACCAAGAGCTAACCCGACCCCATGCAGGGTCTGGGTTAATTAAATTCTAGTGTTTTTTGCTAGAATTTGGTAAAGCAAAAAGAGCTTTCATTGAGATCAATAAAGAGCTTTAAAAAGCTTTTTTGAGATCAAAGAATAGAGGCGCAAAATAAATTTTTTTATATTTTATTGACGACAGTGTTCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //