Array 1 7-156 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCSU01000001.1 Corynebacterium humireducens NBRC 106098 = DSM 45392 strain NBRC 106098, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 ............................ CCAGTGCACGTTCGAAGGCTCTGGTCTGGCCGG 68 28 100.0 33 ............................ CCCGGGGGCGGATGTCGGGCAGGCTCCGGACCC 129 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 GTGCTCCCCGCGTCAGCGGGGATGAGCC # Left flank : CACTGCG # Right flank : CTGAGCTTATCCGCAGGGCAACCGGTGGCGTTTTGTACTGCGGGGATGAAGCCCCGCCGGCTTCCGCTTAACTCGCGGCCCAGATACTCCCGGTATCAGAGGCTGGCCGACAAAACCTCAGCCTTCCAAGCTGAAGACACATCCGACTTCCGGCATCTCCGAAGAACTACCGGTTCCAGGATCGCCCCGGGCATCAGTACCCCGGAACGCACGTGTCCCCGGCACCTCCAGTGGAGGGTCCGGGGACACGTGCCTCGGAGTCAGGTGGTTAATGCTGGGCGAATTACATCGCCGACATGATCCAGATGACTAGGGCGATGATGGCCAGGATGCCGACGATGGTCCAGATGAGTCCGCTACCGCGCATGATGTTTCTCCTTAAGAATTGTCAGTTGTACTTTCCACTCTTGAGAGTAACAGTGATCACATTAGTGGGTATGAATTTGGACGGTTGCTGATCGGTAACAATTCGCCTACCGGACCGTTACCGCAGTTAGATC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTCAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTCAGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 39-3304 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCSU01000034.1 Corynebacterium humireducens NBRC 106098 = DSM 45392 strain NBRC 106098, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 39 28 100.0 33 ............................ CTCGAGGATGTCGCCCTCGCACTCCTCGCACAC 100 28 100.0 34 ............................ AGCGGCGGCGGACCGGGTGGATTCCGGGGCGCTG 162 28 100.0 33 ............................ GCGCACCCGCCGCGGCCTGCTCATCCACAAGGC 223 28 100.0 33 ............................ GAAGTCCACCATTTATGAGTGGATCGAGGCCGG 284 28 100.0 33 ............................ CGCGCCACCTCAGTCCAACCCCGCGAAAACTGG 345 28 100.0 33 ............................ GTGTCAGGCTATCGAAGTGTCTGAAACTAGCGG 406 28 100.0 33 ............................ TCACCCGACGTGACACCCTGCTCCGTGACCTCA 467 28 100.0 33 ............................ GGCGTCGTCGATATACCCCTCGGGGTCGAGGAA 528 28 100.0 33 ............................ CTGGTAGGCCGGCAGCGGATCATGCTTCCGGCG 589 28 100.0 33 ............................ CGTCAGCAGATCCCCCTTCAGGTGGCCGACCGG 650 28 100.0 33 ............................ CCTGCTGGCCGGCATCGACGTCGACAGCCACGA 711 28 100.0 33 ............................ GCTGCGGGATCGTTGGCGGCCGGCCATGTCCCG 772 28 100.0 33 ............................ CCCGGCACCTGCCGGACCCTCTGACCAAGCCGC 833 28 100.0 33 ............................ CACCGTCCCCAGGCTGGTTGATGGTGTCATGTC 894 28 100.0 33 ............................ GGTGGTTGCGCTGCGTGTTGTTGCGCGTGGCTA 955 28 100.0 33 ............................ CAGCCTTCGACTTCACAGCCGGGCGCGCGTAGA 1016 28 100.0 33 ............................ GACGGCGATGGAGCCGGAGTATGTCCTCAACCC 1077 28 100.0 33 ............................ CCCCTATGGGGTGTGTGACGAGCACACCCCGGC 1138 28 100.0 35 ............................ ATAATCCCGAGGCGACGCCCCGCCGACGACTCCAG 1201 28 100.0 33 ............................ CCATCCACGAGCGCTATATCAGCGGGGTCCGCG 1262 28 100.0 33 ............................ GCCGCTTCTCCTCCGCCGCCGCCCGCCGACGCT 1323 28 100.0 33 ............................ GCTCTGTCGCGCTATCGGAGACGGACTGGAAAA 1384 28 100.0 33 ............................ CAGTATCACACTGTTACTACCGATTGAAAGTCG 1445 28 100.0 33 ............................ CTGGCCCTGGCGACGCTCAGCACGCTTCACAAG 1506 28 100.0 33 ............................ CTACGGCCTCGTAGTCAATCTCTGCGGGGGTTG 1567 28 100.0 33 ............................ CAGGACCCGGCGGTGAGTCGTGCGCATCGTCCG 1628 28 100.0 33 ............................ CTCGGAGGCTCTGATGCAGCTGGACGCGGAGGC 1689 28 100.0 34 ............................ GTCGGCGTGAGCCTGTGTCAGCGTTTGCACCATG 1751 28 100.0 33 ............................ CCGAGCCAACACCCGCCCCGTCATCGACATCCT 1812 28 100.0 33 ............................ CGATCTGAGCGGCGTCCTGCTGCAGCCACAGCA 1873 28 100.0 33 ............................ CGTCGCAACAGCGTGGTCGTTGTAGGGCTGGAT 1934 28 100.0 33 ............................ CGCAGACGTACCCTCCCGGACTTCCCGGTTAGT 1995 28 100.0 33 ............................ AACTTCGTCCACGTTTTTCACGGACTGCTTGAT 2056 28 100.0 33 ............................ CCCTCGATGGTGAGGGTGCCGTTGGCGTCGGCT 2117 28 100.0 33 ............................ CGCGGGAGTGGGGGCATCCTCCCCATGTACCAA 2178 28 100.0 33 ............................ GCGAGCGACCGAGGTCCAGCGCCGCCTCGGACG 2239 28 100.0 33 ............................ GTCCGCGGGGGCGGTCAGCTTGATCTCCTTGCC 2300 28 100.0 33 ............................ GCGGTCTTTGTATACGCCATTATTTCCCCTCAT 2361 28 100.0 33 ............................ TTGTAGGCATATCAGTACTCCTTAATTACTCGG 2422 28 100.0 33 ............................ CTCCGGCCTCAGCTCCGGGTACTGCTCCCACAG 2483 28 100.0 33 ............................ GCGGTGGCGAGGTTGTCGGGGGTGCTGGGACCG 2544 28 100.0 33 ............................ GTGGGGGGCCGGGAACGCGCAATACCTGCGCGA 2605 28 100.0 33 ............................ GGAGCCGCCGGAGAAGCGTGGCCGCTGGGTCGC 2666 28 100.0 33 ............................ GGGATGCGGCTGCGGTGGCAATCGCGGTCGGCC 2727 28 100.0 33 ............................ CACCTACGACTCGGAAAGTCCTACCGCATCCGC 2788 28 100.0 34 ............................ CAATCAAAAAGGAATCCGGGGGGATTACCGACGT 2850 28 100.0 33 ............................ GGCGAGTAGGCCTTCGGCGTTGTCGATTTCCAC 2911 28 100.0 33 ............................ CCAGGCCCCTCGGGTGCCTCATGGAACACATGC 2972 28 100.0 33 ............................ CGCCCCCGGCGTCTCGCGCTCATTCCCGAAACG 3033 28 100.0 33 ............................ GATGGCGGCGGTCGCGACTGGCTTCACAGTGGC 3094 28 100.0 33 ............................ CCGGGGCAGGCATCGGCCCGGGAACGGCATCCA 3155 28 100.0 33 ............................ GCCCCTCGCCGCTGTTGTTGGCGGTGCGGCTGC 3216 28 100.0 33 ............................ GGCGCTGGAGGAGCTCGACGCGGCGCGGGAGAA 3277 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 54 28 100.0 33 GTGCTCCCCGCGTCAGCGGGGATGAGCC # Left flank : AAGCCCACTTGAAGCAGCTCGCAATAAGGGGTTCTCAGG # Right flank : CAGGTGCACTCGGACGAGTCCACCGGCCACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTCAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTCAGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9466-165 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCSU01000028.1 Corynebacterium humireducens NBRC 106098 = DSM 45392 strain NBRC 106098, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 9465 28 100.0 33 ............................ GCAACTGGTATCCGAGGATCTTCTGGATCTCCG 9404 28 100.0 33 ............................ GTGGGTGGTCAGCAGCCAGTGGCCCGCTGTCCC 9343 28 100.0 33 ............................ GCGGTCCTTCTGCGCCGTGGTCGGCGGGTCGTT 9282 28 100.0 33 ............................ CGGGTCAAACCTGCTCACCCCCTTGCTGGTGTT 9221 28 100.0 33 ............................ CTGGTCGCCGGGGTTAGTCGTGCCGCGGCGCTT 9160 28 100.0 33 ............................ GGACTTCACGACGACCGCGCCGGGCTGTCTGTC 9099 28 100.0 33 ............................ GCGTTCAGGGAGTTCGTGAGGTCAGCGTTCGAG 9038 28 100.0 33 ............................ GCACACCTGGCTGACCCCCGCCGAGCAGACCGC 8977 28 100.0 33 ............................ CCTGAACGGAGAAGCAGCATGACCGCCAGATCC 8916 28 100.0 33 ............................ GGCCATCAACACCCGCCAGCTCTCCATCCCCGT 8855 28 100.0 33 ............................ GAACCTACGTGTTCTTGTCGGCGGGGTGGAACC 8794 28 100.0 33 ............................ CCCCATCATCCAGCTGGCGAACTCGGGGTTGAG 8733 28 100.0 33 ............................ GAGGTCCCCGAGGAGGCGCTTCTGGGAGGCGTT 8672 28 100.0 33 ............................ TCACCGCCCGAGGCGCACACCTCCACGCCCCCC 8611 28 100.0 33 ............................ CGGGGCGGGCAGGTGGGGCGACGGAGAGCAATT 8550 28 100.0 33 ............................ CCACTCCTGCAGACTGTCCGCCAGCTCACTGTC 8489 28 100.0 33 ............................ GAAGCGGGCGACGAAGTCAGCGTGCGACTTCTG 8428 28 100.0 33 ............................ GCACCATCCAGGTCGGTGAAAACGGTATCCGCC 8367 28 100.0 33 ............................ ATGATCCTCCCGACGGATGCGGATACCGACCTG 8306 28 100.0 33 ............................ TGTAGTGGGTGAGGCTGCTGCAACAGCCCACGA 8245 28 100.0 33 ............................ GGACATGGCCCTCGAGGTGGAGGAGCTGCGTCA 8184 28 100.0 33 ............................ CCGCTGCTTATCCCGCTCACGCTGCGCCGCCTC 8123 28 100.0 33 ............................ GGTTGGCCTTCATCCCCTCAACCTCGTTGAGGC 8062 28 100.0 33 ............................ GCGCAGGGCAGGCGGCCACACGGTGAACCTGAC 8001 28 100.0 33 ............................ TCAGTCGTCATCGTCGTCGCGATGTCGTGCAGA 7940 28 100.0 33 ............................ CGCCCCCAGCACCCACTGTGTTTCATCCACCCC 7879 28 100.0 33 ............................ CTCCATGCTCTCCCTGTCGAATGACCCCTCCCT 7818 28 100.0 33 ............................ GAAGGCGACGGACGCGGCCGGCCGGTCGATGGG 7757 28 100.0 33 ............................ CACCTCACCCGTGCCCGGCCCGCCGTGCTGCAG 7696 28 100.0 33 ............................ TCGGGGTGCCGTCCAGATTCTCCACCACCAGGA 7635 28 100.0 33 ............................ TGAGCGGGGCGTAGGACCCGTCCAGGTCCAGGA 7574 28 100.0 33 ............................ GGCTCTCGGGTCAGGCTGGAGCCGTAGGTCATG 7513 28 100.0 33 ............................ GCTCATCACGGCCGTGCCCGTCCCCCAGGTGGC 7452 28 100.0 33 ............................ GCTCCATCGTGGATTCGTTAAGCCAGTAGTCAC 7391 28 100.0 33 ............................ CAAGGACTCGGTGTTCACACTGTGCGCGGAGCA 7330 28 100.0 33 ............................ CTGACTTCCACCACTTCTACGGCTGTGACCTCG 7269 28 100.0 33 ............................ CTAATGTACTTCGGCGCGCTCATAATTACTGTC 7208 28 100.0 33 ............................ GGACAACCAGAATGGCTAACCCGAAGGGCACCC 7147 28 100.0 33 ............................ GGAGATTGTTGCTGTGGTCACGGACTACGCGGG 7086 28 100.0 33 ............................ CTCAAAGAAGGCATGGGCCTATCCCACACCAGC 7025 28 100.0 33 ............................ CTGGCCGTTGTCCAGCAGGCTGGCGATAGTGCG 6964 28 100.0 33 ............................ CAGGCCGATTGCGTCGGAATGTGGGCGCATGAC 6903 28 100.0 33 ............................ CGAGGTGTGGCAGACCCGGCCCGCGTCCGCGCA 6842 28 100.0 33 ............................ CTGCTCGGGCCTGACGACTATCCCACCACTGGA 6781 28 100.0 33 ............................ GGAATCCTGGATGAAATACAAGCCGCATGACTA 6720 28 100.0 33 ............................ GCACACCCGGCCTTTGCCGTTGTGTTGGGGCCG 6659 28 100.0 33 ............................ CTCAGCGGCGTCGGCGATCGCCACCTGGGAACA 6598 28 100.0 33 ............................ CGGTTCCTATGACACGTATATCAACGGGGCCAA 6537 28 100.0 33 ............................ TCTGGCCTAGCCACTGGTGGGATTGGGTGGCGT 6476 28 100.0 33 ............................ CAGTGGCGGGCATGCGTTCTATGTCATGTCCCA 6415 28 100.0 33 ............................ CGTTCGACAGGTTTGGCCACTGCGATTCCGGCA 6354 28 100.0 33 ............................ GTATGGCAGGGAAAGAGGTCGGATACCTCACCG 6293 28 100.0 33 ............................ CGAGGCCGACATGTCTCTACACAAGATTACGGG 6232 28 100.0 33 ............................ CCCGCCTTCGTGGTGGCGACGATCCGTGCTGCT 6171 28 100.0 33 ............................ CTGAAGCGTCACGGAGTGGTCGGACTGAGTGAT 6110 28 100.0 33 ............................ CAACCCTACGGCACGCAACCGAGCAAGGTTGAC 6049 28 100.0 33 ............................ CTCATCATTGGGCTTAGACTGCTGCTCAACATC 5988 28 100.0 33 ............................ CCCGTGCCGAATGAGCATGTCGCCACCGTCGAC 5927 28 100.0 33 ............................ CGACAATTCCGGGTGCTCGCTATCAACAACAAT 5866 28 100.0 33 ............................ GAAATCATGCCCCTTATTAATCAGCGACACCTT 5805 28 100.0 33 ............................ CGCGTCCATGGTCACTGGCCTGATAGGTCCCCT 5744 28 100.0 33 ............................ CAACTCGGTGGCCACGGGCTCGACAGCGACGAG 5683 28 100.0 33 ............................ CACCGGTGACGTGCCCCTGTCGCCGTCGGTGTC 5622 28 100.0 33 ............................ CCGCCTGCCACGGCCTCCGCCCACGTTGCCGTG 5561 28 100.0 33 ............................ CTGTTCGCCGTCTCCGAGGTACCCGCGTCCGTG 5500 28 100.0 33 ............................ TTAATGTCCGATTGAGTCAGGTTCGGCACCCTG 5439 28 100.0 33 ............................ CTGGGATATCAACCAGCGGTCCATCGGTGTCGA 5378 28 100.0 33 ............................ GTTGATCGCGACGCCGTCCGGGGAGAGGTAACC 5317 28 100.0 33 ............................ CCTCGTGCACGCTGGTACGGAGGTTCATCATCG 5256 28 100.0 33 ............................ CGCGGTGGTCTGGCCGTCACCAGCCTTAGCCGG 5195 28 100.0 33 ............................ CAGCACAATGTGATCGAGGTCCTTGACCATCGC 5134 28 100.0 33 ............................ CGCCCCGATACGGTTGCCGAGGTCCATCGTCGT 5073 28 100.0 33 ............................ CATGTTTCTCATGTTCGTCACCTGTGACGTATC 5012 28 100.0 33 ............................ CAGCACTATCGCGATGGTTACCGCCAGTGTTAA 4951 28 100.0 33 ............................ CCGTGTCTGGACAGACCGGCCTGCATCAGCCCA 4890 28 100.0 33 ............................ CATTCCCGTCAGTCAGCGCCGCGCAGTATCGGA 4829 28 100.0 33 ............................ CTTCTCCGGATCGGAACCGAGCAGATCGATGTT 4768 28 100.0 33 ............................ GAACGGCCGGAAGGCGTAATGCTCACTAGCCTC 4707 28 100.0 33 ............................ CTCATTCGCCGCCTCCGCAGCCATAGCTGCGGC 4646 28 100.0 33 ............................ CTCAGCGAGGGTCACCGGGCCTGTCTCCGGCAC 4585 28 100.0 33 ............................ GGCGAACGCCGGCGCGGATGCCGGGGATGCCCC 4524 28 100.0 33 ............................ CTGCTCGGCGCTGACTGACGGGAATGTGCGTCT 4463 28 100.0 33 ............................ CAGCCGTAGAACATACTCTGCGCCGACCCGCTG 4402 28 100.0 33 ............................ GTCGGCGTCGGAGGAGTAGCGCGTGCCGGACAC 4341 28 100.0 33 ............................ GGCCAAGGAGCAGCCCGCCGAGGCCACCGCCGA 4280 28 100.0 33 ............................ CTCATCATCGGTCTTCGCCTCACGTTCAGCGAG 4219 28 100.0 33 ............................ GGTGGTCCGCCGTACCTCGTCGGGTGATGTGCT 4158 28 100.0 33 ............................ CTGCCCGTCGCTGACGACGGTGCCTCCGATGGA 4097 28 100.0 33 ............................ GGTCGCGCGCGCGCACTGTGCCCGCGTCCACGT 4036 28 100.0 33 ............................ GGCAAGGCTTTTCAAGGCGAAACCCCCGGGTGC 3975 28 100.0 33 ............................ CGGGTAGTCCGGCTGCAGAACGCCCGCGACTAC 3914 28 100.0 33 ............................ GCTGGTCCGCACGATGGGTGTCACCCCGGAGAC 3853 28 100.0 33 ............................ GTGCCCTGTCCATGTCCGTGTACGAGCAGAAAA 3792 28 100.0 33 ............................ CGGTCAAGCCGCTCGCACTTCTCGAATGGTTGG 3731 28 100.0 33 ............................ GAATTGCAGACCAGTATCAATTTGGCCTTCCAA 3670 28 100.0 33 ............................ GATTACGGCACCTAAACAAGAATCCGGGGGGAT 3609 28 100.0 33 ............................ CCGACCCTCGCTGTCCATGGCGTCCCACGCCTT 3548 28 100.0 33 ............................ CAACACCGCTGCCCTCGAGAACGGGGAGACCTC 3487 28 100.0 33 ............................ GGCCATGTACCCGCAGCAGAAGGAAGCGTGGTC 3426 28 100.0 33 ............................ GGACAAGGAGATGCAGGCGAAGCTGGAGACGAT 3365 28 100.0 33 ............................ CCGGACACGGAAACGCCGGACACGGTTTCCCCG 3304 28 100.0 33 ............................ CCGCGATCTTGATGCGGTCCGTCAGCTCGCGAG 3243 28 100.0 33 ............................ GCTGCGCGACCAGATCCCACTGCTCTTTTTGCA 3182 28 100.0 33 ............................ CACCTCGGGCACGCATCCCTGCACACCACACAG 3121 28 100.0 33 ............................ CAACAACACCACGAGGTCGACGATTCAGCCTCT 3060 28 100.0 33 ............................ CAGAGCCTTAAACTGATCGAACGGGAACATTTC 2999 28 100.0 33 ............................ GTGCACCCACGGACGCGCGCCCTTCAGATTCGA 2938 28 100.0 33 ............................ CGTAGGGCACCAACCCCCCGAGCCCAGGACCAG 2877 28 100.0 33 ............................ GGTCTTGGAGCGGGGCTTGCCGGCGGGGTCACG 2816 28 100.0 33 ............................ CCGTTCTACGACGCTGCCGGCAACCCGATTTAG 2755 28 100.0 33 ............................ CCCGAACGTGGGCACCCTGAACATGCTCACCGG 2694 28 100.0 33 ............................ CTGGTGGGTCGACGGGACGGATACCGGCGTGCG 2633 28 100.0 33 ............................ GATGTCCCAGTCCGTCGCTTCATCACCGACTGG 2572 28 100.0 33 ............................ CATGTAGTACATGTCCGTCACCTGTCCGGTGTC 2511 28 100.0 33 ............................ CCGGCGCTTCGGCACTTTGATCTGCACATCAAA 2450 28 100.0 33 ............................ TCATCGTCCACACCACCGAGAACACGCTGGGCA 2389 28 100.0 33 ............................ CCCGCAAAGCCACGCCGCACGCCCATCACGGAC 2328 28 100.0 33 ............................ CGGCATATCCTCGCCACCACCGCCGTAGGGGGA 2267 28 100.0 33 ............................ GAACCCCCGGGTTCTCCTGGCCCCGAGGTGCTG 2206 28 100.0 33 ............................ CCGGCGGCGGCGCGTACTCAACCGGGAACAAGC 2145 28 100.0 33 ............................ CCACCGAGTCCCCCGGCCCGGGCCCGGTGGCGC 2084 28 100.0 33 ............................ CCGCGCCCGTGGCTATGACTCACAGTGGCGCCG 2023 28 100.0 34 ............................ CCCCGACGGCACACCCTATGACCCCCCCCGAGGT 1961 28 100.0 33 ............................ GTGGGTGGATGATGGGCGGATTACCAAGACGAA 1900 28 100.0 33 ............................ TCATGCCCCCGTATGGGGGTGGCTAGCGGTAGG 1839 28 100.0 33 ............................ GTCTGCCCAGGAAACAGGACAGACGACACCGAA 1778 28 100.0 33 ............................ CATAGGGCACCAACCCCCCGAGCCCAGGACCAG 1717 28 100.0 33 ............................ GACGCTGGCTGAGGGCCGTGACGTGCGGAAGGC 1656 28 100.0 33 ............................ GTACCTGGGCGATACGTCGGTGGCTGCTATCGG 1595 28 100.0 33 ............................ CCGACGTGACGCCACCCGGCAGGCCGGACGAAA 1534 28 100.0 33 ............................ GATCACACCCCCGCCCGCAGGCGAGGACGCGGA 1473 28 100.0 33 ............................ CACTACGGGATCGACCTGTCCAGTGGGGTGCTC 1412 28 100.0 33 ............................ CCGCCACATGATCAGTGCTGCCGTAGGTGGGTC 1351 28 100.0 33 ............................ GTACCTGGGCGATACGTCGGTGGCTGCTATCGG 1290 28 100.0 33 ............................ CATCCACTCCGAATCCTCGGAGCCCTTCGGCTT 1229 28 100.0 33 ............................ GGGCTTCAATAGCCTGTCAGCAGCCTTCTTCCG 1168 28 100.0 33 ............................ CTAGATCGCCGTTCACGTCCTGACCGTCGCAGC 1107 28 100.0 33 ............................ CGCGGTCGCATCCTCTGACTTAGAGCAGTCAAG 1046 28 100.0 33 ............................ CCACCACTACGCCACCGTCACGGTGTAGGTGAT 985 28 100.0 33 ............................ GCGGTTGATGAGGAATGCTGCGACGGTGGCGAT 924 28 100.0 33 ............................ CGCGGACTTCACAATCCGCGCCTTGACCGCCAG 863 28 100.0 33 ............................ CTCATGGACGCCCAGTCCGCAGCCGACACCCTC 802 28 100.0 33 ............................ CCGCAGTGCGCTGTGGGTGCCCCAGTGCACGTG 741 28 100.0 33 ............................ GATGTGCCCGAAATCATCGACTCCAACCAAATC 680 28 100.0 33 ............................ GGGTTCCAGGAGATGCCAGTCCTGGCGGTGCGG 619 28 100.0 33 ............................ GCAGATCGCCGAGGCGGCCGGCATGTCCCGCCA 558 28 100.0 33 ............................ CACCGGCTTGATGCCGTCGGTGTAGACGGTCTT 497 28 100.0 33 ............................ GCCTGTGAATACCTACACTGCGAACGCCGAAAA 436 28 100.0 33 ............................ CGTCCAGCTCGTGCGCGCCAGGGATAAAATCGC 375 28 100.0 33 ............................ CGTCGAGTCCGGCGGCAGTCCGTCAATGGTCAA 314 28 96.4 33 ........................C... GAAACTAATCAACGGCTTCTCCAATAATCGCCC 253 28 100.0 33 ............................ TAGGCCGGGGCTTTTTGTTCGCGTGGACCAAGG 192 28 96.4 0 ...........................T | ========== ====== ====== ====== ============================ ================================== ================== 153 28 100.0 33 GTGCTCCCCGCGTCAGCGGGGATGAGCC # Left flank : ACCCGGATTCGATTGACGTCGAGCTGATGCTCTGGAACGAGCTCGAGGTCATCGCCGCCGGCATCAACTGGGCCGAACCGGAAGGAATCGACCTCTGATGATCGTCCTGGTCGTGACCGCCTGCCCCGCAGGACTACGGGGAGACCTGACCAAGTGGCTATCGGAGATCTCCCCGGGAGTATTCGTTGGCCGCCCCAGTGCCCGCATACGAGACCTTCTGTGGGAGCGAACTGTCGAACTGTCGAAGGACGGCCGCGCTCTGCTCGTCTACAGCACCAACAATGAGCAGGGCATGGAGTTTCGCACACACCGACACGACTGGGAACCCACCGACTTCGATGGCCTCACTCTGATGGTCCGGCCCTCCAAGAAGAAGTTCACCCGCCGGACCGGATGGAGCAAGGCCAGGCAAATACGAAAAAGCCGTTATTAGCGCGATCGACAAACTACAGTTGTATCTGCACGACGGTTTTCCATTGGAATGGTGCAGCTCAGCCAGT # Right flank : TGGGCTTGCCCGCAAATCGTGGACAAATAGTTAAGCGGCTACCAGCGCCGCAGCTGGCTGATCAAGCGATAATTCATAGGCCACCGGACTCAGAAAGCCGATGGCGGAATGCCGGCGGTAGCGGTTGTAGAAGACCTCGATCCACTCACTGACACCGTCGTAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTCAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTCAGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //