Array 1 8917-10088 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAZ01000042.1 Salmonella enterica subsp. enterica serovar Typhimurium strain A692 NODE_42_length_37978_cov_72.296522, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 8917 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 8978 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 9040 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 9101 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 9162 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 9223 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 9284 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 9345 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 9407 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 9510 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 9571 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 9632 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 9693 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 9754 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 9815 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 9876 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 9937 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 9998 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 10059 29 96.6 0 A............................ | A [10085] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5313-6866 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAZ01000090.1 Salmonella enterica subsp. enterica serovar Typhimurium strain A692 NODE_90_length_14035_cov_62.100429, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5313 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 5374 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 5435 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 5496 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 5557 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 5618 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 5679 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 5740 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 5801 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 5862 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5923 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5984 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 6045 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 6106 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 6167 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6228 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6289 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6350 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6411 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 6472 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6534 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6595 29 96.6 32 ..........T.................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6656 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6717 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6778 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6839 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //