Array 1 210376-208636 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPA01000026.1 Salmonella enterica subsp. enterica serovar Hadar strain ABBSB1020-2 NODE_40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 210375 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 210314 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 210253 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 210192 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 210131 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 210070 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 210009 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 209948 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 209887 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 209826 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 209765 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 209704 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 209643 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 209582 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 209521 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 209460 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 209399 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 209338 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 209276 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 209214 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 209153 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 209092 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 209031 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 208970 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 208909 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 208848 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 208787 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 208726 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 208665 29 100.0 0 ............................. | A [208638] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 228915-227057 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPA01000026.1 Salmonella enterica subsp. enterica serovar Hadar strain ABBSB1020-2 NODE_40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 228914 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 228853 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 228792 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 228731 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 228670 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 228609 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 228548 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 228487 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 228426 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 228365 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 228304 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 228243 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 228182 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 228121 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 228060 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 227999 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 227938 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 227877 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 227816 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 227755 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 227694 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 227633 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 227572 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 227511 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 227450 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 227389 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 227328 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 227267 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 227206 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 227145 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 227084 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //