Array 1 3450167-3447799 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021265.1 Legionella pneumophila subsp. fraseri strain Los Angeles 1 (D-7696) chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3450166 28 100.0 32 ............................ AGTACTTGATTGTATATCCATCAAAGCTCGTT 3450106 28 100.0 32 ............................ GGTCATTTTCCCCTATTGCTGGGTCTACTCCG 3450046 28 100.0 32 ............................ CGTAACCCGGTGGAAGGTAGTCCCTTCATGGC 3449986 28 100.0 32 ............................ TCAAGGCGGCACGCCATGTTGCCCCTCGGCAT 3449926 28 100.0 32 ............................ AGATAAGTATCCTTGGACTCGTAGGAATGGTA 3449866 28 100.0 32 ............................ AACTTACGTTTACCATTAGCAGTCAATTGAGC 3449806 28 100.0 32 ............................ TTGGCTAAAAAGATTTTACGTAAGCGATCTGA 3449746 28 100.0 32 ............................ ATTGACAGTCAGTTGAGCAGAACGAAAACCTT 3449686 28 100.0 32 ............................ AGATAATCCTTCTGATTACGTCCTTTTGAGGC 3449626 28 100.0 32 ............................ TACCATTAATAACAACAAAATCACCATTATAG 3449566 28 100.0 32 ............................ TACTGGTGATGCTGCTACTGGTTCTAATTGGA 3449506 28 100.0 32 ............................ TTATGGTTCACTTAATATTAAGCATTTTCAAG 3449446 28 100.0 32 ............................ TGATAATCCTGCTGATTATGTCCTTTTGAGGC 3449386 28 100.0 32 ............................ TCCAGTTGATAGAATTAAGGCTCTTGGTGATG 3449326 28 100.0 32 ............................ ATCATACGTTGATATGATGTATTAGACATACG 3449266 28 100.0 32 ............................ ACAAGCAAATTTGGCTGCTTTTGGTACTGCTA 3449206 28 100.0 32 ............................ TCATTCAATTGGTGTTGCTATTGAGTTTTTAA 3449146 28 100.0 32 ............................ CAAACAAGTCGATAAGGAACAGCAAAAAAGAA 3449086 28 100.0 32 ............................ TCAAGATAAACAGAATCACCTTTCTGGTAAGA 3449026 28 100.0 32 ............................ TATTGAAGATATGAGGCCTGAATTTGAAGGTG 3448966 28 100.0 32 ............................ AACAAGCTCAGGAATTAAACCTGCTCTAACAA 3448906 28 100.0 32 ............................ TTTTGGGGATTGTATGTCGGCAATTTATGGTA 3448846 28 100.0 32 ............................ TTTCAATGACGTATACACACAAATATGGGCTA 3448786 28 100.0 32 ............................ ATATACTAGGCCATCACCATATACTCGGCCAT 3448726 28 100.0 32 ............................ AGCAAATATGAAACTAACACCAGAAAATTGCT 3448666 28 100.0 32 ............................ CCAGTCAATAGCCTTAGCCGGCTTTCCATTGT 3448606 28 100.0 32 ............................ TTATGGACGTTAAGGTTGTAAAGGTATTTTAG 3448546 28 100.0 32 ............................ TAATGATTTATTAATGTTGTTAATCTCTTTAA 3448486 28 100.0 32 ............................ TGTGATCAGCGATTATGAGGTAGTAGCAAAAA 3448426 28 100.0 32 ............................ TTACGTTAGAGTAGTAAATGACGAGAATATAG 3448366 28 100.0 32 ............................ AAGTACATCGTCAGCCTCAACTCCCTCTGTTA 3448306 28 100.0 32 ............................ TAAAAGTGTCCTTAAATAAAAAGTAATTGTTT 3448246 28 100.0 32 ............................ ATCTGTCACAACAATAATGGATGTTGCTGCAA 3448186 28 100.0 32 ............................ AGTAAGAATAACGGAACGAATTTGTTTCCCGA 3448126 28 100.0 32 ............................ TGAACAATCATTCCCCAAGGTTTTCGACTATC 3448066 28 100.0 32 ............................ GCCAGCGAGTCTAACGATATAGAAAAATTAAA 3448006 28 100.0 32 ............................ TATAAATTTAATACATAAGACAGTTAACCAGT 3447946 28 100.0 32 ............................ GTTGGGCGTTGTTGGTACAACTGAGTCACCTA 3447886 28 100.0 32 ............................ AAGCTTTTTTAAACTATTCTGTTGACGGGTAT 3447826 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 40 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAG # Left flank : ATCCAAAATGAGGAGATTAGTTAAACGTGGTTCTATAACGGAAAGTGAGTTTCGACAATATAAAATTAAAATGTTTTCCAATGGTTTGGATTATCCATATGCTGAACTGGTAAGTAGTTCAAACGGAAAAAGATACCGCCGATATATTGAGTTTGGAGAGCTGCTCGATAAACCAATTTCTGGCGATTTTGATCAGTTTGGTCTTTCCAAAACTGCTACAGTTCCTTGGTTTGATTAGAAAAGAGGAATTGGCAAATCTATTGAATTTGATCAGTTTAAGAAGAGAATTTTGGCTAAGTCAAATATTTTAGTCTTTTATGGAATTAAAATAAAAAATAGTCTAGGCTTGGCTATTCTCAACTTCCAAATACTAATAATTTTGGTTCCTTAAAAATTTGTTTTAAAATCAGATGATTATAACTTGATTGAAATACATTGGGTGACAGAGTAGTTTGCATATAACTTTCTGTTTTTTCTGTTTTTTTATAGTTTATAATCGA # Right flank : TATCTGCACCGTACAGCAAGCGTAGGTCGGGCCAAGGCCCATAGCCGTCAAGCTAAGGAGAACACATCAAAAATTTTCTGCATTAAAAAGGGGGGCACAGTTCTTAATTTTAGTATCTTTGTTAGCGAAAAGAGCCAAGCTGTCATGGAAACTCTTAAAGAAAGTGTTTTAAACGGTAAGGAGAATTCCAAGCTCGAACAAAATCGTTGAGTTTGGTTATTAACAATTTACACGCCTTATAAAAGGAAACTTCTCTATTATTTTGGTATCGAACCGGGGCGCATAGTAAAAATAAAAACATCATCCCAATAAACTTGCCATAGGTCTCGATGACTACGCGTGCGGATTTTGTAGTACAAATACAATCAATATGCATTAATGATTTACTTAGTTTAAAGACTAATTCAATTTGCCATCGCCAAGAATAACACTTGCATATCTCCTCATTGCCTATTTGTGTTTCAGATGTGTTGGTAATATAAATGGACCAATCTTGTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //