Array 1 8754-9454 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTVB01000002.1 Escherichia coli strain SH20c NODE_2_length_105439_cov_1.353027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8754 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 8815 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 8876 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 8937 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 8998 29 100.0 32 ............................. GCGCACCGATGCGTCGAAAAGGCGCTGGAGAT 9059 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 9120 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 9181 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 9242 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 9304 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 9365 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 9426 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8436-6760 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTVB01000026.1 Escherichia coli strain SH20c NODE_26_length_52285_cov_1.370950, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8435 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 8374 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 8313 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 8252 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 8191 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 8130 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 8069 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 8008 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 7947 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 7886 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 7825 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 7764 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 7703 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 7642 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 7581 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 7520 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 7459 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 7398 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 7337 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 7276 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 7215 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 7154 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 7093 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 7032 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 6971 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 6910 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 6849 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 6788 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATATTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //