Array 1 28776-27826 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWUY01000002.1 Staphylococcus intermedius strain 14S02204-1 NODE_2_length_896212_cov_80.7018_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 28775 36 100.0 29 .................................... CTTTCCATTGTCTTTTTAGCTTCACCAGT 28710 36 100.0 30 .................................... TTCTGAAAGAACGTATAAGTGCGCCCTTAC 28644 36 100.0 29 .................................... CCTCCACAAACCTATGATTAGGTCTAGGA 28579 36 100.0 30 .................................... ACCTAAAGGGAACATAGGCGCTAAAAATAT 28513 36 100.0 29 .................................... CTAAGCGAATGGTTTACAATGAGCGCGGA 28448 36 100.0 30 .................................... TGCAACTGACAGGCGCAGGCTGTCGAGAAA 28382 36 100.0 30 .................................... AATTATATGAACAACAAAAACAAGTCACTG 28316 36 100.0 29 .................................... TCTTTATTGTCGCTATGGTTTATGCACTT 28251 36 100.0 29 .................................... ATTTTCACCTTTACCCCATGCAGATTCAC 28186 36 100.0 29 .................................... TTTGGTACAACTAATGTAAATGAAATTGG 28121 36 100.0 29 .................................... TGAATTTTATAGCTTTTCTATTAGGTAAA 28056 36 100.0 29 .................................... GGAATTTGATTATGGAGAAGGAGATGAGT 27991 36 100.0 29 .................................... GGAATTTGATTATGGAGAAGGAGATGAGT 27926 36 100.0 30 .................................... TTTAGTAGAAGTAAACGAAGCATATACGTC 27860 35 86.1 0 .......................T...T.-.G.C.. | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.1 29 GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Left flank : TCACTCAACAAAAGAAAACATTTTGATTGTATTATTTCCGGAGTCTCACCTCGGTATTCACGATATTAAAGTATTTATGCAACTTTTAAAGAAGTATCGTTTCACAACGATCGTCTTCACCAATCATCCTTCTATCATCATAAATGAAGAAAACATATTTCTTTGTAAAAGTAATAAAGCGTGTCATGACATAGAAAAAATAAAGGAAGAATTATCGTTATTAATTCCAGAAGAAATGGTAAGTCATCAATTGACTAATATGATTGCATATCACGAATTTTTAGGTGAAAACCTTTCTGAGTTTGAAAGATATTTTAAGTTTATAAACCATTACAATTAAGTTATACTTAATTCAATGATTGACAAGTAAGTAATGACTATGTGACTTACTTTGCGATTGAGTTGGGTAAGACGATTCCTCGTTTTTTATGTTTTACTACTTCTAATAGTGTGAAGCCTCAATTCTCTCCAGAATACAGTTAAGAATTTTGAGATTTGAG # Right flank : CCCACTTTTAAATCAATTACGAACTATATTTACTGCCCTCACTATCTTTTAACTTCAATATAAAGGTATGGAGGGGCATTTTTATTTACGCGAAATGTCCACCAACGTCCCTTTTCCATCTCCATGTTATAATAGCCACAAATGCTCATTAAAACTCAAAAGAAGGTAGGGGAAATCTATGGAAGCAATTATTGCACGACAACCGTTCCAATTATCCGAGGGACAACAGTTTGAAAAGGTCGCACGTGATATACCTACACCAGAGGGACACGATGTTTTGGTAAAAGTCCATGTGACAGGGGTGAACCCGGTCGATACGAAAACGCGTCAAGCGCCTCTCAATGCGAAGGAACGTGTACTTGGCTATGATGCAGCAGGCGTAGTCGAAGCGGTTGGTGATGAAGTTACGGATTTCAAACCAGGTGACCGTGTGTACTATTCCGGCTCCAATCAACGTGATGGTTCCAATCAAACGTATCAGCTCGTAAATGAAAATTATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 667503-666453 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWUY01000002.1 Staphylococcus intermedius strain 14S02204-1 NODE_2_length_896212_cov_80.7018_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 667502 36 94.4 36 ...........A.....A.................. GGGACGTCCTAACAATTATTGAAAATTACCACGGCA 667430 36 97.2 36 ...........A........................ TATTTTTCTCCTTTAGCAATCATTCTGTCTAGTACC 667358 36 100.0 34 .................................... TTTTATACTGTTTTACCAGTTTTTCATTTTCAGT 667288 36 100.0 35 .................................... CCACATTTTTCAGTAACAACGATGTCACAACTTTT 667217 36 100.0 37 .................................... AATAATGTTGTGTGTAACTCTTCAATGTCTGATTGGG 667144 36 100.0 39 .................................... ATTCTATCGTCAAATTCCTTTTGAATCGTTAGTAATTCT 667069 36 100.0 36 .................................... CTTGGTATTTCACAAATTGTAACGCTTTAATACGCA 666997 36 97.2 35 ...........A........................ GTTTATCTGCATTGATCCATGTGTAAATTAATTTA 666926 36 97.2 37 ................T................... ATTCCTCCAAATTTTCACTGTGATTTTTTGATGTTGC 666853 36 94.4 37 ....T...G........................... CTGCGCAATCTCGTTAATATATTTATAGTTTTTATCT 666780 36 94.4 37 ....T...G........................... CCAAACCATTTAGCACGATATTTATTAAAACCATATA 666707 36 97.2 38 ....T............................... CGCTATATTCTTTGAAAGGCTCGAGGCTGTAAAGTGTT 666633 36 91.7 37 ............C.T....T................ TCATAAAAGTTTAATTCTGTATTCGTATTTTGTATCA 666560 36 91.7 35 ............C.T....T................ GGCAGTGTGAGATTTTATATTTGCGCAACAACTCC 666489 36 77.8 0 ..G..........................ACTTTTA | A [666457] ========== ====== ====== ====== ==================================== ======================================= ================== 15 36 95.5 36 AATCGAATAGAGACCCCGACATAAGGGGACGAGAAC # Left flank : GTGGCAGCTTCAAATCAATACAGATGTTTCACGTGAAAACTAATGGTTGATACAGTCAAATTGGGTGTTGTAGTAAGTAAAGTAAGGTAGGGGAATTTTAGTAAAATAGCTACATTCGAATCTACTAATTATTAAAATATAGAGAAAAATAGTAAGCCGAAAAAATAATTAAAGTTTGTACTGTTATAACAATTACTAAATGGATGTGATTATAAAAGCAGCGAGTTGATATACAAAGAAACATGGGAAGAATTTCATAATCGTCTTAGGGGAGTGCTGGGTTAGGATTCTTCAATAAAAAGTATGGATGGAATATGATATGAATTGTTGATTGTTTATTGTATAATATCGATGATGTAATTTGAGTTATTTATAGTTGGCTAAAATTAAAATGTCTAAAAATTGGACAATAAGGGGCGATTTAATGTTTAGTTTGTCTCAATTCAAGGCAAGGTAAAAACGCTGTTATTCCCGCTATCAAGGTGTTTTCAAAGCTGACC # Right flank : TCATTTAAAATATTAAAAAGTGCTTTTAAAGAGAAGTTATGGTGTGTAGTATATTGAAAAATAAAAAGAATATTGAAGGTGAGTTACAAGGTTTAAAAAATAACAAAAAATTCTAAATTCTATTGTTGTAAACAAAGGAATGTTGTAAAATTTAATTAACAATTTATGCGATAAAATGGGTGCGTATACATTTGTATGCATGTATTTATAAACATAATTTTTAATCATATCTATTTAAAATGTATACGTTAGCTATTAAATGAAGGTTTTGAAGAAATAGTAGACGGCATAAAAGGTATTAAAATGGAATTGAAGTAATCACTCACTGAACATTGTTCTTGTTTTTAAATAGGAGGTGTAATGGTGAAAGATATCATTTACGTTGAAAATCATCATTTTGTCAGTGTAAAAGGAGAAAGTATCAAATTTAAGAATATTATAGATAAAACAGAACGATATTTTTTATTAGATGATGTTGAAGCGCTGATATTTGATAGTCA # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCGAATAGAGACCCCGACATAAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,15] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA //