Array 1 168497-167247 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDLV01000002.1 Salmonella enterica subsp. enterica serovar Gaminara strain 230 NODE_2_length_383102_cov_23.4355, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 168496 29 100.0 32 ............................. GCGCTGATCCAGGAGTGGTGGCGGACAACCTA 168435 29 100.0 32 ............................. ACATGTTCGTAACCAGGAATCCCCGGACGGCA 168374 29 100.0 32 ............................. CTCCAGCTCAATAGTGTACTGGATGTTGATCC 168313 29 100.0 32 ............................. GTACCGGCTATGTGGCAGGGCTGCGCACAACG 168252 29 100.0 32 ............................. CCCGTCCACTGCTGGATGAAATGATGGAATGT 168191 29 100.0 32 ............................. GGTTACGCGGGCGTCTGTTAAAGAGTCCTCGT 168130 29 100.0 32 ............................. AAACAACTCTGTCTATTTTATGAATAGTTAAA 168069 29 100.0 32 ............................. ATTTAACGCGTTTTTTGGGTTTTCCCCTTATG 168008 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 167947 29 100.0 32 ............................. GTACGTTGCCAGATTGCTTTCAATGATGGCGT 167886 29 100.0 32 ............................. TACTGACACCTCAACCTTTTATTTATAAGCCA 167825 29 100.0 32 ............................. GCCGGGGTTTCCCGGAGGCATTCTGATGAAAG 167764 29 100.0 32 ............................. CGAATGCAGATGCCTCCCGTACTGCCGCCGGA 167703 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 167642 29 100.0 32 ............................. AAAACCCAGGAACGGCACCAAAATTTACACAT 167581 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 167520 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 167459 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 167398 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 167337 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 167276 29 96.6 0 ............T................ | A [167249] ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTATTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 186444-185257 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDLV01000002.1 Salmonella enterica subsp. enterica serovar Gaminara strain 230 NODE_2_length_383102_cov_23.4355, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 186443 29 100.0 32 ............................. GCTGTTTTTGCCCGCGCCAAAGCTGACCTGAT 186382 29 100.0 32 ............................. CCCGGTTTTACCGCCAACACTCACTATATTGT 186321 29 100.0 32 ............................. CGTTGCTGGCTATTCGAACTAACCTGATTGTT 186260 29 100.0 32 ............................. GCCTCAGCATTGTCATAACCCCACGCCTGGCA 186199 29 100.0 32 ............................. GCAACTTCTTATATGTAAAAAACCGTTATGAT 186138 29 100.0 32 ............................. TCCGGGGAAAGAACTCGCCTCGTCCAGCGTCA 186077 29 100.0 32 ............................. GCAATATGAATAACAACGTACCACTCATCGCA 186016 29 100.0 32 ............................. GAGCACTTTTACTGTAGGACTTGTATGAATCT 185955 29 100.0 32 ............................. CGGCCGTAGCGCCGCTCAGTCCGGGGGATGGT 185894 29 100.0 32 ............................. TATACAGGATTCTCACACTTTGGTTTGGTCGA 185833 29 93.1 32 ..G...........T.............. CGTTTTTTTTATTTGTACTATTGTCAGTACCC 185772 29 96.6 32 ..G.......................... CGGAAACAAACAAAGTTTTGCGCGATTCCACC 185711 29 96.6 32 ..G.......................... CACCAGGTAACAATATCGTCCCCGACCTTTAT 185650 29 96.6 32 ..G.......................... GCGAAATTCCCCAGATACCGCGCATCGGCACT 185589 29 93.1 32 ..G.........T................ CAAAATTAATGTCCAGGACCTTATTAAGTTAC 185528 29 93.1 32 ..G.........T................ CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 185467 29 93.1 32 ..G.........T................ TTGCCACAACCACAATGGATCAGGAGCAATTA 185406 29 93.1 32 ..G.........T................ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 185345 29 93.1 32 ..G..........T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 185284 28 86.2 0 ..G.........T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 96.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTACCTCGCCTTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATTATAGTCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAAGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //