Array 1 30116-28685 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVY010000005.1 Erwinia amylovora strain Ea160-4-51 Ea_160-4-51_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30115 29 100.0 32 ............................. CGCGATTTTGAGACAATGCAGAATTTTATTTT 30054 29 100.0 32 ............................. GTACATAGCCAGCATGCGTGTTCGTTCCTCGT 29993 29 100.0 32 ............................. GAGAAATGCAAATGAGCAATGTCACTAATCTT 29932 29 100.0 32 ............................. CCAAAAACATTGCACAAACCGAGCAGGTGGGG 29871 29 100.0 32 ............................. ACAGCTAAACAGGTAAGGGGAATGCTGGATTT 29810 29 100.0 32 ............................. GCAACGAATTAGCCCCACTCAACGTGCAATGG 29749 29 100.0 32 ............................. CGACCAGAAAACGTCCTGTGAGATCCCGAGCA 29688 29 100.0 32 ............................. AATCACAGACTGCTGTAACGGGATTTCTGTTT 29627 29 100.0 32 ............................. ATCAGGGGAATCAAATCAAAAAAACACTCTTA 29566 29 100.0 32 ............................. ACATGGTTCTCATAGCACAATCGCTTATAGCG 29505 29 100.0 32 ............................. GCGTGCTCGTACTGGCATTCTTTAGTTGTGAA 29444 29 100.0 32 ............................. TGGCGTCAAAAAGCCACTAAATGCGAGTGGAT 29383 29 100.0 32 ............................. ATTCTTGCTGCATGTAAGCCATATATTCTGCG 29322 29 100.0 32 ............................. TTTCCTGTTTCACCGTTAACTGCCTTAGCGTT 29261 29 100.0 32 ............................. ATCAGTAGCCGTGAAGGTGACTATATGGAGGG 29200 29 100.0 32 ............................. GTATCGCTGCGTAGTAACCAGTTGTGCTTTTT 29139 29 100.0 32 ............................. TACGAATTTGGAACGACAACGGGGTTACTGAT 29078 29 96.6 31 ............................A AACAGCCAGCTTAAAAACCATGTTGCTGATC 29018 29 100.0 32 ............................. CCAGAGGACAACTTTCCGCCTTTTCTCTGCGT 28957 29 93.1 32 ...........T.....A........... ATGATGGGGCTGCGCTGAACGCAACAGATCCG 28896 29 93.1 32 .................A..........C AGGTGGCGGAATACGGCAACGAGTGGATAACT 28835 29 93.1 32 ......AG..................... GAAAACCACTATGTGTATCACCGTCACCGAAA 28774 29 100.0 32 ............................. ATGATGGAACTGATAGTTTTATTAGTTGTCGA 28713 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.1 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : GTATGCGGGGATAAACCGGAAATACGATGCAACATCCAACTGTCACTAT # Right flank : ATGATATGTCTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTCTTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12850-10930 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVY010000001.1 Erwinia amylovora strain Ea160-4-51 Ea_160-4-51_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12849 29 100.0 32 ............................. GCCGTTGCGCGCGCTGCTGACGATGCCAGTCA 12788 29 100.0 32 ............................. CCCAGAAAAAACAATTGTCGTTAGCATGAAAT 12727 29 100.0 32 ............................. GTTAGTAATTTGGCCCACACAGCTATCTGCAA 12666 29 100.0 32 ............................. TCTTGACTTAGCAGCATCAATAACGGCCTTAC 12605 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 12544 29 100.0 32 ............................. ATTCGGCATTTTTATCCCTCACAACATGCGTT 12483 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 12422 29 100.0 32 ............................. GCCGCATTAAAGCCGCCGCCGCCGGAACCCCC 12361 29 100.0 32 ............................. GTGGCAGCGGCATTTGGGAAGGATCACAAAGA 12300 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 12239 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 12178 29 96.6 32 ................T............ GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 12117 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 12056 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 11995 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 11934 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 11873 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 11812 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 11751 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 11690 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 11629 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 11568 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 11507 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 11446 29 100.0 32 ............................. GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 11385 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 11324 29 96.6 32 ............................A TTGAATCAGTGTCTTTCAGGGACGATGTTTTC 11263 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 11202 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCC 11141 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 11080 29 96.6 32 .................A........... TTTCTCCACACACAACGGTGAGGGCACTGTCT 11019 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 10958 29 96.6 0 ...........A................. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.4 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGCCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAGAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTTTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGATGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //