Array 1 364174-363129 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRGA01000002.1 Meiothermus ruber strain TC-1 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 364173 37 100.0 35 ..................................... TTTTCCAGACGGCAAAGTGCGTCCCCTTGAGAACC 364101 37 100.0 32 ..................................... CCTAAGCAAGCTTGAGCAAAAGTCTGAGCACG 364032 37 100.0 36 ..................................... ACTCTGGCCCCGCTTGCGCTGGCCCCACCATGCAGC 363959 37 100.0 34 ..................................... TCTACCCTTCTAGCCTTGGATGGCGTGTTCTCCA 363888 37 100.0 38 ..................................... CCCAAGCCGGGCGACTGGCACGTCACGCGTGCCTAGCG 363813 37 100.0 37 ..................................... TTATATTGCCCGGCTTCCAAGGTACATTGGGTTGTGG 363739 37 100.0 35 ..................................... CCGGCCTGTTTTGCGTACTTTTACCGCTACAAACC 363667 37 100.0 36 ..................................... ATATTCACCGGGCGCCGCCGGCCGCCCTCGAGGGCG 363594 37 100.0 34 ..................................... GGCGATGGCGCGCTGGAGCATAGCCTCGTCTACC 363523 37 100.0 34 ..................................... GTCAATGCTATTCGCCCTTATTAACGTCCTCTTC 363452 37 100.0 34 ..................................... GTCAATGCTATTCGCCCTTATTAACGTCCTCTTC 363381 37 100.0 35 ..................................... AGCAATGTCCAAGCCGCATACAATGGTACCCGCCA 363309 37 100.0 36 ..................................... TTCACTAAAAAATTTCCGCAACATAGACCCAACAGT 363236 37 100.0 34 ..................................... CTCAAAGTTGATGTACACGCGGAAATCTCCTAGG 363165 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 15 37 100.0 35 GTTGCACTCGGGCGATAGCTCGAGTGAGGATTGAAAC # Left flank : CGGCCCTGCTCGGCCAGAGCCTCTAGATTTGCTCCCAGCAGCTCCAGATCCCTCACGCATTTTTCATCATACTAAGCCGTGGGTGGGCTGCCCAGCCCACCCTAGCCGCCAGCACAACATTTGGGAATGTCGCCAGCAGTTTGCCCCGGCACCGGAGCCGGTGCAAAGAGGGCCAACCCTCCCAACAACAGAACCAGCGCAACCAACCAGCCGATTTGCTTTTTCCCGAGAGCAGAACGTGTCTTGTTCATGCCCTCCAGCGTCGGGGCGGGGTATGCACAGTTTGTGCAGGGTGAGGTAATCTAGTGGCTAGGTAACCGCGCGAACCCCAAGCAAGTGCCAAAACCCAGGGGGGTTCGCGCAAGCCGAGAAACTGGCTAGGGGACATTGAAAACCCGCTTTCCCTCCACCTTCCCCCGCCCTGCGTCGGAAGCTTTTTTTGGGGGGTTCGCGCAAACGGCCTCTTGAACCCCGTCCTGCACGCGCGCTAGAATGAGGCT # Right flank : TACACCGCACGCGACGCTCATCGTCGCCGAGCACGATGCGATTTCTTTTGAACCTAGTGGTGGATCACTCCTGGTCGGTGGATTCCTCGAGGTCGGGTGCTTCTTTACGCGGCTTGAGCAGAGGGAAGAGGATTACGTCGCGGATGCTTTCTTGGTTGGTGAGTACCATAGCCAGCCGGTCTATGCCCAGGCCCATACCGGCGGCGGGGGGCATGCCGTACTCGAGGGCCAGCAAAAAGTCTTCGTCGATCTCCGGTTCCTCGTCGTCGCCGGCCTCGCGGCGCTTAGCCTGTTCCTGGAAGCGCGCGCGCTGATCGAGGGCATCGTTGAGCTCAGAATAAATAGGGGAGATCTCGAAGCCGGCCACAAATAGGTCGGCGCGCTCGGTGAGGTTGGTCTTGCTGGGGTCGCGGTGACGCTTGACCAGTGGGCTGATGGCCAAGGGCACATCCACCACAAACGTGGGCTGAATCAGGGTGTGCTCCACGTAGTGCCCGAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCGGGCGATAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA // Array 1 7227-7768 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRGA01000003.1 Meiothermus ruber strain TC-1 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 7227 37 100.0 37 ..................................... TGGCAAACTCGGCCTGCTTCAGGGGCATGGCCTGCAC 7301 37 100.0 35 ..................................... CTGGAATATGCCCCAGTCCAGGCCCAGGGCCTCCA 7373 37 100.0 33 ..................................... GAGGCGGTGCTCAAAAACGTAGGCCCGAGCTGG 7443 37 100.0 34 ..................................... GAGGCAGCAGTAGCTCAATATGCAGACACTCTCT 7514 37 100.0 37 ..................................... CAACGTTACCTCACGCATTACGGGAAACAACGCGCAT 7588 37 100.0 36 ..................................... GCCGGCGTTGCGGCTCCCGAGGTAGCCGAGGAATTC 7661 37 100.0 34 ..................................... CTTGGTATCATCATAAAGATGCACCTATTATAAG 7732 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 100.0 35 GTTGCACTCGGGCGATAGCTCGAGTGAGGATTGAAAC # Left flank : TGGAACGGCTAGACATTCTGGTGACCTACGACGTAAACGTGACCTCCGCAGACGGTCAGGCGCGCCTGGCCCGTGTTGCCAAGATTTGCAAAAACTTCGGTCAGCGGGTGCAGATGTCGGTCTTCGAGTGCCGCGTCTCGCGGGCCCAGCTAGAAGACATGGAGGCCAAGCTGCTCAAAGTGATCGACCCGGACAAAGACAGCCTGCGCATCTACACCCTGCCCGGTGGTCGCGAGCGTTGTTTGCGCGTGCACGGTCAGGACAGGTACACTGATTTTGACGATCCACTGGTGGTCTAAGCCACCCTGGCACTTGCTTTGCGCGAACCCCAAGCAAGTGCCAAAACCCAGGGGGGTTCGCGCAAGCCGAGAAACTGGCTAGGGGACATTGAAAACCCGCTTTCCCTCCACCTTCCCCCACCCTGCGTCGGAAGCTTTTTTGGGGGGGTTCGCGCAAACGGCCTCTTGAACCCCGTCCTGCACGCACGCTAGAATGAGGCT # Right flank : CGGGTTTCCACCAGTCTGAGTTGCCACAGCGCCGCCTCGTTGCACTCGGGCGAAGCTTAAGCCAAAAACGCTTGTGAGCTAGGGAGGGGAACTCACAAGCGTCTTTAGAAGCACCCACTATAAGTGGGATGCATTATTTATGTCTGAATTGAACGTCTTTGGGTAGGTGAAGAAAGTCCTATATAAGTGGTTCAACTATCAAAGAATAACCGCAACAACAAAGGTAATAGCCAAAGTACCCACAAAAGCTGCGGCCAGGGTAATCCAAATTTTTCCACTTTCGCGCAGGTTCATACTCGACTGCACAGCCAGGTAGGCAAAATACACGTCAACAACCAGAGATGCGATCATCAGTAAGGGAATTAATAGGATGCCGATTAGAGTGACGATTAGAACTAGGTTTAGCACCGCAGTCAAAACGCTGATGGGCACCCAAAATAGCGCAAAAGTATAGGCCACATTGTCTAGTGTTCCGGTTCCTCCCTGGGACTTACCGACAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCGGGCGATAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : NA // Array 1 1245247-1244924 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRGA01000001.1 Meiothermus ruber strain TC-1 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1245246 36 100.0 39 .................................... CATCCATCACGCCCAACTTGTTGATTTCGATTTGCACTA 1245171 36 100.0 34 .................................... TGGCGTGAACGCGTTTGCACGTGCCCTTGGTTCC 1245101 36 97.2 36 ...................................A GATAACGCAGTTTGCTCTTCATATCTCCTTCCTCCT 1245029 36 100.0 33 .................................... CCAGCCCGCCTGCTCGCCGCTTGCTGCTGCCAG 1244960 36 91.7 0 ................................GT.A | A [1244926] ========== ====== ====== ====== ==================================== ======================================= ================== 5 36 97.8 36 GTTGCAAACAAAAAGCCCCGTAAGGGGATTGAAACG # Left flank : GGGTAGCCGCCTCGGGCTTGGGCAGCGCGTCCAGCAGGTACTGCTGAATGGCCGCCCGCACCTGGGCCGGAGAAATATCGGCAACCATGCCCAAATACTACCCCCACCCGCCCCCGCCCGACACCCGTTACAAAGAGCGTAAACCCCGCCCAACCCGCCAAAAATGCCTGCGCGATCGCACCCCACCTCACACAAAACCCAACCCGAAGCCAGTCCAGCACAGCACGGAAACCCTTTCACCAAATAACCCATTATGTTTTGCGCAAAATGCTATAATACTTTCGTCGAGCAATTCGACAGCGCACTTTGAAAGCCAGGTTTTGCGATGAATAAGGCAAACCCACGCCACAAAAAATCTAAAAGTGCGGGAAAGTAAGCCCTCATCGCAAAAAACGCACTTTTTACCCCAGTTATCCACAGGGGGGCTGTGGATAACTCCAGTTTCTCATAAATACCCCCTCCAGCACCCCTGTACAGCACGGTGTTTAACGGGGTATGCT # Right flank : CTCCCAAATGGCTGCCTTGGTGAGCTCGGCTGCTGTTTGGGGATTTGGCTTTATTACCAACAAAGCTTCTAAAAATGGAGTAAGTTTTAAAAATGGCAAAATTGGTTCGGAAATACAACCCCTACACAAATAAATTCGAGATGGTTCCAGAAGACTGGGTTTTGCGGTACAACCCTTTCCAAAACCGCCACGAGTTTGCCCCAGCGGACAACAGGTTCTCGTATCTGCCAACCAACGGCAAGTTTTCGGCCATTCCTGCGCCGCCGAAATACAACCCGCACCAGGAGACCTTTTCTCCCGGCAAGCGGGACTGAGAGCCGGTGTACAACCCGCTCGAGGGCGAGTTTGAAATACGGCCAACAAAAAAGGACGACCCCGAGTGGTGAAGTGCCGTTTGGGGCGTTTGTCCGGCAAAACCCGGCTTTGTGCGCGGTGGAGGTTGTGAGGGGGGTGGGGGTGCGCTACACTGGGTTACAGGAGGAACCAACATGGGCATTCTC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACAAAAAGCCCCGTAAGGGGATTGAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 1303263-1304849 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRGA01000001.1 Meiothermus ruber strain TC-1 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1303263 37 100.0 37 ..................................... AGAAAAAATCCGGGTTGTTGACCTCGGCCCGGCGGCA 1303337 37 100.0 37 ..................................... GGCCACTTCTGGTGGAACTATGGCAAAACCTCAATCG 1303411 37 100.0 36 ..................................... AGTTGTCCCTGCACCACGAATCTGTTGGTGAAGGTG 1303484 37 100.0 37 ..................................... ATCCGAGATTTTGCTGGACTTGATCGAGAGCAGCGCC 1303558 37 100.0 39 ..................................... CTTGGCGGTGCGGGAGCGGGCCAGTCCGAGGATGTTCAG 1303634 37 100.0 37 ..................................... GCCCTGATCGAGGTAGACGCTCCGGTGGTGGCGTTGG 1303708 37 100.0 37 ..................................... GCCGGGCTCACCCTGGGCTACCGCCGCGACGCGAGCG 1303782 37 100.0 39 ..................................... AGGAGGACAACCCCGCGCAGGCCCTCGAGGCCGCCCGCA 1303858 37 100.0 37 ..................................... CACACCTGCCCCGGCGGATCCCAGGTGAGCCCCACAG 1303932 37 100.0 35 ..................................... ATCCGGCGGGCAGGGGCGCTCACGCGGTCCAGGAG 1304004 37 100.0 37 ..................................... AGGGGTGGTTCTACAAATCCCGTGAGGAATGGCACGA 1304078 37 100.0 36 ..................................... GTACCTATCGGCCAGTTGATCCCCGACCGAGTGAGC 1304151 37 97.3 37 ...C................................. GCTCCTATTATCTAGGTCGTATCCGTAACAACAACGG 1304225 37 100.0 37 ..................................... AGCGGCTCAGCGAGGCCAACGTGCCCGAGGGCGACCG 1304299 37 100.0 37 ..................................... GCTACTATTATCTAGGTCGTATCCATAACAACAACGG 1304373 37 100.0 35 ..................................... AGCACCGGCGTAGCGCGGATAAACTCGAGCGCTGC 1304445 37 100.0 37 ..................................... GGCAAATCGAGCCCCTGCTGACCACCCTGGGAGACAC 1304519 37 100.0 36 ..................................... ACCCGGGCCACAGGGGGGCCACCACCGGCCAGGGCT 1304592 37 100.0 35 ..................................... GACAACAGACAGGTTATTGGTCGCAACCACTGGCG 1304664 37 100.0 38 ..................................... AGATCTGCTAATCAATCTGCCGCGCGGCAACTACCGTC 1304739 37 100.0 37 ..................................... ATTCAGGGCCGTATACAGCGCCACACTCGGTGCAGCG 1304813 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ======================================= ================== 22 37 99.8 37 CAAGAAATGCTGTCCTCGAGCGATAGAGGACTGAAAT # Left flank : AGATCAGCCGTCCGATGACTTCCTGCTGCAACCTGAACTCGGCCAGGAACCTTTGACAGCGACGGTAGTTGGAGGCTATGTGCACCCAGGGGTTCAAGGCCAGGGCGATCTGGGCCAGGTTGACACTCCGGACTCGGATCAAAGCCAGCACAAAGGCCGACAGAAAATCCAGTCTGGCGCGATGCCACTTCAGATGGGGTCGTAGAACTTCGATGAGTTCGCTATGATGATCCATGGGACTACCTCTGGTGGGGCAGTCCCTATTCTTATCCTTTCCTACCTGCTTCTTGCAAGTTTTGTCATGTACCTAGGAGGGCTATTCTCTGGTGAAAGTGTTTGTGCCCTGCCAGGCGGCTCAACTCGCTCGCAAACCGGAATAAAATTGGCACCAATTTTGATTTGCGAGAAGCTGTTGCTTGTATACTGACTTTGCGTTCCAAACGCGCAAGAGCACATTGACAACTAGAATGCGAAGCAGAAAAACCCGCTTATTGATCGCC # Right flank : GGCGCGGTTTGCGGTATGGTAGAACCCATATGTTTCGCTCGAGCCGCACCCCCACCGGCGGAGGGGTTTTTTTGGAGATGGACAGGGCCAAGGCTGAGGCCCGCGCCCAGGGCCTCGAGGTGGTGGATCTCTCGATTGGAGCGTCCGACCTGCCCCCGCCCCCAGAGGCCCTGGAGGCTCTCAAACAGGCCATAGACAACCCCTCGAGCTACGGCTACTGCCTCAAGTCGGGCACCCTGCCTTTCCTCGAGGCCGCCACCGACTGGTACTTCCGGCGCTACGGGGTGCAGCTCGACCCCCGGCGCGAGGCCCTGAGCCTGATTGGCTCGCAGGAGGGACTGGCCCATCTGCTGATGGCCGTGGCCGACCCCGGCGAGGTTCTGCTGATGTGCGATGTGGCCTACCCCTCCTATTTTGGAGCGGCCAAGGTGGCGGGCCTCGAGGTTCACCTGATGCCGCTGGGCGAGCACCTGTTGCCCGACCTGGGGGTCGTGCCGGAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGAAATGCTGTCCTCGAGCGATAGAGGACTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 3 1554735-1554331 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRGA01000001.1 Meiothermus ruber strain TC-1 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1554734 37 100.0 35 ..................................... CTACTGGATGGCACAGGCCGCATACGCTGCCTTTT 1554662 37 100.0 40 ..................................... TTGGCTCTTGGCATCGGCCTGTCGGCTGCCTGGAAGTACG 1554585 37 100.0 36 ..................................... GCTCATGTCTATCTCCTCTCTGCGGGTCGCAGGATG 1554512 37 100.0 35 ..................................... ACAGAGGCGCTCACTACAGCAATGTCGAAAATCCC 1554440 37 97.3 37 ..............................C...... GACCTGGCTTGGTCTTAAACCAGGCCTCTCCCTGGGG 1554366 36 94.6 0 ...........-...T..................... | ========== ====== ====== ====== ===================================== ======================================== ================== 6 37 98.6 37 GTTGCACTCGGGCAAAAGCTCGAGTGAGGATTGAAAC # Left flank : CTGGCCCGGCTCAAGGTGGCTACCCAGGGACGCTTTTTAGCCCTGCGCACCATCGGGTCTACCCTGGTAGGGCAGGGCCTGGATACCGCTATTTTCCTGCTGATAGCCTTCTATGGCATCTGGGACAACAACCTGCTTTGGACAGTGTTCGTTTCGAACTACATCTTTAAAGTTGGTATAGAGGTACTGTTCACGCCCATTACCTATGCCGTGGTGGGCTTCTTGAAGCGCGCTGAAAACGAGGATTATTACGACCGCAATACCCGCTTCAATCCGTTTGCGCTGCGCTAACAAATTAGTCTCGCATATCTGGTAAAATGCGCGAACCCCAAGCAGGTGCCAAAACCCAGGGGGGTTCGCGCAAGCCGAGAAACTGGCTAGGGGACATTGAAAACCCGCTTTCCCTCCACCTTCCCCCACCCTGCGTCGGAAGCTTTTTTTGGGGGGTTCGCGCAAACGGCCTCTTGAGCCCCGTCCTGCACGCACGCTAGAATGAGGGC # Right flank : CATGATTCCTCTAGACGAGTTGGCCAGACTCTTTCCCCCTACGCGCCTGCTGCACAAACCCGGCGAGTTGGCGCCATACGAATCCGATGCGCTCACGGCCTTCCGGGCCCGACCGCTGGCGGTAGTGCTACCCGAAACCCATGAAGAGGTGGTGGCCGCGGTGCGCTGGTGTGCCAAGCATCAGGTGCCCTATGTGGCCCGCGGCTCCGGCACCAGCCTTTCGGGGGGCTCGCTGCCCATTGAGGGGGGCCTGGTCATTGGGCTCAACCGCATGAACAAACTCCTGCGGCTCGAGCCCCAGGAGCGCATTGCCGTGGTGCAGCCCGGCTTTATCAACTTACAGGTCTCGAATGCCGCCGCCCCCTATGGCCTCTACTACGCCCCTGACCCCTCTTCCCAGCCGGTCTCGACCATTGGGGGGAACCTGGCCTTTAACTCGGGCGGGGCCCACTGCCTCAAGTACGGCATGACCTCCAACCACGTGCTGGCGGCCAAGGTGG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCGGGCAAAAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : NA //