Array 1 114411-113284 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRXW01000080.1 Escherichia coli strain A337 NODE_6_length_225812_cov_57.9669, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 114410 29 100.0 32 ............................. TTACCGCTCTACGCCGCCCCGCCAGCGCTGGT 114349 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 114288 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 114227 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 114166 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 114105 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 114044 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 113983 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 113922 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 113861 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 113800 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 113739 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 113678 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 113617 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 113556 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 113495 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 113434 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 113373 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 113312 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGAGCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 141496-139960 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRXW01000080.1 Escherichia coli strain A337 NODE_6_length_225812_cov_57.9669, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 141495 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 141434 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 141373 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 141312 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 141251 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 141190 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 141129 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 141068 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 141007 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 140946 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 140885 29 86.2 12 ...............C.A.C....G.... CAAACAGAGCCG G [140859] Deletion [140845] 140843 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 140782 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 140721 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 140660 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 140599 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 140538 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 140477 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 140416 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 140355 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 140294 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 140232 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 140171 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 140110 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 140049 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 139988 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.9 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //