Array 1 255370-255061 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUZ01000013.1 Streptomyces xanthochromogenes strain JCM 4612 sequence13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ==================================== ================== 255369 24 100.0 32 ........................ CCCCCTTTCGGCCTCGCACCGTGCGTGGCTGA 255313 24 100.0 32 ........................ CCCCCTTTCGGCCTCGCACCGTGCGTGGCTGA 255257 24 100.0 31 ........................ CCCCCTTTCGGCTGCGGACCGTGGTCGCTTC 255202 24 95.8 33 .....................T.. CCCCGTTTTCGTCCGCGGGCCGTGCGTGGCTGG 255145 24 91.7 36 .T..A................... AAAAACCCGTCGCCGGCCTCGCGCCGTGGTCGCTTT 255085 24 91.7 0 ............T........T.. | G [255063] ========== ====== ====== ====== ======================== ==================================== ================== 6 24 96.5 33 TCGCGCAGTTCCCCGCGCCCCCAA # Left flank : CCGTCTGCGCCGAGCCGCCACCCGCTATCGCGCCGGTGGCGCGGACACAGCGGCTGCCCGCGTGCACGGTGACGGGGCCCGCCAACTGCGTATAGGCGCCGGAGTCACCGGCCGGGGCGCTGCCGCGGGCCTGGATCGTGACCGACATCCGGCGCCGCGTCCCCGGGTTCTTCGCGGCGGTCACCGCGCACGCGTACCCGTTGCCCTTGTAGAGGCGCAGCTCCCCCGCGCCGAACCCCACCGCCTTCACCGGCCGCCCCGCGCACGGAGCCGCCGCGTCCGCGCTGCCGCCGGCCGGCCCGAACACGACCAGGCCGCCCGCCGCCGCGAGCACGGCCAGCACGGGCCCTGTGCGCCCCTTACCGCTCACCCCACCGAACACGCTTGCACCCTTCCGTCACGTGCGCGTACGTGGGGTGGGACGCGGTAAGTCGTCCGACGGTTCTCCGGTGCGGGTGCGCGTCCGGTGCCGATCGCCGACGGCACGCCGTGGGGACCGT # Right flank : AGGCTCGGTGCTGGGGCACCTACAGCCTGTCCGGCGTTTGAGGACGAGCGCCGTTCAGGCGCGAACGGGGGTGCAGGGGGCGGAGCCCCCGCAGGGGTCTGGGGCGCAGCCCCAGGGACCGGAACCAACCAACCCCGAGTGACGGGCGGGCGGGTGGGCAAACCCCCCGGGGTCTGGGGCGGAGCCCCAGGGGGTTGGGGGTCAGCGGGCTGCGAGCGGCTCGTCCTCGGGCTCGGCTTCGCCGATGAACGTGCGCCACAGCCGCGCGTACTTGCCGTCCAGGGCGAGGAGTTCGTCGTGCGTGCCGTCCTCGGCGACGCGGCCGTGGTCCATCACGATCACCCGGTCCGCGCGGGCCGCCGTGGTGAGGCGGTGCGCGACGACCAGCGTCGTACGGCGTCCGGTGAGCCGCTCGGTGGCCTGGTTGACCTGGGCCTCGGTCGCGAGGTCGAGCGCGGCCGTCGCCTCGTCGAGCAGCAGGACGTCCGGGTCGACGAGCT # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCGCAGTTCCCCGCGCCCCCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 163309-162936 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUZ01000016.1 Streptomyces xanthochromogenes strain JCM 4612 sequence16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================================================= ================== 163308 27 85.2 73 C..A.CT.................... CGGGTTCAGGGGCTTATGGCTTCCCATGAGGCAAATGACGGCAAAGGCCCTTCAACACCGCAGGTGAAAAAGG G,A,T [163281,163284,163293] 163205 26 92.6 34 ..........-....T........... GGGCACCGGCCTGGTAGAGCAGGATCTGGACCTT 163145 27 100.0 34 ........................... GGTCTCCGGCGTGGAAGTTGCCCGTGGCGCCGCC 163084 27 100.0 34 ........................... CGCTGCTCTGAATCGCCTGGGAGAGGCCGCCGCT 163023 27 96.3 34 ...........C............... GGGAGTCGCGATGGACCGCGTCTTCAGCTTCCCC 162962 27 85.2 0 ...........CA......A......G | ========== ====== ====== ====== =========================== ========================================================================= ================== 6 27 93.2 42 GTCTCGCCCCCGCACCGCGGGATGTAC # Left flank : CGTAATGGGTGATCAGTTGCGCCAGCGGCTGTTCGCGGTGACCACCGCGCACCAGAGCGGCCAGCGCGTCCTCATCACCGCCCCAGGCTGCTTCCAGCGCAGCGACCACGCGCAGGATTTGATCTGGAGTCAGCTCCGCAGACATGGACAACACCTTAGCCACCCCAGCGACCAGGCGGGGCGGGAGATCATGGTGGAGTCCTTCCGCCGAGTCCGCTGGCTGTGTGGTGTCGCGCGTTCTGCTGATCCAAGGCCGGCGCCGCAGTTGATGTCGGTGCAGATCCGGCTACCAGCGGGAAGGCTGGCTCCGATCCGCGTGGGGCCGCCCTCGTTCCGCCCGGCGGACATACGAGCCGGGAAGACTGCTCCCCTGGTGATTCGAGAAGACTTTCAATCAGCGACGCCATGTTGCGTGGCCTGATGGGCACCCGATCGTTACTCTCGAAGCTCCCGCACAATCCTGTGCGGGATGGACCCCGATCCGACTTTTACCCGCAGGG # Right flank : GGGTAACGCCGAGGTAAGCCCAAAAGCCGCCAGTACTTGATCTTGGCGCCCTGTGCGGTAGCAGCCGTCACCCATTCGGCCCAAGGTCGTTGGTGCTGGTACTGACTGATCTCTGGGCCTGGGGCGGGACTTGTGACCTCGATCGAGCGGACCGCGTATCCGCGGTTCAAGCGGCTGATCACCGCGCATGAGCTGCATCTCTTCTTCGCGCCGACGCGGGAGGAGGCGGTGTGGGCTGCTGAGCGGATGGACTCCGACGGGCATCAGCTCGCGCTGTTGCTGGCGCTGAAGTCGTATCAGCGGATGGGCCGGTTCCCGAAGCCGGACGAGTATCCGGAGATGGTGGTCGACTTCGTCCGCCGTACGGTCGAGCTGCCGGAGGGCACGCTCCCGTTGTACGAAACGGGCCGCACCGCCGAGCGGCAGCGTGCGGAGGTGCGCCAGCGGGTGGGGACGAAGTACCAGCAGTCCCAGGCCCGGCAGATCGCTGAGGTGGCGAT # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGCCCCCGCACCGCGGGATGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.60,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 210373-210587 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUZ01000016.1 Streptomyces xanthochromogenes strain JCM 4612 sequence16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 210373 29 89.7 32 .....T.......G...........A... AGGTGGGATATCGCTCGCATCCGGATCACCGG 210434 29 100.0 32 ............................. GACCGGCACGGCGGGCCGCGAGCGTCCCGGGA 210495 29 86.2 35 .........................AGGA CGCACCGTTGGGATGTAGCCCACCCCGTGGCACGA 210559 29 75.9 0 ......TT.....GT.T......A.T... | ========== ====== ====== ====== ============================= =================================== ================== 4 29 87.9 33 CTGCTCCCCGCGCACGCGGGGATGGGCCC # Left flank : AGGCTGCCTGAACCAGTGGAGCTGTACATCGACGTGGCCTGGCTCCTTGAGCAGCAGGCCGAGTTCCTGCCCAAGGCCCTGGAGGTCAGTGACTTCTCCGGCCTCGTCGCAGCGGTCGCACGCCACAAGGTAAACACGCCCCGACTCGGCTACCTGCCGGACGCCTCCTGGCGCGCGGCCGCCCTCTTCCACGAAATCGTCAGCGTGCGCCCCCTGCCCGCACGCAACCCCACCTTCGCCGCACTCATCGCCATCTCCTACATGCAGGCCTCCGGCGAAACACTTACCGAGCCCTACGGCGGCTTCATCCAACTCGCCCACGACGTACGCGCCGGAGCTGACGTCTTCACCTGCGCCGACACCATCCGCAACTGGCGCCTCTAACCCACAACCCGGCCGGTCACCTCCCGAGACCAGACCAACTCCCCCGGACTTTGCGGCACTACACCGAACAGCACAGCGGACCGAGGGGGGGCGCGGGCGATGTCCGTGGGCCGCTT # Right flank : CGAGTGCTCGCACTCGCGGGGCCGCACCTCTTCGCACCCTCGGCGCGGGCCCGGCGCACCGCGGCGGCTCGTTTGCGACGGCTTGACGGCGCGCTATACGCGGGCCTGGCGGATCAGGTCCGGCTCATCCCTCCGGAACCGCAGGCGCGGCTCAGCTCGCGCATCGCGTTGGTTTGCCGCGCCACGGCTGCCGCGATCGTCGGGGCCAGCTGCGGGGGCTAGAATGCCTGGTGGTGCGCGTCGATTGCGCGGTGGTAGCCCGCGGGTGGTGCCCGGCGCTCCACCGTGGCAGCGGGCATCGTTGGCTGCGCGGCCGAAGTGATGAGGCTGGCCTTCACGCGCGCGGACGCCAGGACGTGAACGGTGCGGACCCTCGCACCGTTAACCCGCGAGTGGGCTGCCGCGAGCAGCTTCGGCGCGCTCCACCGCAGTTGAGTGCCGTAGGCGGGGCTGTCGCGAGCGACGTCCAGGCGTCCGGTGTCCGGGGCGAAGGCGACGGC # Questionable array : NO Score: 3.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 212886-211818 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUZ01000016.1 Streptomyces xanthochromogenes strain JCM 4612 sequence16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 212885 29 100.0 32 ............................. CTCCGCGTCCTTCGTTCGGGCGAGCAGTACCC 212824 29 100.0 32 ............................. GACGAAGACCTCGATTCGCTTGCCGCAGAGGG 212763 29 100.0 32 ............................. CCGTGGGACGGCGTGGCGGCGGGGGGTTGGGA 212702 29 100.0 32 ............................. CCGCTTCCGAACGTGCTCAAGGTGGAGCGCGA 212641 29 100.0 32 ............................. CCGCTTCCGAACGTGCTCAAGGTGGAGCGCGA 212580 29 100.0 32 ............................. GCGAATTCTGATCTTCCCCGGCCAAGCCACGA 212519 29 100.0 32 ............................. ATCCTCACCCAGCTTCGCGAGCCGTTCGACGA 212458 29 100.0 32 ............................. CCATCCAGAACCAGCGGGCCGGGGTCAGGAAC 212397 29 100.0 32 ............................. AAACCGGCGGCCGGCCCGCATAGCCGCCTAGG 212336 29 100.0 32 ............................. GCCAAGATGGGCCCCTCCGGCACGGTGCTGAT 212275 29 96.6 32 ............................T TTGGAGTGCGCGTACCGGCCGCCCACCCGGGA 212214 29 96.6 32 ............................T CGACCATGACCGGGGAGAGGTTGAACGGCCGA 212153 29 100.0 32 ............................. AACTGGCTCGACTCGCTCGCCGGCCGCCGCCC 212092 29 100.0 32 ............................. GTCGGGTACCTCGACCGCGCGGGCGAACTCGA 212031 29 100.0 32 ............................. GATGTCCTGCGTCTGCAAGCGAAGGCGCCTGG 211970 29 100.0 32 ............................. GTCCACGACATCGTGCAGAAGCCCGTCCAGTT 211909 29 96.6 32 ...........T................. CCCAGCGGGATCGCGCCGGGCATCGAGGTCGC 211848 29 89.7 0 ......................A.GC... | T,A [211820,211828] ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.9 32 GTTCTCCCCGCCGGTGCGGGGGTGTTCCG # Left flank : TGCCACGCATCATCGGTGACATCCAGCACCTCCTCACCCGGCAAACGGACGGCGCTGATCCGCCCGAGCGGCACGACGTTCCTATGGTCCACCTATGGGATCCCCGCTCCGGTGTTCTCCCCGCCGGTGTCAACTACGGCACCGGGGAAAGCTGATATGCCGTCCATGGTCGTCCTCGCCACCACAGCGGTCCCCGACCACCTCAGAGGCGCCCTCAGCCGATGGACCACCGAAGTCGTCCCTGGAATCTTCGTCGGCAGTGTCTCCGCACGCGTCCGCGACGAACTCTGGGAAGCCACCAGCGCTGTCGTCGGCAACGGCGCAGCCATCCTCATCCACCCAGCCCCCACCGAACAGGGGTACGCCATCCACACAGCAGGGGCCCGGCGACGCGTCCCAACAGACTTTGACGGCCTCACCCTGATGAAAATGACAGCACTCCCAACCCGACACCTAGCAAAGGAATAGCAAAGGCTCCCTAACTGTGCAGGTCAGAAAGA # Right flank : TTGGCGGGCGACATCGAGCGCGCCCTGCGGGTGTTCCTGGACTCGGCTCTGTTCGGCGAGCTGGACGCCGATCCGATCGGCGCGGCGTCCGTGCTCGCCTTCGGCCCGCTGCGGGCGGTGGAGGAGGCGCTGGTGGAGTTCCGCCGCAGTGCGCTGGGGCGGCTGGCCCGGACGGAGGAAGCCGGCGTTGAGGTCCGGCGGGCCTACAGGACCGAGCAGGGGCGGCGCTGGTTGAGGCATAACCCGACCGGTGCGGACGCCGTCGCCGCGGCGACGAAGGCCGCCGACACCGCCCGCGAGCGCGCTGCCGAGTGCCTGCTCGCGACGCGCCTGCGCCAGCTGCGCGAGCAGGCTGCCGCCCGGACCAGACAGGCCGCCTCCGCGCCGCGGACGGACCGGCTGCCCGAGCTCGCCGCCCGCCCGCTGACCGACGACACTGCGGAAGAAGTGATCGTGTGAGCACCGAGATGAGCGGTGTCGACCTCGCCCGCCAGGCCCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCCGGTGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGATGCGGGGGTGTTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.20,-12.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 222630-223999 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUZ01000016.1 Streptomyces xanthochromogenes strain JCM 4612 sequence16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 222630 29 100.0 32 ............................. TCACTGGAGAGCAATGTCTCAACCATCATGAT 222691 29 100.0 32 ............................. TTGTGGGCCTCGGCGATGTCGAGACTGTTCGG 222752 29 100.0 32 ............................. ATCGGTCTTGGTGATGCCGGAACAGTCCAAGG 222813 29 100.0 32 ............................. CGGTCCGGACCCGCCTCAGCGATCCGGCGCAG 222874 29 100.0 32 ............................. TCGAAAGGTGGAGCCTGCCGATCCTGCGGCCA 222935 29 100.0 32 ............................. ATGGCTCAGGAAACAAAGGATGTGCCCGGTGA 222996 29 100.0 32 ............................. CCTGGGCCCGCCTCGCCCTCGACTGCTACGGG 223057 29 100.0 32 ............................. GTCGCTCCGAGCGCGCCGTAGAAGCTGCCGGT 223118 29 100.0 32 ............................. CCGCCGCGGCGCGGCTACCCGAGCCCGTACGG 223179 29 100.0 32 ............................. ATCTGGGCGGCCGCCAACCCGGCCATGGGCGA 223240 29 100.0 32 ............................. CCGTTGGCGCTCATCGGGCGGCTCCCGCGGGT 223301 29 100.0 32 ............................. GCAGCTGCATGGACAACGTTGGCGCTTCCCCA 223362 29 100.0 32 ............................. CTTGCTATGCCGCTCTGTTCCCAGAGGCGCAC 223423 29 100.0 32 ............................. ACCGGCGAGAGGTGGAACGGCCTGCCGTCTAG 223484 29 100.0 32 ............................. CTCACGCCGTTGGACGACCGTCTTAACGGGTC 223545 29 100.0 32 ............................. CAGATCTGGGCACAGGCGCTCGCCGGAGACCG 223606 29 100.0 32 ............................. TCAGCGACGGCACCGAGCACCTGGTCCGCTTC 223667 29 96.6 32 ............................T CCATTTCGTCACGTGGAGAAACCGAGGGACCC 223728 29 100.0 32 ............................. CCCACACCGAAGCCCACGCCGAAACCGTCCGG 223789 29 100.0 32 ............................. GCCGTCAGGGCCGCACACAGGCGCCTATGGTC 223850 29 100.0 32 ............................. CCACCCGAGGAGCAGGCCGCCGCCCTGGCCCG 223911 29 96.6 32 ...................A......... TTCCAGCTTCAGCTCACACAGCGCCGGACCGT 223972 28 93.1 0 ..........-.............C.... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.4 32 GTCCGTCCCGCCGACGCGGGGGTGATCCG # Left flank : GATCTTCCCCACATCACCGGTCAACCGACCACTGAGCCCATCCCTGCCACGCGCGTCGCAGAACTGAAAGCCCGACAGCTTCCCCAGATCATGCAACCCACCACACAACCCCACCAGCGCACGCGCCCGTTCCTCTTCACCCTCCAACCCCATACCCGCAGCGATCACCCGCCGCTGACTCTCCGACAGGTAGCGGTCCCACAGGCACAACGCCATCGCCGCGGTATCCAGCAAATGACGCACCAGCGGATACAACGGCAACGCCTGATCCAGCCCCCGCGACTTCGCCCACACCGACTCATCCGGCTCCTCGCCCAACCACCGCATCATCAGCACCCTCCCCGTGCAGCCGGCCCAACAACCCGGACCCCCAGCCAAGCACCCAGCACCGACAACACGCCCAGCACAGCGCTGTACCGTGCATCCATGAACCCAGCAGACGCCCCATCCCTTCATCTAAAGCAACGGCAAAGCCCCCGCTAGAGTGCAGGTCACGAAGA # Right flank : GGTAGTTGATCGGGGAGTGAGCACCGGACCAGTTTGGTGTTCGTGGTGGTCGGCTCGGTCCGGCAGGCGATAATCGAAGTATGGCTGTTACGTCCTCCCGTTTGCAGGTGCCCAACGCCGGCGAGGTCCTGCGCGCCCGGTACACCCGGCGGCTGCCTGCCCGGCTGGAGGACCTGCGTGGTCCTGCACATGGCACGGTCGACCTGCCGCTGCATGTGGTTTGGTCGGGCAGGCGCTCCTTCGACGTGAGCGCCTTGCGTCCGCGGATGGGTCTGTACCGGACCGTCCTCGCCGAGGGGCAGCGGCAGGACGTGGTGGACTTCCTCAACCGGGACCTGCTCGTCGCCCAGTGGCCGGTGCTGCGGACCTTGATCAGCCGCCTGGTGCGTGACGTGTGGGAGGACGCCTTCCCCGAGCTGAGGTCTGTCCGGATCGCGACCGCCGTATGAACCTGACTGCTCTGCACCGTCGCCTGCTGGCCGACGTGCTCACCATCGGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTCCCGCCGACGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCCGACGCGGGGGTGCTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.50,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 225866-226321 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUZ01000016.1 Streptomyces xanthochromogenes strain JCM 4612 sequence16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 225866 29 100.0 32 ............................. GCCGACCACGAGCGGATTGTCTCGCTGAAACG 225927 29 100.0 32 ............................. CGCCACGGCCAGGCCATGAGCGGGATCAGGCG 225988 29 100.0 32 ............................. GCCTGCTCGTCGGGGTCGAGGGCGGTCACGGC 226049 29 100.0 32 ............................. CCTCGTCGAACCCGTAGACGAGGCCATCGTCC 226110 29 100.0 32 ............................. GTCATCACGGGCGCGGCGAACCAGGAACGCCT 226171 29 100.0 32 ............................. TTCCTGCATGTGCGTACGCGAGCGAGCCAGGA 226232 29 100.0 32 ............................. TCGAAGAGCAGCGAGAGAAACACATCGAGGCC 226293 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTCCGTCCCGCCGACGCGGGGGTGATCCG # Left flank : CGTGGAAGGTGTTCGCCGTCACGTGCGCGGCCAGCTTCGGGGTCCTCCCCGCCGATGCGGGGGCGGGCTCGGCCCAGCAGTGCGGCCGGCCTGGTGGCCCGCGTCTGCCCCGCTGACGCGGGGGTGCTCCGCCGCCAGGTGGTTGGTGCGGGCGGAGTCGATGTCCTCCGCCGCTGACTTTCCGACAGGTAGCGGTCCCACAGGCACAACGCCATCGCCGCGGTATCCAGCAAATGACGCACCAGCGGATACAACGGCAACGCCTGATCCAGCCCCCGCGACTTCGCCCACACCGACTCATCTGGCTCTTCGCCCAACCACCGCATCATCAGCACCCTCCCCGTGCAGCCGGCCCAACAGCCCGGCCCCCCAGCCAAGCATCCAGCACCGACAAACACGCCCGGCCCAGCGCTGTACCGTGCATCCATGAACCCAGCAGCCGCCCCATCCCTTCATCTAAAGCAACGGCAAAGCCCCCGCTAGAGTGCAGGTCACGAAGA # Right flank : CCCCTCCCGAATAAGGGAGGGGCCAGCATTCCGTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTCCCGCCGACGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCCGACGCGGGGGTGCTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.50,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 54453-54723 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUZ01000020.1 Streptomyces xanthochromogenes strain JCM 4612 sequence20, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 54453 29 100.0 32 ............................. TCGTGGTTGCGTCGGACCATCAGGTACACGTC 54514 29 100.0 32 ............................. GATCTGCTCCCCCACCGGCTCGGGTCCACCTT 54575 29 100.0 32 ............................. ACCGCCGAGGTCACGAACACCACGATCACGGT 54636 29 100.0 30 ............................. AGATCGCGGCCCCCCCATGGCAGCAGACCG 54695 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GGGACCGTCCCCGCGCGTACGGGAAGCAC # Left flank : CGGCCCACCGTGGCCAGGGCCCCCGGCCCCCACGGGGGCCTCCGCACCGGCCACCGAACAGGTAACTTCATCCGTGCCCTGGGCGTTGGGCCCGGCATGAGACGGAACCTGTGTGTAAGCGCGGCCGTGGCCTTGGCGTGCGTCATCCCGCTCGCGACGCCGGCCGCAGCGGACTCCAGCGCCTGCACCCACCATTGGTCGGGCCCCCAGGTGTGCATCCGTCTGGAGGGTCGCAACCACTGGAACAGCGTCACCGGGATCTGGACCAATCCACCAAAGACCGCAAGGCAGCGAGACGTCATGCTCACCCTCAACGGATGGCAGCTCGGATCGGCACAGACGGCCCGACGGGTTGGTGGAACCCTGAGCTACCACTGGTCCGGCTTCGACACCGGCACCGACACCAAGATCTGTGTCCACTTCACCGGAATCAGCAGGGTGGCCTGCGACACCACCAAATACGTCGGAGACCGTGCTTGACCACCTCCCTGGTGTTGAAG # Right flank : CACTTCGCGACCTGCGGGTTTGTCGAGGGAGATGCCCGTTTTCGATGACTTTCGAGAAGTCCGGCATTCACCGCGTTCGTACGCACTATGCACATATGGGGACGGCTGGGGAGTTGCCTCCCCAGGGTGACCCGCAAGGGGTCTTCCCGCTTCACCCTGCCTGCCCCAACGCCCTTGCAGGGTTGGGGTCTTACATGCAGTCCACGGGCGTTACAGCCCCTGCTCCAGGGGTCTGGACCGGCCTATGGCCGGTCGGGTGTTGCGTGGTTCTTGATGTTCTGGGCCGCGTTGACGTCCCGGTCGATGATCATACCGCAGGCGTCGCAGCGGAATTCCCAGTCTGCGAAGGGCTCCTGACCAGGGGGACCGTCCCCGCGCGTACGGGAAGCACACCCAGCATGCGCGATGCGGACGCAGAAAGGCGGGACCGTCCCCGCGCGTACGCGAAGCACTTGATGCCGCGAAGCCGGGATGGGTGACCGCGGGGACCGTCCCCGCGC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGACCGTCCCCGCGCGTACGGGAAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 55085-55417 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUZ01000020.1 Streptomyces xanthochromogenes strain JCM 4612 sequence20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55085 29 100.0 32 ............................. ACCCAGCATGCGCGATGCGGACGCAGAAAGGC 55146 29 96.6 32 .....................C....... TTGATGCCGCGAAGCCGGGATGGGTGACCGCG 55207 29 100.0 32 ............................. GCCGGCGGGCGGAAGGTCACCCGGGCTCGACC 55268 29 100.0 32 ............................. GACACCAACACCATCACCCTGGACCTGACCAA 55329 29 93.1 32 .......................CC.... CCGACGACGTGGGCGAGCAGCGCGGTCGGCTC 55390 28 93.1 0 ...................-A........ | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 GGGACCGTCCCCGCGCGTACGGGAAGCAC # Left flank : CCGCGCGTACGGGAAGCACACCGCCGAGGTCACGAACACCACGATCACGGTGGGACCGTCCCCGCGCGTACGGGAAGCACAGATCGCGGCCCCCCCATGGCAGCAGACCGGGGACCGTCCCCGCGCGTACGGGAAGCACACTTCGCGACCTGCGGGTTTGTCGAGGGAGATGCCCGTTTTCGATGACTTTCGAGAAGTCCGGCATTCACCGCGTTCGTACGCACTATGCACATATGGGGACGGCTGGGGAGTTGCCTCCCCAGGGTGACCCGCAAGGGGTCTTCCCGCTTCACCCTGCCTGCCCCAACGCCCTTGCAGGGTTGGGGTCTTACATGCAGTCCACGGGCGTTACAGCCCCTGCTCCAGGGGTCTGGACCGGCCTATGGCCGGTCGGGTGTTGCGTGGTTCTTGATGTTCTGGGCCGCGTTGACGTCCCGGTCGATGATCATACCGCAGGCGTCGCAGCGGAATTCCCAGTCTGCGAAGGGCTCCTGACCAGG # Right flank : CCCTCCGCGACCTGCGTGTCTACCCGACTACACAGTTGTTTCCAACGACTTTCGAGAAGTCCGGCAATCACCGTGTTCGCGCGCACTATGCACATATAGGGACGACTGGGAAGTTGCCTTCCCAGGGTGGCCCAGAGGGCCTTCCCGCTTCACCCTGCCTGCCCCAACGCCCTTGCGGGGGTGGGGTCTTACGTGCAGTCCACGGGCGTTACAGCCCCTGCTCCAGGGGTCTGGACCGGCCTATGGCCGGTCGGGTGTTGCGTGGTTCTTGATGTTCTGGGCCGCGTTGACGTCCCGGTCGATGATCATACCGCAGGCGTCGCAGCGGAATTCCCGGTCGGCCAGGGTCAGGTTGGTGTGGATCCATCCGCACCGGTGGCACGACTTCGACGACGGGAAGAGGCCGGGGACTCTGGCGATGGTGACGGCGCGCCAGCCCGCCTTGTACTCGATCTGGCGGTTGATCTCGGCGAATCCGACGTCCAAGAGCGCCCGGTTGA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGACCGTCCCCGCGCGTACGGGAAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 36-1040 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUZ01000030.1 Streptomyces xanthochromogenes strain JCM 4612 sequence30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 36 29 100.0 32 ............................. CTGTGGTGGGAGACCGTCGCGCCGGCGTTGGT 97 29 100.0 32 ............................. TTCGACGGTTCCGCCGGGACCGACCAGGCACT 158 29 100.0 32 ............................. GTCCGTCAGGGCCGCCGCCGCCCCACGCGTAG 219 29 100.0 32 ............................. TCGATCGAGGGCGCCGCCGACCTGAAGGTCGA 280 29 100.0 32 ............................. GCGCAGATCGGTGCGGACGTTGCGGGGGTGGG 341 29 100.0 32 ............................. ACGTTCTGAAACGCGGCGGGGACTGCACCGAG 402 29 100.0 32 ............................. GTTTCATGGACGCTCTCGACCAGGGCGCCGTT 463 29 100.0 32 ............................. GAACTCCTGAGTCTCGCGGGCCGGTTCATCAC 524 29 100.0 32 ............................. GCGAGCGGATCACCGGAGCCTCCGAGGAGGGA 585 29 100.0 32 ............................. CCCTGGCTCCAGGTGAGGCACTGCACTCCCCG 646 29 96.6 32 ..................C.......... GCCCAGATCTGCGCCATGGCCAAGCTCGAGCC 707 29 100.0 32 ............................. CGGGTGAGGGCTGCGCGCGGAACCCAGCTGAC 768 29 100.0 32 ............................. CTAGCTAAGGCGAGGGGGTCGACCTACGATGT 829 29 93.1 32 ...........T.G............... CTCGTGCTGCCGATGGACGAGATGTGGCGAGC 890 29 96.6 32 ...........T................. GGGGCGGGAACCCCCTCTCGGCACCGGCCCCC 951 29 96.6 32 ...........T................. GCCACCCGTAAGAAGAACCGGGAGACTGAATC 1012 29 89.7 0 .............G.......A..T.... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.4 32 GTCCGTCCCGCCGACGCGGGGGTGATCCG # Left flank : CCGGTCACCAACTCAGGGAATCCTCCTCCTCTCTTG # Right flank : GCATCATGGCCGGGGCCACTCTCGACGTGCAACGTGCCGAGCGCCTCGGCCTTCCAGTCCGCCCTGTAAAGGCCCCACGCGCGAGTGTGCTTCCTGTCTGGCTTTCGGGCCGGGCAGGAGGCGCATTTGTCATATCGTGTTGCCAGCAACCCGGCATGTTGACACCGCGATTCGCAATCTGCCGCAATCACCGGGTTCCCCCGCTCCGTTCATCGCATCCTGGTTCCCCAACCAGCGCGGACGGAGGGCGACATGACGCTCAGGTTCATCGGCACCACCAGCGAGCACGGCAACTGTCCCACCCTGTACGAGGTCGTCGAGACCGGCGACATCGTCGTCCAGGGCGACCAGCTGACAGACCCCGAGCACCTCGGTCAGCTGCGCGACGTCGGGGAGCACGAGACCTCTGTCGTCATCCCCCGGGACCTGCTCACGCGTTTCGCGCCGAAGGAGTGACCTTGCCTCCCCTGATCCCGTTCGACGAGATCGTCCACCTGTTC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTCCCGCCGACGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCCGACGCGGGGGTGCTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.50,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3967-4770 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUZ01000030.1 Streptomyces xanthochromogenes strain JCM 4612 sequence30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3967 29 100.0 32 ............................. GTCACGAAGATGACCATCCCGCCGTTGCGGAC 4028 29 100.0 32 ............................. TCGTGGATGTAGTCCTCCACGAACACGCCGTT 4089 29 100.0 32 ............................. GCGTTCTACCGCTTCCCCCGGGCCGGCGGCGC 4150 29 100.0 32 ............................. AACGTCGAAATGCTGCGCCCGGCCGGGATGCG 4211 29 100.0 32 ............................. CGATCCGGTCATCGCCGACGTGGTCCGGGTCC 4272 29 100.0 32 ............................. CCCCGCCCGCTCGAGGGCGGCGTGTGGAAGTG 4333 29 96.6 32 ............................T TTCAGGCACGGATTAGGTCAATTCACATAATC 4394 29 100.0 32 ............................. ATTGAGGACCAGGGCCTGATAGTCAGCGGGTC 4455 29 96.6 32 ........................A.... CCGGGTGTTCGCCGACCATGTCGGCGCGGCGA 4516 29 96.6 32 ........................A.... ACCCTCACGCGGATGCAGCGGTTCGTCCTCTG 4577 29 93.1 32 .................A......A.... ACGCGTGGGCGCCGCACAAAGCGGATTCCGCG 4638 29 96.6 32 ........................A.... GCAAGCGAGACGCGGACCCAACCACCCTCCAC 4699 29 96.6 14 ........................A.... TTCAGTGGGTAGGT Deletion [4742] 4742 29 89.7 0 .....................TG.G.... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.6 31 GTCCGTCCCGCCGACGCGGGGGTGTTCCG # Left flank : GGCTCCCTCGAATTGAAGGGGGCCGCGTCGTGAGGCAGTGGGACTACGTCGTGTACGAGCGGGAGGGTCGCACCGGGCTCATCACCCTCGACCTCGGCGACGACCTGATGCGAGTGGCGTTCCTCCGTCCGGTCCCGCCGGGGCAGCTGGCCGAGGCCACGATCCGCACCGGCGACCTGAAGCCGGCCACGGCGAAGGAGACAGAGTACGTCCGGGCCGGGGGCTGACGCCTGAGTCCCAGCGAACGTTCCTTCCGCCGCGGATCGGTCGTGTTCCTCGCGACTTCGCCCAGACCGACGCATCCGGCTCTTCGCCCAACCACCGCATCATCAGCACCCTCCCCGTGCAGTCGGCCCAACAACCCGGACCCCCAGCCAAGCATCCAGCACCGACAACACGCCCAGCCCAGCGCTGTACCGTGCATCCATGCGCCCAGCAGACGCCCCATCCCTTCATCTAAAGCGACGGCAAAGCCCCCGCTAGAGTGCAGGTCACGAAGA # Right flank : GATTGCGCCCTGTGGATTCGGCCGGCGCCGTGGGGGGCGCCCCTCCACCAGGGCAAGCCTTCCATTATCAGCAGCCGTCCCAACAGCCCGGACCGCCAGCCAAGCACCCAGCACCGCCAAGACACCCAGCGCAGCGCTGTACGGTGCATCCATGGACCCAGCAGCCGCGCCAACCCTTCATCTAAAGAAATTGTAAAGCCCTCGCTAGGGTGCAGGTCACGAAGGGTCCGTCCCGCTGACGCGGGGGTGTTCCGGCCGAGGACGCCGAGCACATCGCCCGCGTCCGGTCCGTCCCGCTGACGCGGGGGTGTTCCGATGCTGGCGCCGGCGCTGGTGTTCATCGCGCCGTCCGTCCCGCTGACGCGGGGGTGTTCCAGGGCCTGCGTGACATCCTGCATCGGCTCGATGGTCCGTCCCGCTGACGCGGGGGTGTTCCGCTGCTCGGCACGCCGACGCAGCTTGGCCAGGAGTCCGTCCCGCTGACGCGGGGGTGTTCCGAA # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.11, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTCCCGCCGACGCGGGGGTGTTCCG # Alternate repeat : GTCCGTCCCGCCGACGCGGGGGTGATCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCCGACGCGGGGGTGCTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.50,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4995-5328 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUZ01000030.1 Streptomyces xanthochromogenes strain JCM 4612 sequence30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4995 29 100.0 32 ............................. GCCGAGGACGCCGAGCACATCGCCCGCGTCCG 5056 29 100.0 32 ............................. ATGCTGGCGCCGGCGCTGGTGTTCATCGCGCC 5117 29 96.6 32 ............................A GGGCCTGCGTGACATCCTGCATCGGCTCGATG 5178 29 100.0 32 ............................. CTGCTCGGCACGCCGACGCAGCTTGGCCAGGA 5239 29 100.0 32 ............................. AAAAAGCGCTCACCCTCGCGCAAGCGGGGCTC 5300 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTCCGTCCCGCTGACGCGGGGGTGTTCCG # Left flank : CCGACCATGTCGGCGCGGCGAGTCCGTCCCGCCGACGCGGGGGTGATCCGACCCTCACGCGGATGCAGCGGTTCGTCCTCTGGTCCGTCCCGCCGACGCAGGGGTGATCCGACGCGTGGGCGCCGCACAAAGCGGATTCCGCGGTCCGTCCCGCCGACGCGGGGGTGATCCGGCAAGCGAGACGCGGACCCAACCACCCTCCACGTCCGTCCCGCCGACGCGGGGGTGATCCGTTCAGTGGGTAGGTGTCCGTCCCGCCGACGCGGGGTGGGTCCGATTGCGCCCTGTGGATTCGGCCGGCGCCGTGGGGGGCGCCCCTCCACCAGGGCAAGCCTTCCATTATCAGCAGCCGTCCCAACAGCCCGGACCGCCAGCCAAGCACCCAGCACCGCCAAGACACCCAGCGCAGCGCTGTACGGTGCATCCATGGACCCAGCAGCCGCGCCAACCCTTCATCTAAAGAAATTGTAAAGCCCTCGCTAGGGTGCAGGTCACGAAGG # Right flank : GGCGGCTGCGCTAAGACGACGTTTCCTTTGGTGGAGATGGTCGTTGTGTTGGTATGACGAGTCTTGCTGAGCATCTGGTCTCGGATGAGTTGTGGGAGTTGTTTCGGCGGGTGGTGCCGGAGACGGTGGTGGTGCGTCCGCAGGGCGGAGGCCGTCGGCGGGCCGGGGACCGTGAGTGCCTGACGGCGATCGTGTTCGTGGCGACGTCGGGCTGTTCCTGGCGGCAGTTGCCGCCGGTGTTCGGACCGGCCTGGCCCACCGTCTACAGGCGTTTCGCGCGCTGGAGTCAACAGCGTGTCTGGGCCCGCCTGCACCGCGTCATCCTCGACGAACTCGGGGCCCGGGGCGCTCTGGACTGGTCGCGGTTCGCCGTTGACTCCGTCAGTGTCCGTGCCCTCAAAGGGGGCAGCTGACCGGACCGAATCCGACCGACCGCGGCAAACTGGGATCGAAAATCCACCTCGTCGTCGACCGGGCCGGCCTCCCCGTCTCTGTCGCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTCCCGCTGACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCCGACGCGGGGGTGCTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 6221-7232 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUZ01000030.1 Streptomyces xanthochromogenes strain JCM 4612 sequence30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 6221 29 96.6 37 ............................C GTCGCTCGGAGATCGCGGCCGCCCGGCAGATGATCGC 6287 29 100.0 32 ............................. TCCAGGAAGGGCTTCGTCTCCATCAGGTCCGC 6348 29 100.0 32 ............................. AACGGGCACACGAGATCGGCAGGGACGGCCAC 6409 29 100.0 32 ............................. CCTCCGTGACCGCCTCCTGGACGTGCCCCACC 6470 29 96.6 32 ....................A........ ACCGCGCTCACCCTCTCCGACCCGCTCACCCT 6531 29 100.0 32 ............................. CGGCCGCCAAGGCCGCCGCGCACACCGCCGCC 6592 29 100.0 32 ............................. AATTTTGGTGATGCGATCCGGCACGTCGGTGC 6653 29 100.0 32 ............................. TACGCGCCTGTACTGCTCCAGTCGATGGCCAG 6714 29 100.0 32 ............................. CACCGGGGTGACGCGCCGCAAGGCGTCCACCA 6775 29 100.0 32 ............................. CCATCTCTCAATAGGGTGTTGACAGACCGTCG 6836 29 100.0 32 ............................. GACTGGGACACCGCGACCGCCCTGCGCCACCA 6897 29 100.0 32 ............................. GGTCGCTGCCCCGACCATCACAAGGCGTACGA 6958 29 93.1 32 ..................CC......... CCACCGAAACCCACCTGTACGCCTACTACGGC 7019 29 96.6 32 ......G...................... GCGGCCCTCGCGCAGGCCGCCGTCGCCGAGGC 7080 29 96.6 32 ...............A............. ATGACCAGGTCCGGGCTGTTGGCGCGCAGCCA 7141 29 93.1 33 ...........C............A.... GACCTCAGGGCCCATCTTCATCACCCGCACGGG 7203 29 82.8 0 ...T.......C.........A..AA... | G [7226] ========== ====== ====== ====== ============================= ===================================== ================== 17 29 97.4 32 GTCCGTCCCGCTGACGCGGGGGTGTTCCG # Left flank : CCCTCAAAGGGGGCAGCTGACCGGACCGAATCCGACCGACCGCGGCAAACTGGGATCGAAAATCCACCTCGTCGTCGACCGGGCCGGCCTCCCCGTCTCTGTCGCCGTCTCTGCGGCCAACACCCATGACAGCGTCGCCCTGCAACCGCTGATCATGGGGATCCCGCCGGTCCGCAGCCCGCGCGGACCACGGCGCCGCCGACCGGCAAAGCTTCACGGCGACAAGGGCTACGACTACCCCCACCTGCGTCGATGGCTCCGCGAGCGGAACATCATCCCTCGTATCGCGCGCCGCGGCGTCGAGAACTCACAACGCCTGGGCCAACACCGCTGGGTGGTCGAGCGCACCATGTCCTGGCTCGGCGGATGCCGACGCCTGCACCGACGCTACGAACGCAAACCCGAACACTTCCTCGCCTTCACCGCCATCGCCACCAGCCTCATCAACCACCGCCGACTCACCAACTGAAACGACGTCTAAGGCAGCACCGTGCGTAGAC # Right flank : GACGTCTCTTCGCCGGGTAGAGCAGTTTAGAACTGCTCGGGCGCGTATGCGGGGATAGACCCCCGGTGCCGTAGCTCGGGTTGCCTTCAGACCGCTGTTCGCTGCCGGGGAGGCTCTGCTTCCCGTGTACGTGGGGGGCGGCATCTGGTGCAGAGCCTTATCATCTTCGGCTTCCGCTACCTACTCGCGGGAGGACACGGTCTGCAGATCCCGCTCAAGAAGTCTTCCCAGGAGGCGAGTTCAGCAAGCCGCCCTGAGAGGCGCATAGGGCGTGGTGCGCTAGGGCGTGTCTCTCCGATCACCCTGATTGTCTCGCGGCTCCGCCACCACGATGGGGCCCTGGAGGCATCGCCTCCAGGGCCCCGGGGATCATCGCCGCGAGCGGTCCGGATTCGTGATCCTGAACCGGGCCATGTTCTCCGTGTTGTCTTCGGTGGCCCACCGGCGGAAGCCGGCCTTCTCCAGCACACGGACTGAGGACGGGTTGGAGAGCTCCACAT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTCCCGCTGACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCCGACGCGGGGGTGCTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 428213-428018 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUZ01000005.1 Streptomyces xanthochromogenes strain JCM 4612 sequence05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================== ================== 428212 24 91.7 34 .A.....................C CGGCCACCCACGGTGCGAGGCCGACAGGGGGTTT 428154 24 100.0 33 ........................ AAGCGGGCACGGTGCAAGGCCGACGACGGGTTT 428097 24 100.0 32 ........................ AAGCGACCGTGGTCCGCAGCCATGAACGGGGT 428041 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================== ================== 4 24 97.9 33 TGGGGGCGCGGGGAACTGCGCGAG # Left flank : GATCACCTCGTACCCCTCGGGGAGGGAGAAGAGGTCGGCGATGCCCTGGCGCACCTCGCCGACCAGGTTCTTGACCGGGGCCTGGCGGTGGGAGGTGCCGAGGAGGGAGGTGCCGGTGGCGGCCAGGGCGTTCAGCGCCTCCGTACGCACCTTGGAGGGGCCCGCGCCGAAACGGCCGTCGGCGGGCTTCATGTCAGCGGGAATCTGGATCTCAGCCACGTGCCGGAGCGTATCCGGTTCCGGCCCGGCCGGTCCCCCGGGTCCGCCCGATGAGACGCCCCCCACACGGACGCCCCTCCCCCCGGGGGGTTTGCCCGCCCGCCCACCCGTGGCTCGGGGTTGGTTGGTTCCGGCTCCCTGGGGCTGCGCCCCAGACCCCCTGAGGGGCTGCGCCCCTCGGACCCCCGCAGTGGGCTCCGCCCCCTGCACCCCCGTCGCGCCTGAACGGCGCTCGTCCTCAAACGCCGGACGGGCTGTAGGTGCCCCCGCACCGGTATTGA # Right flank : CGGTTCCCCGCGGGCCGGGGCCGAGCAGAGGGGGCTGGGGGCGGAGCCCCCGGGGCATCCCGTGTGGGCCGGGGCATCCCGTGTGGGCCGGGGCACCCCGTGTAGGCCGGGGCGCCCCGTGTCGGCCGGGCCGGGGGCGGGGCCCCGGGAGTTCAGGTGAGACGGACCGGGAGGTCGAAGAGGTCGTTCTGGGTCACGATCGGCTTGTTGCGGAGGGCGGCCGCCGGGACCCCCAGCGTCAGGGAGGGGAAGCGGGCGTACAGGGCCGGCAGCGCCACCCCCGCCTCCAGGCGGGACAGCGCCGCCCCGGGGCAGACGTGCGGCCCGTGCCCGAAGGAGATGTGCCGGTTCGGCGCCCGGGTCACGTCGAAGTCCCCCGCAGTGGGCCCGTGCTGCGCCTCGTCCCGCCCGATCGCCCCGAAGGAGACGATCAGGGCCTCCCCCGCAGGAAGCACCCGGTCCCCGACCACGACGTCCTCCGTCGCGAACCGGAACAGCAC # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGGGGCGCGGGGAACTGCGCGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA //