Array 1 6869-5380 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHV010000003.1 Listeria marthii strain FSL W9-1217 NODE_3_length_494570_cov_63.739335, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 6868 36 100.0 30 .................................... AGTACATTTTTATTCATTTGCTTCCAGTTA 6802 36 100.0 30 .................................... CCATATCCAGTGCGTTACCATACTTTTCTA 6736 36 100.0 31 .................................... TAAGTCGGGAGATTTCTCGACGGTTGCAGCA 6669 36 100.0 30 .................................... TAAGCATCAAATTTTTGTTTATTGATTTAT 6603 36 100.0 30 .................................... AAAAATAAATCATTCTATAACACCGATGCG 6537 36 100.0 30 .................................... TAAAAGCTTAAAACAGCTTGAAGCGTTTAT 6471 36 100.0 30 .................................... AAACATCCATTAGCGCAACAAGTCGAAACG 6405 36 100.0 30 .................................... GAGTAATAAAAAATGTGTCTTGTTTTACTA 6339 36 100.0 30 .................................... GAAGTTGCCGAAGCTGTTCGCAAATGGACC 6273 36 100.0 29 .................................... TTACTGGAATCAACACAGCTCGTACTTTC 6208 36 100.0 30 .................................... TAATTCGCTAGGGTTTGCAACCCAAGGCGC 6142 36 100.0 30 .................................... CGCATTTCTAGTGGGGGACGTGCGAAAGAA 6076 36 100.0 30 .................................... AAACAGCATTGAGTTTTTATACAAGTGGTT 6010 36 100.0 30 .................................... TCCAGAAAGGTGTAATAATTATCACGATTC 5944 36 100.0 30 .................................... TGAGGCGAAGGCATGAAAACAATCGCAAAT 5878 36 100.0 30 .................................... ACTGAAAGCCCTATTCCAGCAGCAAGCGGT 5812 36 100.0 30 .................................... TTATTAATAAACTGAAAAAGGGTTCTATTG 5746 36 100.0 32 .................................... CCCCGTATTAAATAATTTTGTGATCGCGTCTG 5678 36 100.0 30 .................................... TTGTGACGTTGTAGCTAAAAAAGATGCGAA 5612 36 100.0 30 .................................... TGGATTTAAATGGTTATGGGATAACGTTGA 5546 36 97.2 30 ............A....................... TCAAGCTGCATTTAATCAAAGTATTCAAAC 5480 36 94.4 29 ................G.................C. ATCTGATGAAGATAACTACGCTGAAAAAA 5415 36 72.2 0 ......A..T...A......A..G..A.G...T.TA | ========== ====== ====== ====== ==================================== ================================ ================== 23 36 98.4 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGACAAGTTGACTGCAACAATTAGCGAGTTAATAGGCTATGAGCTATTGGAACATGAACTGGATTTAGAAGAAGATGAAATTACAGTTATTGAATTATTTAAAGCGTTAGGAATAAAAATAGAAACTAAAAGCGATACAATTTTTGAGAAATTAATTGAAATTGTACAAGTCTATAAATATTTATCAAAGAAGAAGTTGCTAGTTTTTATTAATGTATGTGCTTATCTTACAAAAGAAGAGTTGTTAGAATTAAGAAGGTATATTTCTTTGTATCAAGTGAAAGTTCTGTTTATTGAACCTAGAAAAATAGACGGCTTTCCGCAGGCTATTTTGGATCCGGATTATTTTCTACATGTGGAAAATGGTGTTTAAGGACAGGTGTTCTTTGAAAATAAAATATTATTTAATTAACTTATTAAGCAGCATTCAAAATTGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTTGGAGGATAGAAAAAAATCTACGAG # Right flank : AGAAATAAAATCTTTCACATCAAAAGTTCTTGGTAGCCTTTAACAAGGATTATAAAAGTTCAAAAAGGAGCTAAACCAACCACATGACACAATATCACTACCTCGCTTCAAAGTCGCTCCTACAAAAAAATGAAGATAAGCTTGCTTCCCCTTTCTTCTATATAAACGATCTAGATTTCTTAAACTTAAATTTCGAAGCAAACATCGACCGTGATACAAATGGTTTATTCTCCTATTCAATACACTTCAACCGAGCTTGCAAATTTCAAATTGCCATAAGTGAAGGGGAATTACCGTTAAAAGACGAAGTGCAAAATAACAATTACGAATCTAAAAGTTTAAAAATCTTATACGATTACATTATAAAAGCGAGTAAAGAAAGTGATACACTTGAACTATATACTTCGTGGAACGGCGAGGAGAATCTTCCTTTAACGAATAAAACAGAATTATCCATAGAGAATTTAACTCTTGAAAGCTTGATTTTGAGCGACAGAGAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 254173-254977 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHV010000001.1 Listeria marthii strain FSL W9-1217 NODE_1_length_910590_cov_56.081791, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 254173 29 100.0 35 ............................. CTTTGAGAATCAGAAGCAAGCCCCTCAGTCCCAAC 254237 29 100.0 35 ............................. ATCCAAGTAACGCCGCGCGCCGGATTTCCTAATTC 254301 29 100.0 34 ............................. GGCGAACCGGGCGGGCAAAAGTTTTTCACGCAAC 254364 29 100.0 34 ............................. GCTCTTCGTATAATATTTTATTGAGCTTATGTGC 254427 29 100.0 37 ............................. TATTCCTGAAACAGATGTTGAATTTGATGAAATTGAA 254493 29 100.0 36 ............................. CCGAAGAGTTTAGGGGCCACCTCAAAGGCTGCATAT 254558 29 100.0 36 ............................. ATTTTAGTGCTATCGAGGCACGTGTTATTGCGTGGC 254623 29 100.0 36 ............................. TCCAGCTTGAAAGACGGTTATGTGAATTGTGCTGTT 254688 29 100.0 35 ............................. ACCCATGTGACATAACATTGCCTCCTACTAATTAA 254752 29 100.0 37 ............................. ATGCTTTTTCGATGATTGGTACAAGTGATGGATCTTC 254818 29 100.0 35 ............................. GTCGCTAGGGCTAAAAAATGGATTGAGGAACAACA 254882 29 96.6 37 .......T..................... CCTTTATAATTATCACCAATATGCGCGAATGTCTCCA 254948 29 86.2 0 .......T......A.A......A..... | A [254971] ========== ====== ====== ====== ============================= ===================================== ================== 13 29 98.7 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCCAATATCAAAGAAATCATCACATCCGACTCCATCGACCTTCCAGAAGATAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATCTTAGGCCGCGCAATTGAAGGCGTTCAAGAGAATCGCTCGTTGCATCCGTTGTTTTAAGGGATAAATCAGAAAACAGTAACTCTTAGGGTTGCTGTTTTTTTGCGTTTGGTTATCTGTCGACCTTGAGTAGTGTGAAAAAGGCTGGGTATCGACAGAAAGGTGAGAGTGATTGGCGTGGAGGTAGTTTGGTGGTTTGTGCTTTTGAAAACCATGTAGAGAAGGGTGGATTTTTGTTGGTTTTTAGTTGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TGAGAATTGACTTTTAAAATCCTTACTCATCTTCCAACCCGAACCCGACTCAACAAGATTCGGGTTTATTTTTATCCTCCCCGTTAACAATTCCGCAACAAACACACCAAAAACCCCCAATTTCCTCCGAATCTCCAACTACACCACACACCAAACCTATGCTAAACTCAAAGAGAAAGCCAAAACCACATACATAAAAGGAGGATTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATCCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACCAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAATATCCCGAAAAATATGAAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGCAAAGAAAGCAACACAATTAGTGAAGTAGAAATTTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGACATT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 269908-271306 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHV010000001.1 Listeria marthii strain FSL W9-1217 NODE_1_length_910590_cov_56.081791, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 269908 29 100.0 36 ............................. TCTGATGCGTATAGCTTAATGTTCGATGTGCGTAAC 269973 29 100.0 35 ............................. TCAACATTGACTCTTTATGTCCGACAAGCATCGCA 270037 29 100.0 35 ............................. AACGAAAAACAGTCAGGAAAAACATTTGATTATAT 270101 29 100.0 37 ............................. TTGATAGAACACCGCGTAAAGTAACTGTGAGAGTAGC 270167 29 100.0 36 ............................. GTCAAGAGAGGTATCAGGCTAGGCTTAGTAAGAAAG 270232 29 100.0 36 ............................. TACATATGAACACCTCATTTCTTATATATCTATTTT 270297 29 100.0 38 ............................. TTTTTTAAGGATGTTTTTAACATTTACATTTGCCCAAA 270364 29 100.0 37 ............................. GATTTAGTAAGAGAAGGATTCTATTCTGATATAAAAA 270430 29 100.0 36 ............................. AAAATTTCGGCAGAAAAAGCGTTGGGCCTAAAAAGT 270495 29 100.0 36 ............................. TTAACTGATTCTGTGATTTTTTCAAAATCAGCTTGA 270560 29 100.0 37 ............................. AAAATCAGCAACTTGGGGAGATACTGCAGATACAATT 270626 29 100.0 35 ............................. TTCGTAATGTTAAATTTGAGATTAAGATTATCACC 270690 29 100.0 37 ............................. TTCGCACATACGTTCTTTTTTCGGTAAAAAGAAAAGC 270756 29 100.0 38 ............................. TCTAAAAAATCTATTGTAAATTCCATTAAAATTCCTCC 270823 29 100.0 34 ............................. ATATTAATACCGCAGTAAAATTAAGCAATATTGG 270886 29 100.0 36 ............................. CTCATGAACTCAGAACTACAGCAAGACTATAACGAC 270951 29 100.0 37 ............................. AAAAGAACGGCTAAAAGAATATTGCATGATTCGAGGA 271017 29 100.0 37 ............................. CCTTCTAGATTAGTTAATCTATTTAATACTTGATTAT 271083 29 100.0 36 ............................. TCAGGAAGTAACACAAAACTACTCTCACGCTCAATT 271148 29 100.0 34 ............................. ACGCTTGAAATCAATGGTAAAGAATATGAACTGA 271211 29 100.0 37 ............................. ATATATAACAACGTTTCTTTTTGGTCTTTGTGATTGA 271277 29 86.2 0 ...............C......CA....C | C [271299] ========== ====== ====== ====== ============================= ====================================== ================== 22 29 99.4 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATAATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCAGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAATTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGCGACCTGAGTTATGATGGGAGTAGGCCTAAAATAGAGCGG # Right flank : CTTCCTCTCAACATCCAAACTCCAAAAATAAAAAAGACCTGGACCCCAATCCAAGTCTTTTCCCATACACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAACCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCCATTCCAGCTCCCGCAAAAAACAACCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGCACTTTCTTATTCGCAAGCAGTTCCTTCTCCACGCCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //