Array 1 91852-91458 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBB01000015.1 Streptosporangium violaceochromogenes strain JCM 3281 sequence015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 91851 28 100.0 33 ............................ GGCAGAGCGCATTGTCATCACGGAAGTGAAGCC 91790 28 100.0 33 ............................ CGGTTTCGGCACTTCGGCGGCGGTGGAGTTTCG 91729 28 100.0 33 ............................ GACCAGGGACGGTGTCGAGTGACGCTTTATGAG 91668 28 100.0 33 ............................ GCCGGACCCCACGGGACCGGACTCCAGCCGATT 91607 28 100.0 33 ............................ CTTGTGAGTAGCGCACCCCTATTCCCGCAAGTT 91546 28 100.0 33 ............................ GGGGTGGAGGCCGTCAGGGTCGAGCGCCTGGAG 91485 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 GTCGGCCCCGCACACGCGGGGATGGTCC # Left flank : ACGCCGTGGCCGTGAACACCTACGCCGTCCGAGACCTTCGCAAGGTGGTCAAGCTGCTCGACCGTATGCGGGCGCCAGGTGCGAGAGACCTTGAGGACGCGCTTTCGAGGCCGGCCTGAGCCGGACATGACGACGCCCCGCCGGTCTTCGACGGGGTGTTCGCTTGCAGATCATTGGTTGGGAAATCCGTGGATAGTCCGCAATCGGTTCACGAAACGGCCGTCTGAGATCATTGTTGGTCCCCGCTTCTCAACGGTCAAAATCGCAGGTCAGTATGGGGATTCTGACTTCGATCGCAGGTAGACGAACCGCTGTCGGACGTTCCGCTTCAATGTGTGACCGGCGCGTCGACCACGCCTTTTGGGCTCGTCTCGCGTTCGGATGGATTCATGGGCGGTGAGGGCCTCCGGCGGGGGAGCGGAAGGTGGCGTGCGATGCTCGTAGCTGAGCAACCAAAGGAAACCGAGGCCCCCACCGTCTAAAGGCCCAGGTAAACAAGT # Right flank : GTGAAGTACCGGGAATGGGCATGCGTTTCTCGCAGGTTTCCTGGTTACCGGTTGGCGGCAAGTGCGGCGTAGGCCGTGCTGCCGGCTCGGCCGGGCCGACCACACGGGGCCGGCCGAGGTGCTTCTTTCCCGGAAGCATCCGCCCGGACTCTTGACGGCGCCTGGCCGCGGCGATCCCCTCGGCTTGGCGTTCGGCGCGTAGCTCCAGCTCGTACTCGGCGGTCGCGGCCAAGACCGCGAACATGAAGCGGCCCTCCTTGGTGTCCAGGTCGAAGTTCTCGGTCAAGGACACGACCTTCACCCCCCGCTCACACAGCTTGCCGACCACGGTCAGCATGTGCCCGGCGCTGCGGCCCCACCGGTCGGACTTCCAGAACTTCACCGTGTCGCCGGCTCGCGGCCGGGGCAGCAGGTCCTCTCAGACGGGCCGGGGCACGCCGCGTCTGCCGGATTCCTGCTCCGTCACCAGCGTGTCGTAGCCGCCGGCCGCCAGGGCGTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACACGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCACACGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 95698-94509 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBB01000015.1 Streptosporangium violaceochromogenes strain JCM 3281 sequence015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95697 29 100.0 32 ............................. GCGGCCTAGCCATGGCATCCAGTTACTTCGCT 95636 29 100.0 32 ............................. GTGGCCATCAGCCCCGTCACGAAGTAGGGGGG 95575 29 100.0 32 ............................. GGCAGTTATGGACTGGCCTACGGCCAGGGCTC 95514 29 100.0 32 ............................. AAGTCGTTGGTCGGCGTCGCGGTTGTCTCCTG 95453 29 96.6 32 ............................T TGGAGAGGGCGCTTCCCGCGTCCTCCTACCGG 95392 29 96.6 32 A............................ CACTCCGTCACTTTGGAGCGGCTCGGTCAGGT 95331 29 100.0 32 ............................. GGCATTGAGGTCTGGCCTGCGGCCAGGGCTAT 95270 29 100.0 32 ............................. GGTTTGGCCGATCTCGTCCAGCTTTCGCTGGG 95209 29 100.0 32 ............................. AACGGGAGGGTCCCGGCGCCGGAGCGCTGTGG 95148 29 96.6 32 ............................C CGCCCGCCGGGGGCGCCGGTCGGCGCGGCGAC 95087 29 96.6 32 ............................C AGCTTCTTGAACAGGGTCGGCCCGGACGGCAG 95026 29 100.0 32 ............................. CGCATGACCATCGAGATCGACAACCGCATCCA 94965 29 100.0 32 ............................. TTGGATGAAGTCGGCCAGACTCTCTGGCTATC 94904 29 96.6 32 ............................C CTGAGCAAGGAAATCGCCCTGCTCAATCAGAT 94843 29 96.6 32 ............................C GTAGTCAGGAGGTCGACACCGTCACCAGCAGT 94782 29 100.0 32 ............................. TTAGTACGCCCTCCGTTACCTACGGCCAGACA 94721 29 93.1 32 .............A..............C AGCCCGCTCCACCGACCACTACCCCAGTGAGG 94660 29 93.1 32 ........T...................C CAGCTCCGCGGCCTTGGCCTGGATACCCCGGA 94599 29 100.0 32 ............................. GCCATGCACGCCGCCGGCCACGACACCGTCAG 94538 29 96.6 0 ............................C | T [94512] ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.1 32 GTCGGCCCCGCACGCGCGGGGATGGTCCG # Left flank : CCCTGGAACTCCTTCAGTCCGTCGGGCAGGAGGAGTCCGGCCTGGCGCAGCTGGCCCGCGTCGGCTTCGAGACGCTCGGCCTGCAGACCTACCTGACGGCCGGCCCCAAGGAGACCCGCGCCTGGACCATCCGCAAGGGCGCCACCGCCCCCGAGGCAGCCGGGGTCATCCACACCGACTTCCAGCGCGGCTTCATCAAGGCCGAGATCGTCTCCTTCGACGAGCTGGTGGAGGCGGGCTCCATCGCCGCCGCCCGCCAGGCGGGCCGGGCCCGCATCGAGGGCAAGGACTACGTGATGCGCGACGGCGACGTGGTGGAGTTCCGCTTCAACGTCTGACCGGCGCGGCGACCCTGCTTTTCGGGCTCATCTCGTGTTCGGACGGATTCATGCGGCGGTGAGGGCCCCCGGCGGGGGACCGGAAGGTGGCGTGCGGTGCTCGTGGCTGAGCAACCAAAGGAAATCGAGGTCCCCACCGCCTAAAGGCCCAGGTGAACAAGT # Right flank : GCGCCAGAGCCGTACAGGCACAGCGCGGTGAGCAGGGATTCGAGCACGGGTTTTCCTGACGGTGGATGCGTGTCGCGGGGAAGCGGTGCCCGGCCGGGTCGGACCCGGCCGGGCACCGGGCGCCGGTTGCGGGGGCGAAGACCGGCGCCTGAGCGGTTCCCCTTCCCCGATCGTGCGGGAACCGCGTGGGTGTGCGACCCGAGCCCCTCCAGCCCGGGCCGCACGTTCAGGGGCGCGACGGCGGGGACGGCACTCGCCCGCCGTCGCGCCGGTCTATGCCGCGTCCTGGTAGGGACGGCGGGAGGGGAGCGGCGCGACGGCGGGCACCTGGGAATGGACACCGTCGCGCCTGTTCTGGGCCGGGAGTGCCGGGGGTGCCGGGAGCGCGAGCCAGACGAATGCCGTCTCGGCGTCGCGCATCCGCTCCTCCAGCTCCTCGGCGGTGCCGGCGTCGACGATCAGCGGTTCGGGGGCCGGCCACGCCGCGATCGCGTAGAAGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 458500-464205 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBB01000001.1 Streptosporangium violaceochromogenes strain JCM 3281 sequence001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 458500 29 100.0 32 ............................. GCGGCGGCGAGCCGCTCGGACGGGGTCATCGG 458561 29 96.6 32 ............................C CGCGTCGATGCGGCTTCCGAGAGCACTCATGT 458622 29 96.6 32 ............................C GTAGTCAGGAGGTCCACGGCGTCACCAGCTGT 458683 29 96.6 32 ............................T CATGGCGGCCGTTACTCGCGATGACCTTTTGC 458744 29 96.6 32 ............................C CTGGCCGCGTGCGGTTACTACCGCGTGGAGCG 458805 29 96.6 32 ............................C GTGGTCAGAAGGTCGACAGCATCACCAGCTGT 458866 29 100.0 32 ............................. GCCCAGCGCAAGCTGGACGAGGTTGGACAGAC 458927 29 96.6 33 ............................C CATGCGTCTCCGGTGAAGGTTGCCTTGCCAAAG 458989 29 100.0 32 ............................. TCCTGGGCCGCCGCCCAGCTCTCCGCGTCCGA 459050 29 96.6 32 ............................C AGCTTCGAGGGCGGCACCGCAGGTCAGACGAT 459111 29 100.0 32 ............................. TGGGCGCCCCGTTCGTCTGCCGGCGACACCTC 459172 29 96.6 32 ............................A TCCCGCCTGCTCGGCCGCACGGCCGAGACCGA 459233 29 96.6 32 ............................C TCGGCGACGAAGTCGAGGATGCCGGTCGAGGT 459294 29 96.6 32 ............................C CTTGCATTCCTGCGTGTTGTCGGAGATGTAAA 459355 29 96.6 32 ............................C CACACCATGTTCGACGGCCACTCGGTCCGCGT 459416 29 96.6 32 ............................C GCCTGACGGCGCGCCCGCTTGACGGCACGGCT 459477 29 100.0 32 ............................. GAGCCAGGACGCGGGTCACAGCGGGTACGCCG 459538 29 96.6 32 ............................C GTCGGTGAGCGGCTGGCCCTGGTCGTTCTCGG 459599 29 96.6 32 ............................T ACGGGCCATGTCAGGGGGGCGCCGGCGGGGCC 459660 29 96.6 32 ............................C CATAGGGACCGAGCTCCAGGCCATCCAGTCGA 459721 29 100.0 32 ............................. AAGGGCTGTGGGCGCAGCTCCTTGGCGGCGAG 459782 29 100.0 32 ............................. GAGAAACTGCCCTCACCGCCACGTTGACAGGT 459843 29 96.6 32 ............................C TGCATCGCGCGGTACAGCTCGTGAAGCTCGGC 459904 29 100.0 32 ............................. GACGCCCACCCGGCCGCCTCCTGTACGGCTAC 459965 29 96.6 32 ............................C GTCGGCCAGGCCCGCTCCTCGGCCGCCCGCTC 460026 29 100.0 32 ............................. CTCCACGGCGATTGCGTTTCTTTTCGCCGGGT 460087 29 100.0 32 ............................. GTGCCGATCGTGCCGGTGTCTGAGCGGGACGC 460148 29 96.6 32 ............................C CTGTACGAGAACGCCGGCTACGCCCGCGCCGG 460209 29 100.0 32 ............................. GCCGCGCCGTACAGGTGGGCCGCCGGGTCGAG 460270 29 100.0 32 ............................. GCGTCGTGGACAGGTGCTGCGGTGATCTCGGA 460331 29 100.0 32 ............................. ACGTGGTGATCGGGCCGGGGCGGACGATCCCG 460392 29 100.0 32 ............................. TCAGAGTCTGCGGCTACGTCTGGTGCCTATGA 460453 29 100.0 32 ............................. CCGTCGAGGGTGACCTGGCCCGGTCGACGCTG 460514 29 96.6 32 ............................C TGGCGGGCCGTGCCGACGCCCTTCGTGCGCGG 460575 29 100.0 32 ............................. TGCCGCATCACCGCCGTGGGGTGCGGGCCGGA 460636 29 96.6 32 ............................T GCAGATCACGGCGCCAGGTCCTCGGGGATCGG 460697 29 100.0 32 ............................. TTTTCGCGCTCGGCGCGATGATCGCCCCCGGC 460758 29 100.0 32 ............................. CGCATTGAGTTCGGACCGGCGTACGACCTGCT 460819 29 96.6 32 ............................C TCGTGGCGCACTCATTTGACGTGGCCGGTGAT 460880 29 96.6 32 ............................C CGGTGCAGGTTGAGGCGGTCGTCGCCGGTGAG 460941 29 100.0 32 ............................. AAATCGGGCGGCTGGAGCGGGAGGTGAGCAGC 461002 29 96.6 32 ............................C CGCATGTCCGACCGCCGAAGAAGTGTCGAGGC 461063 29 96.6 32 ............................T GTGATCAATTTGGGTCGTAATGGTCTGCGTGA 461124 29 96.6 32 ............................T GTGATCAATTTGGGTCGTAATGGTCTGCGTGA 461185 29 96.6 32 ............................T GTGATCAATTTGGGTCGTAATGGTCTGCGTGA 461246 29 96.6 32 ............................A TGGTTCGGGCCCTCCTCGTCCTCGTCGAGGAG 461307 29 96.6 32 ............................C TGGCCGGTCGGGTTGAGCACGCACAGGCCGAC 461368 29 100.0 32 ............................. GCCCGGTTGACGGGGCTGTGCCCGTCGCCGGC 461429 29 96.6 32 ............................T GATGAGCAGCGACGTCCCTCCTTACCGGCTCT 461490 29 100.0 34 ............................. CGCTGGAGGCGGGCGCGATGACGATCAACGAGGT 461553 29 100.0 32 ............................. CGCCGCCGTCGCCGTCGGCGCCCAGCGGCTCC 461614 29 96.6 32 ............................T AGTACGAGCACGACCCGGGGAGGCCGCCCATG 461675 29 96.6 32 ............................T GAGCAGCGACTTCGTGTCGAGTCCCATCATGG 461736 29 96.6 32 ............................C CAGCCGTTGAAGGAATTCCAGCGTCGCCGCCG 461797 29 100.0 32 ............................. ACATCCTTAGTCGGTTCCTGGATCAGGCCGAT 461858 29 93.1 32 ..........................T.T GCCCGGAGGAGGAGGACCAGGCGCCGGCGGAA 461919 29 96.6 32 ............................T CGGATGTAATTTCCCGATCCGTCCCAATATCC 461980 29 100.0 32 ............................. CCGGACGGTTTCGCCGACGTGCCGCACGGTTT 462041 29 96.6 32 ............................C GGTCACCCGGGCACCTCGGGAAGTGTCGGCCT 462102 29 96.6 32 ............................A GCCCTTCAGGTGCCCGGGGGGACGACCGGCGA 462163 29 96.6 32 ............................C AGATGGCGGCGAGTTTGAGCAGGGCGAGGAGC 462224 29 96.6 32 ............................C CGCGGCGGGCACGAGGTGCCCTGGCCGTGCGA 462285 29 100.0 32 ............................. ACGGTCGGCTGAGCGCGGCGGAGGACGCTGTG 462346 29 100.0 32 ............................. CGCGCTGCTGGAGGTGGCCCGCGCCGCGCAGG 462407 29 96.6 32 ............................T CCGGGCCGCGAAAGAGGCTGAGCTCGCCGCTC 462468 29 96.6 32 ............................T CAAGGTCCGCGACGCGCTGCTGCGCACCGCCA 462529 29 96.6 32 ............................A GTGATCGAGCTGGCGCCGATGGGGACGACGAC 462590 29 100.0 32 ............................. GACGAGCACGACCGCCGCCAGCCCATCGGCCG 462651 29 100.0 32 ............................. GCGGAACGCCAGCGCCGCAAGCGGCAGCAGAT 462712 29 96.6 32 ............................T AGTGAAGATATGCGGGAGGGTAAGGAGGAGAA 462773 29 96.6 32 ............................T AGTCGGCGGCGGCGTCCGGCGCCGTGAGGTCC 462834 29 96.6 32 ............................C CCCACTTCTTCGGATGCACCGTCTTGCACCAT 462895 29 89.7 32 ................T.......T...T CTCGTACGTGTGTGCGAGCAGTTCAGGGCCCA 462956 29 100.0 32 ............................. CGCGGCACCACAGACCTCGATCCCGTGGGCCG 463017 29 100.0 33 ............................. CCGAGCTTGATCTCTGGCAGGCCGAGTCGCGCA 463079 29 100.0 32 ............................. CCCCGAGGAGGCGTCACGTGCCGTCCGGCCTC 463140 29 96.6 32 ............................T TTCACCTCCTACGCGGTGCGATAGTGCGACAC 463201 29 96.6 32 ............................A GGACGCCCGATCGAGGGCGTCCTCAACATGAC 463262 29 96.6 32 ............................T CCCGTGATGGAACAGCCAGTCGCCGTTGGCGT 463323 29 96.6 32 ............................T GGATCACCGGCTCCCGTGCTCTGTCCCTTCTC 463384 29 96.6 32 ............................C GGGTTTGTCACCTTGACGGCGTGGCAAGTAAG 463445 29 100.0 32 ............................. CATTGATCGGGCCGATCCCTCACGGACTGGTC 463506 29 96.6 32 ............................C GGGTTTGTCACCTTGACGGCGTGGCAAGTAAG 463567 29 100.0 32 ............................. CATTGATCGGGCCGATCCCTCACGGACTGGTC 463628 29 100.0 32 ............................. CAAAATGTCACCCTGCATGTCATCCCCCAAGG 463689 29 96.6 32 ............................C CCGTGTGGGACATCCTGACCCAGACCGCGCTC 463750 29 96.6 32 ............................C CCGGCGGCCAGTCCCGGGATAGAGCTGGGGTA 463811 29 96.6 32 ............................C CTGCGGTTCACCATCAACTCGGTCACCGTCAG 463872 29 100.0 32 ............................. GCCCGCGCGATGGCCAGGCCGAGGCCCCTGGT 463933 29 93.1 32 ...A........................C ATGGCGGCCGACCGCGCCCCGTAGCGGTGGCC 463994 29 100.0 32 ............................. TGCCAGCCGTTACGGCACCGCTCCACCCCCAT 464055 29 96.6 32 ....A........................ GTGTAGTCACGGCGTTCGATCTGCTCGGGGGT 464116 29 96.6 32 ....................A........ CAGCAGGTCAGCCCGGTCCTCGCAGATCTCCG 464177 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 94 29 97.8 32 GTCGGCCCCGCGCACGCGGGGATGGTCCG # Left flank : GTGACAGGCATGATCAGCGCGATGTGACACACCTTTCCAATCTCGGCCAGCCCGGCGACACACCGGTCAAGGGCGGCGACGGCTGCGGATGCCGGTGGATCACGGTCGATCGTACCTTCAGGTCGGATCCCGTCCGGATCGCCTGACAACATGCCCCGGCCCGCCTACTGGTCGATGGCGGCTGTGAGGGGGAATCGGCCGCTTCCGATCTTGGGGACACCGAATCGCCACCCATACCGATCGCGACGAGATCGCCTGGCGTGTGGGTCAACGGCCAAGCACGCCAGGCTCCTTCGGCTCCCTATCGGCTGATCTCGCGATCGGCACACCTCACCCTTGCCCGTTTCAGAGCTGGCATGCAATGCCTGCGGTACGGTTCAACGGACATGTGATGACGACGCCGGAAGCGCATCGATCCCGGAAGGTACATGCGGCACCCACGATTTGAGCAACTAAAGGAAAACGGGGCCTCCGCCGCACAAAGGCCCAGGTGAACAAGT # Right flank : GGCGGCAAGGGCGGTCGTGCCGAGGACACGGCCGATCACGGCGTGGCGGCGAGACGCCGCTCGAAGATCCGGTCGCGTTCCCTGGCGAGGGCGAACATCTCCGGGTCAGGGTCGCCGCCGAACAGCTCGCGCAGCTTGGCGAGCACGGCCTGGCGTGGCTCGGCGAGCACGGGCGACGGTTCGGCGGGCTCTACCAGGGGCGAGATCTCGGCGTCCATGTTGGACGGTTACCCCGGGGCACCCGATGTCACCGAGCGATCCGTTCTCGCTTGCCCGTCAGCGCACCGGTACGAGCGTGGACGGCTCACCCAGCCACACCTGCTGGCGGCCGTCCGCGGTGACGGTCAGCCCGAACTCCTCATGCCCCGGCCGCCCCTGTCCGTACCACCACCGGTGGGCGGCCTCGACCTCGTCCCATAGGCTGCGCGGCCCACCCTGGTAGACCCGCGAGTCCGCAGAGGCGTCCTCGTCGAAGAACACCGCAGCCCACGACAGGTCCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.52, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5326-4567 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBB01000017.1 Streptosporangium violaceochromogenes strain JCM 3281 sequence017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5325 28 100.0 33 ............................ CCGTTGTCGCAGTCCACAGTGGCCCCGGAAGTC 5264 28 100.0 33 ............................ GCACAGGCTTCGAGGTATGGAGCCCTTCCTCAG 5203 28 100.0 33 ............................ GCACAGCAAGAGACCCCTGATCGCTCCTGGTTG 5142 28 100.0 33 ............................ GGGCACAGCTAACATTTGCGTTTCTCGCGAGAT 5081 28 100.0 33 ............................ GTTGCCTGCGGGAGATGCGAAGGGTATGGCGAG 5020 28 100.0 33 ............................ TGTGTCCTCTATTCCGCGCAGGCCATTTGTCGG 4959 28 92.9 33 .....................G..G... GCTGAGCAGGCGTTATTTCAAAGCGTCCATGGT 4898 28 96.4 33 ......C..................... TGCACCGGGTGTTCCGCCAGCTGTTCAACCGGC 4837 28 89.3 33 ......C...T.............G... GTAGTCGTACACTCAGGCCCCTGTCCTTCCTCG 4776 28 89.3 33 ......C..........C......G... GCTCGTGGAAGCCTTCATCACGGGCTGTGGACG 4715 26 85.7 33 ......C.........--......G... GTGACCGCCACCGATGCCGTCTTCGCCGGCCAG 4656 28 96.4 33 ......C..................... TTGCTGCGATCGCGACGACCAGATGATCTGGAC 4595 28 100.0 0 ............................ | C [4578] ========== ====== ====== ====== ============================ ================================= ================== 13 28 96.2 33 GTCTGCTCCACGCGCACGGGGACGACGG # Left flank : GTACGGCTCGGCCATCGTCGAGACCGGCCCCCATGAGCCGACGGGCAGAACCTGCTCGGCGTGCGCGACGGCGAGAACCAAGCCTGTCGCTCCCGCCGACGAGCGGTTCACCTGCCCGTCATGCGGTTACAGCGGTGACCGCAGAGTCAACACCGCGCGAGTGCTTGTCCGGCTCGCGCACACCAGTGACGCCCCGAGTAGCGGGGAGTCCCTAAACGCCCGTGGAGGGGACGTAAGACCAGCCGCGCCTTCGACACGCCCCGGCGGCCAGACTCCGACACGCCCTAGTGGTCATATAGCGGTCCACGCTCTAGGGAAGGACGAAGAAGGCCGTGACAAGGGGAAGGACAAGGAGTTCCGCGGAAGGCGGTCCCCAATGAAGCGGGAAGCCCGCTCCCGGCCGCCCGGCCGGGGTAAGGCGGGCACTCCGGACCCGTAAGGGTCGGGCGTCCCTAACAACTTCATAGCGGACAGACCTCATAGTGCGCAGGTCGCGAAGT # Right flank : GGCACCTTGCGGTGAACATCACCTGGTAAATCTGATGTGATCAGCCCGGAACTGATGGCCGTGAGCTGGAGAAACGTCTCTGCCCTGAGCGCTACCGCCAAAATCGATCGGATCCTCCCCGGAGGCCGGGACGACGGGGTAGACGACCGGTGGGGCGTGGGCGTCGTTGTCCACCCAGGCGGGCGGGCCGGCGTCCGCGACGGCCTGGAGCGGCACCAGGTGCTCCCAAGGCTCCGCGCCGGTACGGCCGAACGCCTCGACAACAGAGAGGAACCTCTTCCACTCAGCCCTCTGCCGCCGGTACCGCTCCACCACCTCCGCGACGAGCTCCGGCACCCCCAGCCGTTCGGCGACCCCGTCGAGTTCTTCGGGCCCGCGGACCCACCCGCCGCGTGTTCGTTCGGCGAGGCCGTGCTCGGCCAGGGTGCGCAGGCCGGTGGAGACCGCGGTCGGTGACAGGCCCGCGAGCCGCCCCAGCACGGCGGCCTGCGCAGGCACAT # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCTCCACGCGCACGGGGACGACGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 278257-276390 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBB01000003.1 Streptosporangium violaceochromogenes strain JCM 3281 sequence003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 278256 29 96.6 32 ............................G GCCCTCCGCCAGGGCGGTGGGTTCCGTGCGGC 278195 29 100.0 32 ............................. CGGCTGGAACAGGCCGTCGACTACCCGGCCGA 278134 29 96.6 32 ............................G GGTAGCTTCTGGCAGGTCCGGCGTATTGAGCC 278073 29 96.6 33 ............................A GGCCAGACGTAGCGCGTCGGCTGTCTCATCGTG 278011 29 96.6 32 ............................G GTACAGCCCGGCGTCGGCGAGCGTCGACCCAA 277950 29 100.0 34 ............................. ACCACCTGCCGACAGGCTCGCTCGTGGAGTGGGA 277887 29 96.6 32 ............................T GGCTGCGCACCCCAGGTAAGCGACGCGGCCGC 277826 29 96.6 32 ............................T CGCCGATGACGCGCCGCCGGGTGATGTGGCGT 277765 29 96.6 32 ............................G GCGCTGATCGGCGGGTTTACCGCCATGCTGGG 277704 29 100.0 32 ............................. CTCGCCCGCGCCCAGGTGCACGCGACGCTCGC 277643 29 96.6 32 ............................G ATCGCTTACCTGTTGTCGTGTCCCTGGTGCGC 277582 29 100.0 32 ............................. GCCACGTCGCCCTGACGGCGCGAGGCGGCATC 277521 29 96.6 32 ............................T CCCCCGTCGCACAGAACCGCCTTACCGACGCG 277460 29 100.0 32 ............................. CTGTGCTTGGCGAGCCAGGCGTCCTCCCGCGC 277399 29 96.6 32 ............................A CTCGGAGGGGCCTGCGTGTTCGGCTCGACGGC 277338 29 100.0 32 ............................. CGGCGTGCCGAACTCACCCGCACCCTGTACGG 277277 29 96.6 32 ............................G CCTGACCCGTACCCGCCCCCAGGCCACACGTG 277216 29 96.6 32 ............................G CGGTCGAGCGAGACCTCGACCGGCGCGATCCG G [277205] 277154 29 100.0 32 ............................. CCGAGCTCCGCCCGGCGCAGGACCCGGACCCA 277093 29 100.0 32 ............................. CGTCGCCGTCCGCCGGATCATCCCCTACCCGG 277032 29 96.6 32 ............................T TGAGGGTGTCGACGTAGCGCAGGATCAGACAC 276971 29 96.6 32 ............................G GGCTCGTCTCTCCTGCGCTCCCCTGGCGGCGG 276910 29 96.6 32 ............................A CACTGGAGGAGCGGCGCAAGCTCCCGCCCCGC 276849 29 96.6 35 ............................G TCCGATGACGCGACCGGCCTGGTGGGTGCCCGGTC 276785 29 82.8 32 .G...T.G..TC................. CACACCGAGACGTCGCGGTTCGTCTCGCGGGT 276724 29 96.6 32 ............................T GCCGGAATCGACCACCCCGCCCTGATAACGGC 276663 29 96.6 32 ............................T CGGGCGTGGACGGTACGCGCCACGCGGAGCGC 276602 29 96.6 32 ............................T CGGGCGTGGACGGTACGCGCCACGCGGAGCGC 276541 29 96.6 32 ............................T CGGGCGTGGACGGTACGCGCCACGCGGAGCGC 276480 29 93.1 32 ...A........................T CGGGGGAGGTCTGGAGGTGCTGCGTGGTGGGC 276419 29 100.0 0 ............................. | G [276394] ========== ====== ====== ====== ============================= =================================== ================== 31 29 97.0 32 GTCGGCCCCGCGCACGCGGGGATGGTCCC # Left flank : CCCCTCGTCGTCCACCCGCTGGAACGCGGGCGTGGCTTTCCCACAGTCGTGGATCCCGCACAACCAGGAGAAGAACAGCCGCCCCCGGCCCCCCGAGACGTCGTCCAGCGCCTGCTTCGCCGACGGCGCCAAGTAGTGGTCCCAGATCTGCTCCGCAACGGCAGCAGTGTCCAGAAGATGCGATAGCAAGAGGTTCATCCTACCTCCCGCTTTTTTCCGAGATTTACCCCAGAGAACTGCTAATTGTCGGATTTCGACTGAATCGCAACCCAACGCACGAAATAAGTCTTCCGCCATTCACGCCTCCCTTCAGGTGAGCAACATAGAACCCCCCACCGACAAAATCTCTCCCTGAAGTCCCTGCGATATCGTTCAAGCGGTACACGACGTTGACGACAGGACCGAATTCAGAGATCAGGAAAACCCAAATGAAGCCTCCGCTCTCTGAGCCACTAAAGGAAAACGCCCCTCTCCACCACTAAACCTGCAGGTGAACAAGT # Right flank : GCTTCCTGGAGTACGGCCGGCCGTCGGTTCCATGCCGTCGTGCAGGTCTGCCGGCTCCTGCCTTGTCGTGGAACGCGAGCCGCCCTTGTCATAGGCCACCGGAATACGGACACAAACGGGTGGCGGACGCGAGCGCCGCAGGCGAGCGGTCACAGCGGTGGCGGGCGGCCCGTACGCGGCCTCGCCCGTCACCGGCTCGCGGTCAGGCGTCCCAGGTGACCGGGAGGCTCTTGACCCCGTAGATATCGGCGGTCTCCGGGCGCAGGGCGACCTCTTCGGCCGGTACGGCCAGGCGCAGCGTGGGAAAACGGTTGATCAGCGCGGGGAAGGCGACCCGCATCTCGACGCGGGCCAGTTGCTGGCCCAGGCACTGGTGGATGCCGTGGCCGAAGGCCAGGTGCCCGCCGTCCTGCCTCCGGAGGTCGAGCAGGTGGGGATCGGCGAAGCGCTCGGGGTCGCGGTTGGCGGTGTTGAGGGACAGGATGACCGTCGTACCGGCC # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.39, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 296366-295605 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBB01000003.1 Streptosporangium violaceochromogenes strain JCM 3281 sequence003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 296365 29 100.0 32 ............................. GCGTCGCCCGCGGCCTGGAGGAGGGAGACAAG 296304 29 100.0 32 ............................. CAGCCGAAGGCGTTCACCGCCCCCGGCGAGAA 296243 29 100.0 32 ............................. AGCCCACCGGCACCGCCGGCAGCGCCGGAACG 296182 29 100.0 32 ............................. TCAAACACCTGTTTGGGGCCTTTGCTGGCCTC 296121 29 100.0 32 ............................. GTCCTGGCGATCCAGCTGCCCGGAGTCACGAC 296060 29 100.0 32 ............................. CAGGTGGGGTGAGAGAAACGTCCGCTCGCGGT 295999 29 100.0 32 ............................. CAGGGACAGCGCAGGTCACAGGGGGCACCCCG 295938 29 100.0 32 ............................. TGTTACCGCGCTGCAGCTGACCATGACCGGCT 295877 29 100.0 32 ............................. AACGGGCACGACACCGGGGACCACGACCCCGG 295816 29 96.6 32 ............................T TCGGCGTGGCAAGGATCACGATCCGCAAAGTC 295755 29 100.0 32 ............................. TACGACGACGGCGGAGGGGTATGGGAGGAGGA 295694 29 100.0 32 ............................. CTGCGGAAGTCCGCGGCCAGCTCGTCGCCGTT 295633 29 82.8 0 ..A..................G....GGT | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GTCAACCACCCCGACCCGCCGACAGGAAACCCATGAAAAACACCACGGCCACCCCATACATCGAGCCCCTGCTCACCCCCGCCGAGGTCGCCGCCCTCTTCCGCGTCGACACCAAAACCGTCAACCGATGGGCCAGAACCGGCAAACTCACCTCCCTCCACACCCTCGGAGGACACCGCCGCTACCGCCAAACCGAAATCCACGCCCTCCTCCACGGCAACCGGGCAACCCAACCGGCCGCCCCCCAAACCGCTGGCTGAACCCCCCAACCCAACCGGGAAGAACACCCCTCTCCCGCAGGAATGTCACAGCACGCAGGAAGCGCTCCCTCCCTGGCTGGTAACGGCAGCACGCCGTACAAGAGCAACCCGCCAGGCGTTACTGTGTTCCGACACCGACGCCGCAACCCCGGCCACCAACCCCCTGAGCCCGAAATGTCCGAATCATTGAAAGTGCTCTTCTTCCGCCTCTCCCGCCGATAAACCCCCAGGTCAACGAGT # Right flank : CACGGTTTCGCTCCGTTCGCCGACGACGCACCGATGCCGGGCTGAATGTCGTTCTTTCGTGGCTTATGCCATTCATTTCCACGATTGTGTTCATCCAGAGGCGCGCGTGAGAAAAAGCGAGAAAAACCCTCGCCCGAGCCATGGGGTCTCGCCGCAGCGGGTGGGTTTCGGTGGCGAGTAACCGATCGGGGCCGGTCCGCGATGTCCGCCACCAGGCGTTTCGCCGTTCTCCGGCCGGTGATTTCCGTACGGACTCCCCCGCCCGCGAAACACACGTGAAACAGGCGGCGACATCCGTCCCGAAAACAAGAATCGCCTATAACCTACAGGTACACTAGGTTGGTATGCCACGTTCACCATCGGTCGTCGTCGTGGGGGGTGGCGCGAGCGGCGCCCTGGCCGCGATCCACCTCCTCAGGCACGCGCGGGCCCGCGCGATGCCCCTTGAGGTCACCCTGATCGACCGGGACGGCCGGCACGCCCTCGGCCAGGCGTACTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22452-22241 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBB01000024.1 Streptosporangium violaceochromogenes strain JCM 3281 sequence024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22451 28 100.0 33 ............................ GCACCCCCACAAGGACGACACCGGTAAGCGGTG 22390 28 100.0 33 ............................ CGTCTCCACGGGCCGTACAGGGCCGGGGAGCGA 22329 28 100.0 33 ............................ CCAGTATGGCGCGACCAGTTCAAGGGGGGCGTC 22268 28 92.9 0 ....T........G.............. | ========== ====== ====== ====== ============================ ================================= ================== 4 28 98.2 33 ATCGCCCCCGCACACGCGGGGATGGTCC # Left flank : CCGTAACGATGAGGCGCGCGAGACCCTGGACGCCCTTCTCCGGCTCGCGCAGGGCGGGGTCACCGCCGATCCGCTGGGGTTCTGGAGGGAAAACCAGGTCTATTTCGCCGAAAGCTGGGTCCACGCCGGAGCGGGAAACGAGGCCGCGGCGGACAAGGCCGGTTCCAGAGTGGCCGGCTTTACCAGTGACTACCAATACCGGGCGAACGTCGCCCTGCATGGAGCCTGGTGCACGGTCGTCCGGGGCGGAACGGACGAGGGGGTGCGCCGGGCGGCGGCGACGATCGACGCTCTGCAACCGGCGTACCGCAGCACCCACATCCTGGAAACGGGACGGACGATACTCCGCGCCGTTCCCCTCGACCAGCAAGATCGCCCAGCCGTCGGCGAGTTCCGAGAGGTCTTGTCTGTCGAACCTGCGAGAAGCGTCTGAGCCGGAGGCGGCTTCGCAACCAAAGGAAATCCCGCTCTTCAGCCGCTAAAGTCCCAGATGAACAAGT # Right flank : AGATCCCGCTGCACCGCCGTATGCGGGCCGAGCCGAAGCAGAGGCCGGTGGCGGGCCCGCCGCAGATGGCCGATCCGGGCCGGGGGATCCGATGAGCCGGGCGTTTCGGGAGCGGCGCCGGGTGGTGGTCGACGACGGCGAGGGCGTGGTGCGGGCGTTTTCGCCGCGGTGAGGGCGGGTTGCGCAGGCTGGGCCGGGGTCAGTGTGTGGGTACGGTCTGCGGCACGGGGGCGGACGGCTCGCCCAGCCACACCTGCTGCCGGCCGTCGGAGGTGACGGTCAGCCCGAACTCCTCGCACTCTGGCCGACCGCGCTCGGCCCACCAGCGATGGGCGGCTTCGACCTCGTCCCACAGGTTCCGCGGGCCGCCTTGGAAGACGGGTGAGGCGGCGGGGTGGTCCTCGTCGAAGTAGACCGCCGCCCAGGACCGGTCGTCCAGGCCGTACAGCCACAGGGCGGGGGTGCCATCGCTGTTGTGGCCGGCGATGCGCACGCAGCCG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCCCCCGCACACGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCACACGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 231584-229847 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBB01000004.1 Streptosporangium violaceochromogenes strain JCM 3281 sequence004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 231583 29 96.6 32 ............................C ACCTCCGGTGCCGGGTCGATGGGTGCGGGCAA 231522 29 100.0 32 ............................. CCATTGACGACTTCATCGCGCACGGCGGCGGC 231461 29 100.0 32 ............................. GCGGCAGATCATCGGTACTCCTCGTCAACGCC 231400 29 100.0 32 ............................. AAGTCATTGGTCGGGACCGCGGTCGTCTCGGA 231339 29 96.6 32 ............................C CGTCCTGTTCGGTGAGGGCCGCGCACCGGAGG 231278 29 100.0 32 ............................. GAAAGTGATGCGTGATGGCTGCCACGCCCATC 231217 29 100.0 32 ............................. GCGCGGACAGCGCCCTCGTCGACGGTGTGCCG 231156 29 96.6 32 ............................T TCGCGAAGGGCGGCCCGACCGCGGCGGCGGCG 231095 29 100.0 32 ............................. GAGCTGGAGCGTGCCGAGCTCGCCCAGGCCGC 231034 29 100.0 32 ............................. GAGATCGAGATGCCTCAGGGCGACAGCCGGCA 230973 29 100.0 32 ............................. GCCGAGGAGGTCTCCATGGTCACCGGGCCCGT 230912 29 100.0 32 ............................. CAGGCGGTGCGCTCCCTGCCGGTGACGGGCTC 230851 29 100.0 32 ............................. CTCGCGCCGCCTGTGATCCAGGAGGCCCGTGT 230790 29 96.6 32 ............................C CGCGTTTCGCCTGCTCGCTCACAGCCTCGATA 230729 29 100.0 32 ............................. TCCGACAAGGCCGGGGTTGAGGGCAGCAAGCA 230668 29 100.0 32 ............................. GGGGTGGAGGAGTACGGGCGGGGCGGGCGCGC 230607 29 100.0 32 ............................. GAGCCGTGCCCGCCTCCCGCGGGGGCGAGGCC 230546 29 100.0 32 ............................. CCGAACGGGGGCCGTAGATGAGTCAGCTGTTC 230485 29 96.6 32 ............................A TGCGAGACCGGGGTACCGTCCTGCTTGATCAT 230424 29 96.6 32 ............................A CCGGACATGGTGCTTTGGGCCAGCCGCGCGAA 230363 29 96.6 32 ............................C TACGCGACCACGAAGACCGGCTCCAACCGGGT 230302 29 96.6 32 ............................C TACGCGACCACGAAGACCGGCTCCAACCGGGT 230241 29 96.6 32 ............................C TACGCGACCACGAAGACCGGCTCCAACCGGGT 230180 29 100.0 32 ............................. CGCGGCCCGAGCCGGGAGCCCGGTCAGCGGCG 230119 29 96.6 32 ......................C...... GAGGACCGTTGAGCGACGACCTGGCCACCCGA 230058 29 100.0 32 ............................. ACTTCGAGTGCGGCGGCTTCCGCCGCCGCGCA 229997 29 96.6 32 ........................A.... CTTGGCCTGTCGTTTGGCGGCGCGGGCCATCG 229936 29 100.0 32 ............................. CGACGCTCACGGCCGTGGCAGCCACGGCACCC 229875 29 93.1 0 ........................T..G. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 98.5 32 GTCGGCCCCGCGCACGCGGGGATGGTCCG # Left flank : CTTCGGAAACGATACCGAGCAGAAGCGCCGTGGTGTCCAGGTCGAGCGCGCGGGCAAGGGAGTTGATCGTGGAGATGCGGGCCGACTGCCGTTGGTTCTGTTCCAGCTTGCGGATGGTGTCCACGTTGACGCCGGAGCGTTCGGCGAGGAGCTCTTGGGTGAGGCCGTTGATGGACCGGCGGGTTACCCTGAGCCGCTCACCGATGGTCATGTCCGGGCGAAGTTCCATCGCGTTGCGATCACGCATAGCCTCACACCTTCCTTCTCGACGCCTTCAGAGTAAGCGCGCAGGGCTCCTTTGGCCCCTGCCAGGTGATATCTCGGTCACCCTTGGTCTCGGCCGTCTCGGAACCGCAGGCGATGCTTGCGGTACGGTTCAACGGACGTGTGACGACGACGCCGGGAGCGCATCGGGGTTGGGAGGTGGCATGAGACACTCACGCCCTGAGCAACTAAAGGAAAACGGGGTCTCCGCCGCCTGAAAGCCCAGGTGAACAAGG # Right flank : GCGATCTGGAGGACGGCGGGGGGACGGTGAACGCCGGGGGCGGGTTGTGCGGGGGCGGGAACCCGCTCGCCGGCGTTCGTGCGGGCTGGGCGGCCACCGGTTCGGGGTGGCCGCCGGCGCTCTTCGTGGACCCGGTCGTCCGTCAGGTGTGACCCTGGCGGGGGTCGGTCAGGCGTGGCCGGCGGGGACGGTGCCGAGCCGACCGGCCTTGTAGTCGTCGAACGCCTGGACCAGCTCCTGGTGGGTGTTCATGACGAACGGGCCGTAGTGGGCGACGGGCTCGCCGATGGGCTCGCCGCCGAGGACGATGACCTCCAGCCCCGAGGTGGGCGAGGCGGTGATCGTGATGGTCTCGGCATCGGTGGCCAGGCCGGGACGGTCGCCGAAGCCCTCGAAGACGGCGAGCTGCCCGCCGGTGATGGGTGCCTTCTCCGGGCCGGCGCCGCCTGTGCCGGACAGCACGTACGCCAGGGCGTTGAAGTCCTTGCGCCAGGGCATGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 41314-40307 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBB01000038.1 Streptosporangium violaceochromogenes strain JCM 3281 sequence038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 41313 30 96.7 31 .............................C GGAGCCGCCCGCCGACGCTGGTGAGGTCTTC 41252 30 100.0 31 .............................. GGCGACGCGGCCGACCCCCCCGCGTTCTGGT 41191 30 96.7 32 .............................C CCGACTCCCGGTAGACCTGCTCCAGGTAGCGG 41129 30 96.7 31 .............................A ACACCGGGCTGTACTCCCACAGGTCCAGGTC 41068 30 96.7 31 ............................T. CGGAGCTACGGGCGCAGATCGCCCTCTTGCG 41007 30 100.0 31 .............................. ACGGCAGCAGCCTCAAGGACGCCGTGCGCCG 40946 30 96.7 31 .............................A GCAGGCCCAGCCCCCCGGCGACGGCCCCGGC 40885 30 96.7 31 .............................A GCAGCCGGTCGTCGGGGATAACTCGCGTGGC 40824 30 96.7 31 .............................T GCACAATCTTTCCGGTTGCACTCATCAGGTC 40763 30 96.7 31 .............................C ACGTAGGTGTGGCCCGGCAGCAACCCGTTCA 40702 30 100.0 31 .............................. TCCGGTTCTTCTCCGAGACGCACGAATGCGA 40641 30 96.7 31 .............................C TGCGCCGCAACGCCTCAGCCCGCTGGATGTG 40580 30 100.0 31 .............................. GCCCTATCGATCTCCGCCTTCCCCTCAGCAC 40519 30 100.0 31 .............................. TGACGGGGACCACACGACGAACGTAGGCCGC 40458 30 96.7 31 .............................C GCGCCAAGGGGTCGCAGGCCAACCAGCGGCG 40397 30 96.7 31 .............................A GCACCTCGTGGTGCAGGACTTCGCCGGAGTT 40336 30 93.3 0 ...........................T.T | ========== ====== ====== ====== ============================== ================================ ================== 17 30 97.5 31 ATGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : GCCCTGCCGGACTCCGCGGTTTCCTGACCCGCTGGCTGATGGAGATATCACCCGGTGTCTTCATCGGCGGCCCGTCGGCGCGGATTCGGGAAGTGCTGTGGGCCGAGGTGCGGCAGTACGCCGACACCGGACGGGCCCTCATGGCGTACAGCACCGACAACGAACAGGGCTTCGCCTTCGAGACACACGACCACAAGTGGCACCCGGTCGACCACGAGGGCCTCGTTCTGATCCGTCGGCCGAAGGACCGGCCGGCGGTCTCTTCGGCGCCGCCGCCCAGCGGTTGGAGCAACGCCGCCAAGCGCCGCAAATACCGACGGTGATGACAGTGGGCTCCGTTGGACGAACGCCGTCTCGACGGCCGCAGACCCGACGACTCCGCGGCTGAAGCTCTTTCTCCGGTGAGGACAGGGGTTGTTTTCAAGGTGGGCGAAATGTCTGAATCATTGAAAGTGCTCGAAATCCGTGCCCGCCCCGGGTAAACCCGCAGCTCACCAAGT # Right flank : GGGGCGTTGTGGTCGACTCTATGATCGTCCGCGCTGACCAGCATGCCGCCGGGGCCCGTCGGCGAGGTGATCCGAGGGAGACGGGTTAGGCCTTGGGCTCCGCGTTCTTCGGTTTGCCCGGCCGCCAGAAAACGATCAGTTGCAGGGCGGCTCCGCCGACTCCGGCGACCACGGTCAGGATCAGCTGTCCCCATCCGCCGCCGAATATGCCGAGCGCGCTGTCCACCGACCAGCCACCGCCGCCCAGTCCGCCGATGACGACGGCGCACGCGGCCAGCACGAGCACGTACTCATATCCTTCGCCGGGGCGGAAGATGAAGAAGCCGTTGCGCATGTGGTTGGTGATGAACGCCACCACCATCACGCCCAGCATCGCCGCGGCGCCGAGGGGCGTCAGCAGGCCCAGTCCCACGAGCACGCCGCCGCCGATCTCGGTGAGACTCGCGGACCAGGCGTGCATCAGGCCCGGCCGCATGCCCAGCGAGTCGAACCATCGTGCG # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 51609-52431 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBB01000038.1 Streptosporangium violaceochromogenes strain JCM 3281 sequence038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 51609 30 93.3 31 ............................AA AGGACGCCGCCTCGACGGCCGACCCGTCGTG 51670 30 100.0 31 .............................. CGGTGGCCGCCGCGCACGCTCCGGCCGACAT 51731 30 100.0 31 .............................. CTCCCCCCCACGCGGGGGCGGTAGCACGAAA 51792 30 93.3 31 ............................AA AAAGTCGGGCCCCTGCCTATGGGGGTGTGGC 51853 30 100.0 31 .............................. CGACTGGCGTCACCATCCCCGTCGGGGAGAC 51914 30 100.0 31 .............................. ACTCGGTGTGCACCGCCCGCCGCAACTCCAT 51975 30 100.0 31 .............................. TGACGTTGTAGAGGAGCGCGAGGTACTCCAG 52036 30 96.7 31 .............................A GCGGCGACGGACAGCCCGTCACACACACCCT 52097 30 96.7 31 .............................C GAGTGTGGGAAGTCGACAACGACAAACCCTC 52158 30 100.0 31 .............................. GTCCGTACCGCGCGAGCACTGCGCACGCCTT 52219 30 96.7 31 .............................A TCCAGGCGATGTGGGCGTCCACCCAGCGCGA 52280 30 96.7 31 .............................C CGGCTGATGCCTGGTCGAACGTGGTGCGGCC 52341 30 96.7 31 ..A........................... GCGACGACGCCAGCATCACGCCCACGTTCAA 52402 30 93.3 0 ...T.........................A | ========== ====== ====== ====== ============================== =============================== ================== 14 30 97.4 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : AGTCTGACGACTTGCATGTTGCTACGTCTTACCGCGTGCATGTTCATGAATACAAACACGACAGAACGCCCAATTTCATACAATTCATACAAAAGACGTCTCTAATGACATAGCTCACTTGTCGGAATGAGTGCACCTGAGACAGCATTTACCCACACAGCAGGAAGGATATGGAACACTCAAGGGAACAGGCATGATGGTGGAGTCGCTCCCCGCGCATGCGGGGATGGTCCCATGCAAGTGGTAAGACTCACATGCTCCCCGCGTACGCGGGGATAATCCTGGGCAACATTCGTCGGCGCCTGGGCCTCCTGCGGAAACCCGCCATTCCAGCAGGGCGGCCCTGCGTCGACACCCCGCGCACTCCTTCCCCATCGCCGAGCCTCACCCGGCCTCACACCATCAGACACCTCAAGGAGTAACCAATGCCCAAAATGTCCAAATTTTCAAAAGTGCTCAATTTCCACACTTCTCACGGATAAACCTGCTGGTCAGCCAGT # Right flank : GGCGGCGGGTGAGGTGGGGGACGGTCGCGAGGTGCGGTTGCGTCCACGGAGGTGGTGTACGAGTTTTCGCTGGTGACAGGCGTGGCGTCGTGAAATGA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8266-8114 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBB01000046.1 Streptosporangium violaceochromogenes strain JCM 3281 sequence046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 8265 30 100.0 31 .............................. AGCGCTTCAAGGCCGCGACCGCGAACCGGGA 8204 30 96.7 31 .............................T AGGGGGCTGCTCGCACGGTGAACGGGTTGCC 8143 30 96.7 0 ..............G............... | ========== ====== ====== ====== ============================== =============================== ================== 3 30 97.8 32 GTGCTCCCCGCGCACGCGGGGATGGTCCGG # Left flank : TTGCAGATGCTCATCGACTCGGAGCGGTGGAGCAACGTCGGGCGGGATCACGACGAGGACGTCTGTGGGCGCGATTGTCCGGTCGACCACGTGGCTGATGATGTTCTGAGGGAGCTGAGGCTCCTCGCCATGAGGGCCGATATACCGATCGTTGTCACCTCGTCGCTGGCCGGAGGGTCGAGGGAGCGGCGGCCGGGACGGCTCGATGTCACCGATGAGGTCGAGCAGTGGTCCGATATTCTGCTCCTGCTTCACCGCGAATCTCAGCGTTCATCCGAGCCCGGCGTTCAGGTGTGCGGCAAGATCGACTTTAGTCTCGACTGGTCCAGCACCTTGCGGCTCCAGGGCTACCTCGCTCGCGCCATCAACCTCGTCTGAAGGCGGGGTCGGCCCGGTGTGTGCGGGGATGGTCCAGAGAGGCTCGGCACCCACGCCGGGCGGGGAGAGGTGATCCTGCTGGCCGACGAGATGGCAGGCGGCTAGAGTGCAGGTCAGGAAGT # Right flank : GCGTCACGGTCATCGACCGGTCCCGGAACGCGTCGGCCCCGCGCACGCGGGGTGTTGCAACGACCTCTTGAACTGAAGTTCGGCCGGGGCTTTCGCGTGACGGCCGCCCCACCCCGGCCGAGCTCGATATCGCCCCTGAGACGATCGCCGAGTATCCGGATCAGCCTTAGCGTCGTTTCCTCAATGTGGCTCCACGCGACGTTGCCATTACGCAACCATGAGGGTCATGTCAGGACGCATTCTGAAATGGGCAGGTATTGTCCTATTTTTCGTCACGATAGGCGCGATGGGTCTGTACTTCTCCTCGGTCGGACTGGATCAGGCCGATCAGAGGGCCAGTGTGGTGGGCGCGCTCGCTGGCGTGGCCAGTCTGCTCTTGGCCGTCTATGGGATGTTGGCCTCCCGCGCGACGCCGACGCCGGCATCTGCTGAGGACACCCTTGCCGCAGCCAAGAAGGCGCTGACTTCTGCCGTGTCCCAACAGTGGCGCACCGAGGCGA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //