Array 1 250-1088 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYWN01000108.1 Lysinibacillus meyeri strain WS4626 NODE_111_length_24815_cov_52.242153, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 250 33 100.0 35 ................................. TAAACATTCCTGGTGCATTAGTAAAACTGGCTATC 318 33 100.0 34 ................................. GATGTAAACATGTCTCCTACGTTGTAACCATTAT 385 33 100.0 35 ................................. GTCAATAAGCCCTTGGCTCAAACCTCTGAATTCTA 453 33 100.0 34 ................................. AAACGATTAAAGGCGAAAGCATTTGCAGCTTGCT 520 33 100.0 34 ................................. GTAGAAGTTGAAGGAAAAGCGACGAAAGAAGAGT 587 33 100.0 33 ................................. ATGGCAATATAAGGTACACAAATGATTTAGGCG 653 33 100.0 34 ................................. TTTTATACTTTTAAATACTACTACAAAGGCTTTT 720 33 100.0 35 ................................. ACCCCAAAAGATAAAGCCGCTCCGTCCTCCCTCCC 788 33 100.0 33 ................................. AAAAATATATTCATTATAATATAAGTGCAGAGA 854 33 100.0 34 ................................. CGTAGACAAATCTACCACTAGATGTCGAATTTTG 921 33 100.0 35 ................................. AGTACATTGATTCGTAGCTGCGTCAACAATGTCAC 989 33 100.0 34 ................................. TACATGCCATATTAGGAAATTGCCAGTATCTAGA 1056 33 97.0 0 ...........................C..... | ========== ====== ====== ====== ================================= =================================== ================== 13 33 99.8 34 GTTTCTTTCTGTATAGAGAGAATGGATTGAAAT # Left flank : AGAAAATTCATTTTACAATAGTGCAATTAATTATTTTAATGCGACACTAGTGAATAGATATATAGTCTTTATTATCAAAAATTTTAGTTGGTGCGAATGGGAAGTGAACATGATTTACTAAGGAGATTCGCACTAATAAAACAAAGATTTTTTCTTTGAGATGGGAAAGTAATTAGGTTAATATAGTCATATATATTTATTACTTAGTGGAAATTTGCGATAAATATTGTTTTTATGTGCTTTTTCACAG # Right flank : TTGCGTAAAGTCTATGTCACTCATAACTCTTAGCCATTCATCTGTATTATGAAAGGTAATTTCCTATTAAAAACCAAACGCATCAATTTAGAGACACTTTTCTAAATTGATGCGTTTTTGTTGTGGTTATAAATATTGGTGAAGGGTATTTTCAGTAGATAGGAAATATGTTATAAATAAATGAAATGGATAATGAGGGATTTTATCCTATTTTAGACAAGATATTAGGAGCTATACGGATGTTTACATATATGACTTGGGTAACATTACGCGCAACATTTGAAGCGCGAAAAAGTGGTAATTTACCACCATATCTTGGTTCTACGGTACGAGGGTTGTTAGGGCATAGTTTGAGAAGGATGGTATGTCTAACACCAAAGGTAAGGTGTTCTACGTGTGCACTTGCGGAGGATTGTGCCTTTACGAAGTATTTTACATCACCAGGAAATCCAGCAGGATCGGTTAATCCATTTGTACTTCACGTATTAACGACAGGCAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTTCTGTATAGAGAGAATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.70%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 11323-11690 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYWN01000108.1 Lysinibacillus meyeri strain WS4626 NODE_111_length_24815_cov_52.242153, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 11323 33 100.0 34 ................................. CAGACACAGGCGCAGGCGCTGTCCGCATTGATGG 11390 33 100.0 34 ................................. GCTTCAATTGTAGAAGTCGGCTCTTTAGTATCAA 11457 33 97.0 34 ..........................A...... ACTCCATGACTCGAAATCATCCAATTTGAGCCCG 11524 33 97.0 33 ....................T............ ATTTCGCTAATAAGGTTAGCTTCTAAATCATCA 11590 33 100.0 36 ................................. AGCTAAACTGAAATTCACTAAAAATTTGAGCAATCT 11659 32 72.7 0 ........ACA....A...T..-AA...A.... | ========== ====== ====== ====== ================================= ==================================== ================== 6 33 94.5 34 GTCTCTCTCTGTATAGAGAGAGTGGATTGAAAT # Left flank : GAAAGTATGATATAAGTTATCCTAATATAGATGAAATGAATAAGAAAGCAGAAGCATTGCTTCATATTATGCAATATCCATCAGATTTCCAAGAGCAAATTCAATATCCCAAAGTGTATAGTGAAAAACAGGGAGTTAATGCTACAGCTTCACATAAGTGGTTTGCTAAAAACATGGAGAAGAATTATTTTAATCAAGTTTTACCAACGATAGAGGAAGAATTCGAACCTAAGCAAGCTGAAAAATAGTTGAGGGTAAAAAAAGTATAATTATTTTGCAAGAACTTAAAGATATATGAAACTTACGTATTTTAGCTGAATTTTAAACGTTCTTAACAACTGGTGCGAATGTGAAGTAAACATGGTTTTCTAAGGGGATTCGCACCAATAAAACAACTTGTTTTCCATTGAAATGGAAGGTTAATTAGGTTAATATGACCTTAGAATCTAATTTTTTAGTGAAAATCAGTGATAAAAGCTATTTTTATATGAATTTTCACA # Right flank : TGCTACAAGTTTTAGGTAATGAAAAAATATATATTGTGGCTTTAAACTTCAAAGTAGCTCAACAAAGGGTAAGGAAGGAGCATAGTTAACAATATTTTGAGTCCTAAAAAATGGAATAAAAACAGACGGAATTAGTGAATAGTGAGTGCGAATGTGAAGCGCACATGATTTACTAGGGGGATTCGCACCAATAAAGCAGATTGTTTTCCATTGAAATGGGAAAATAATTAGGTTAATATAACCCTATAAGTTTATTTTTTAGTGAAAAATAGGGATAAATATTATTTTTATATGATTTTTCGCAGTTTCTCTCTACATAGAGAGAATGGATTGAAATTCCTTTGTGTGCTACAATAGCACTGTAGTATTTTGTTTCTCTCTACATAGAGAGAATGGATTGAAATGCTAATAGCAATCCTTCCTCAAACTGTGGAAGACATGTTTCTCTCTACATAGAGAGAATGGATTGAAATATTAAAATTAATTGGCGTTTTCACTTT # Questionable array : NO Score: 8.98 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCTCTGTATAGAGAGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCACTCTCTGTATAGAGAGTGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 11994-12558 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYWN01000108.1 Lysinibacillus meyeri strain WS4626 NODE_111_length_24815_cov_52.242153, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================================================================== ================== 11994 33 100.0 34 ................................. TCCTTTGTGTGCTACAATAGCACTGTAGTATTTT 12061 33 100.0 36 ................................. GCTAATAGCAATCCTTCCTCAAACTGTGGAAGACAT 12130 33 100.0 35 ................................. ATTAAAATTAATTGGCGTTTTCACTTTCTCACCTT 12198 33 100.0 36 ................................. ATTATTACAACAGTTTGGCTGGGGCGTTGATCGAAT 12267 33 97.0 35 ....................C............ AAAGGTCTGTATTCCGACAATATCATTTGGCTTAA 12335 33 97.0 35 ....................G............ ATATCTATACAGATGATTGGACGTTGGGGCATTAA 12403 33 87.9 90 ...........TC......A...A......... CATACTGGTATTTAAACACTTCACTTCAACCTAGTTTTTAGAGAACGAATTGAAACATGTTAGCCAATACCTGATTTCTAATTATTGTAA 12526 32 75.8 0 ......T..CT....-.A....GA....A.... | C [12539] ========== ====== ====== ====== ================================= ========================================================================================== ================== 8 33 94.7 43 GTTTCTCTCTACATAGAGAGAATGGATTGAAAT # Left flank : CATGACTCGAAATCATCCAATTTGAGCCCGGTCTCTCTCTGTATAGAGAGTGTGGATTGAAATATTTCGCTAATAAGGTTAGCTTCTAAATCATCAGTCTCTCTCTGTATAGAGAGAGTGGATTGAAATAGCTAAACTGAAATTCACTAAAAATTTGAGCAATCTGTCTCTCTACATATAAAGATAGAAATTAAAATGCTACAAGTTTTAGGTAATGAAAAAATATATATTGTGGCTTTAAACTTCAAAGTAGCTCAACAAAGGGTAAGGAAGGAGCATAGTTAACAATATTTTGAGTCCTAAAAAATGGAATAAAAACAGACGGAATTAGTGAATAGTGAGTGCGAATGTGAAGCGCACATGATTTACTAGGGGGATTCGCACCAATAAAGCAGATTGTTTTCCATTGAAATGGGAAAATAATTAGGTTAATATAACCCTATAAGTTTATTTTTTAGTGAAAAATAGGGATAAATATTATTTTTATATGATTTTTCGCA # Right flank : TATTACACCGCCTACTTGTACAGATTTACTAGCTTTTGCTTCGCCCATCCATTAAACCTCACCCCCAAAAACCACAAGAGAAGCCACTATACAGCAGCTTCTCTTGCGTTTCTTATTCATTCATTATGCGGACCATCCGCACCCACCTTAAATTGATCAATTTGTTGTTCCATTTCTTGGCTCATCATGAGGAGCTCCTCGGATGCCATGGCGACAGTTTTGGTTGCTTCGGTTTGTTCTAGGGTGGAGCTGGTTACTTGTTCCGTTGCGGCAAGTGTTTGGTCGCTGGCGTTTAAGATTTCGTGCATTTGTTGCTGGATTGTCGATGAGAGGGAAGTGGCTGAGGACACTTCTTCATCGATTGTATGGATAGCTGCCAGCATGTCGGTTACGTGCTGTGACATTTGCTGGAAGGCAGATGTCGTTTTTTCGACAGCGTTGAGTTGAATCGAGAATTGCTCGTTGGTTGCTTGCATTTCAGATGTTGCCACTTTGGATTG # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:0, 3:3, 4:0.74, 5:0, 6:0.25, 7:-0.69, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTCTCTACATAGAGAGAATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 38773-38116 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYWN01000056.1 Lysinibacillus meyeri strain WS4626 NODE_58_length_40970_cov_53.957336, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================================================================================================================================================================== ================== 38772 33 87.9 35 ..C.......G...G......G........... TTGTTTTGTTGCCATCATTGGTAACTTAACATCAC 38704 33 87.9 35 ..C.......G...G......G........... CAAAGTAGCATCTACTAGCTTCGAAAAGCCATTAC 38636 33 81.8 184 ..C.......GT......T.C..A......... CTCTTGCCTTGATTTAAACAAGTAAGTGCGAATGTAAAGCAAACATGATTTTCCTGGAGGATTCGCACCAATAAGGTAGATTATTTTCTGTTTAAATTGGAAATGAGTGAGGTTAATATAACCTTATAGATTTATTTTTTAGTGAAAAACAATGATAAATATTATTTTTATACGTTTTTTCACA 38419 33 100.0 34 ................................. TGTAGCATAGCGCTATACTGACTAGCCGTTCCCG 38352 33 100.0 35 ................................. AAATTAAACAGCCTCCCATAAAATGCATGGAAGGC 38284 33 100.0 34 ................................. GACGTATCTCGCTCCAATGCGTGAAGCCAAAGTG 38217 33 100.0 36 ................................. ATGGGACGTGTTACGAGGTCGCCTCTATTGGGGATT 38148 32 81.8 0 T.....-.A.....T....A........A.... | T [38137] ========== ====== ====== ====== ================================= ======================================================================================================================================================================================== ================== 8 33 92.4 56 GTTTCTCTCTTCATAGAGAGAATGGATTGAAAT # Left flank : TGGTTTATCAGAATTGCCAAAACCCCTCCAATCTATGCCTATACAGCGATAACCCATAGCTGGGAGAACATTAAACTGATATTCAAACTGTTTATGACTTAGCGACCAGCCATGTAAAAATACGATTGTTTTATTTCCTTTTGGATTGATATCTTCTACATATAAATTCACCCTTGGCTCTACTGGAACAAAGTACCCCATAAAGATTCCTCCCAGCTAATGTGATGTCCATAGTAAGATATTCATGTTTATTAATCTAGATGAATATCCATCTATGCTATTTTAATTGACGGCACAATTAGCATATAAAGATACGTTGAATCGCCAAATAAATATTATTGGTGCGAATGTGAAGCAAACATGATTTTCTAGGGGGATTCGCACCAATGACACAAACATTTTTCCATTGAAATGGGAAAACTTTTAGGTTAATATAGCCTTATAGATTTATTTTTTAGTGAAAAACCATGATAAATGCTATTTTTATATTGTTTTTCACA # Right flank : AATGCTACAGCCTTTACTCCTTCATCTCTCTATAAAATAAAAAATATCCGCTGAACGAAAGATAAAGCTAAGCAGACCTGTACAGTACATATATAACAGAGCCATCTAGCTGGAGAAATCCACGATAGATGGCTCTTTAGTCACGTGCCCATATAATAGCATTGCCTTTACTTATTTAAACAGCTATAAGTATTTGCTAATAGGCTACTTTCTGAAAATAGCGATAAACCTTCTCCAGTTTTTTCTGTTGTCTCCCTTTTTTGCTTTCCATATTGCCAAATTCAAAAAACTTTACCCGCTTGATTCCAACAAAATTAAACAATGCCCTTTTCATCAATATTTTATGTGCATTTTGCAGCCATAACAAAGAATAGCTGGTCGGTGCTTTCATTGTAGAAACGCAGACAACGGATTTGCCCTTCAACAGTCCTTCTGGCAATAAACCTTTGTCCCGATAGGCAAAATTAGCTGCGAAAAGCTGGTCGATATAGCCTAATAAC # Questionable array : NO Score: 3.59 # Score Detail : 1:0, 2:0, 3:3, 4:0.62, 5:0, 6:0.25, 7:-2.26, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTCTCTTCATAGAGAGAATGGATTGAAAT # Alternate repeat : GTCTCTCTCTGCATGGAGAGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 5817-4641 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYWN01000064.1 Lysinibacillus meyeri strain WS4626 NODE_66_length_23497_cov_47.043068, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 5816 33 100.0 36 ................................. ATATGTGCAATTTTCCAAAGGAATAACATGGTCAAC 5747 33 100.0 35 ................................. TTACAGGTATACATTGTGGATTTCGAATTAGCGAT 5679 33 100.0 34 ................................. TCATAATCTTAGGCAGCTCTTTAGGAATAGCTTT 5612 33 100.0 34 ................................. TTTTGTAAAGAAACCAGTGCTTTTACTAATGTAC 5545 33 100.0 33 ................................. TATCATCATAGGTCTGCATTGTGAGTATAGACG 5479 33 100.0 33 ................................. ATGTAAATTTTTTGTATAAAGAAAGCCCTCCAC 5413 33 100.0 36 ................................. TCCCTCCGCGCTTGCTGATTCCGCCGCCCCATCATC 5344 33 100.0 34 ................................. TCTAAATAAGAAAACGTATTTTTATACATTTTAT 5277 33 100.0 34 ................................. ATCCAAAAATTGGTAATTAAAATTAAAATACTAC 5210 33 100.0 34 ................................. TACAGGAGGCAGATTCAAAAGACATCATTTTACC 5143 33 100.0 35 ................................. CTGTTAAGTCGATAATCGTGATGCCATCGTTATTA 5075 33 100.0 33 ................................. AATTAGATAGTGAATAATCTTGTGTATTTCATG 5009 33 100.0 33 ................................. ATTGTTGCAACTTTACCATTTGCAACATATATG 4943 33 100.0 36 ................................. TACAAAGGATGAACAGCGTTCTTTCATTGTCAAATC 4874 33 100.0 34 ................................. AAAGGACGTATTTACGACATACAAGCCATTTTAA 4807 33 100.0 34 ................................. ATTACTTGTGGAATGAACAATACACCTAAACCAT 4740 33 90.9 33 .............CA...A.............. ACGGCTTGTAATATTTTGAGCTTTTGGAAAAAG A [4718] 4673 33 72.7 0 ....T.....AC..A...AA...AA...A.... | ========== ====== ====== ====== ================================= ==================================== ================== 18 33 98.0 34 GTTTCTCTCTGTATGGAGGGAATGGATTGAAAT # Left flank : AAAATCAACGACGCAAAAATAATGACAAAATCAATCTCATGGCGCTGCTGTTGCATATTTAAAAATGACAGATTCCGAATGACTCGATGTGGCATAGCAAGCTCCTGCAAAAAGAACTGCACCTCATCCTCACCCGAAATACCAGCATTCACCATAGCTAGCTGTTCCTTAAAATATAAATAATCAGGATGCACCTCACTTACTCGTCTAACAATCGCTTCAAGTTGATGAAGCCTCAAATAATATCACCTCCATGAATAGTATAGCTGTTTTTTCGAAAGATTTAAATAATTTAAAAATAGATATGTGAAATTAATTTAAATAGTTTAATAAAGATGTGGTGCGAATGTGAAGCGAACATGATTTTCCCAAGAGATTCGCACCGATAAATCAGATAAAATTCCATTGAAATGGGAAATGAATTAGGTTAATATAATCGTATAATCTTGTTTTTTTGGTGAAAAATAGAGATAATTATTAGTTTCCTATTATTTTTCACA # Right flank : CAACTTTTCAATAAAAAATATCACCAAAAAGGCGTGTCCCGAAATTAATTTTCAGACACGCCTTTTATGATATTTTACATGAACCGTTCATAAAGCTCTGGTTTGCTTATTGCGTCGCTTTTTCCAATGCTTGAGCAAAGTCAGCGAGCAAATCGTCTTCATTTTCTAAGCCGACAGAGAAGCGGAACAAGCCGTCTGTAATGCCGCGTTTCAGGCGTTCTTCAGGCTCCATGGCTGCATGGCTCATTTTTGCTGGGTATGATAAAATCGATTCCACACCGCCAAGGCTGACCGCGAAAACAGGAATTTGCATCGCTTGGACAAATTTCTTCGCCACTTCATAGCTTGGTAATGTAAAGGATAACACCGCACCAGCAGAAGTGCTCTGCGCCGCATGAATGTCGTAGCCAGGGTGTGTTTCTAAGCCTGGGTAATAGACCTTTGCTACAAGTGGATGAGCTTGTAAATATTGGGCAATTTTCATTGCCACACGGCTTGAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTCTCTGTATGGAGGGAATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 16232-15592 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYWN01000012.1 Lysinibacillus meyeri strain WS4626 NODE_13_length_26647_cov_50.093967, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 16231 33 100.0 35 ................................. TAAGAAAAAAGAAAAGGAACGCAAACGTAAGTGGT 16163 33 100.0 35 ................................. CCTTACATCCATACGCTCCATTTCAGCAGCCGAAC 16095 33 100.0 35 ................................. AATTTATCCGAAACTGTAGCGACACGAACACCTAT 16027 33 100.0 35 ................................. ATGAAAATATGTTGTTGCGTGAAACACTTAAACAA 15959 33 100.0 33 ................................. CGTCTATTAGTGTTAATGTATTTTTTATCACAC 15893 33 100.0 35 ................................. CTTGAAAGGCTTAGTCGGCACTTGCCAAACACTAC 15825 33 100.0 34 ................................. CATTTGTGTATAGCTGTTTTGCATGATAGTTAAC 15758 33 100.0 34 ................................. CCAGCTGCTAACAGTATGCAAGATTTTGGTGGGC 15691 33 100.0 34 ................................. TGTAACCGTCATACTCTTTCCGTGGCGAGGCGGC 15624 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 10 33 100.0 35 GTCTCTCTTTGTATGAAGAGAGTGGATTGAAAT # Left flank : AACAATTTAAACCACAAGCTGCTTTAACGGGAGCAGAAGCAGCAAGCGTTTTACAGTCATTATTTTAATGGATGACAAGTAGTGGGGCATGAACGTAACAGTTTGTCCATAAAACAAAGCTATTTTGCATGCTATAAAAGGGTTTGAAATCAAGGTTTGCACTCTGATTTCAAACGCTTGATTTTGATTTTATATTCCAGTGAAACTTTATGTTAAAATATATCGATTATAGTATGATAAAATGGAAGGTATACATTGAATTTCTTTTGTCATACGTGTAAAGTAATCTAAATTGTTTAATTGTAAAATAAACAAGCTACATCATAGCATTTTTAATAAAAGTGCGAATGTGAAGCAAACATGATTTTCCTAAGGGATTCGCACCAATAATGCAAGTGATTTCCCATTAAAATGGAGAATTTTTTAGGTGAATATAACCATAGAGCCTTACTTTTTAATGAAAATCAATGATAAATATTATTTTTATGTTGTTTTTCACA # Right flank : AACGCTATTAGGGTATGCATGTGTTTTCTCTGACCGTTTCTCTCCATATAGAAAAACAAAAATCAATCAAGCTGATCAAATTCTATACCCTATCAATTATTACACCCTACAGTAACTAAGTGCTGTAGGTTTTTTTGTATTTTCTCGAAGTTTTTTATACTTTTATGTAACTTTTTAGGGAGGTGTACGTCTAAGCTAAAAAGGGGGGCTGATTATGAAGAGGCTGATGTTTACCGTTGTTTGTAGCTGTATGCTTGCAGGATGTGTAACGCAGCAGGTGGCAATTCCGAATAATACATACGATTTTTTTGCAGAGGATATTGTTTCGAAGACTCGAAAAGGAATTGATAATGTTGAGCGCTTTTATGCATTTTTTAATAATGTCGAAAATGGCAAGCGCGATCAAGTAAGAATTGTTGAGCAGACGATTGAGGGTAAACCTATTTATGTGGATGTTCGGTATAGCAATAGCAAAATTGATTTGAAAATGGATCGCTCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCTTTGTATGAAGAGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 10460-12173 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYWN01000185.1 Lysinibacillus meyeri strain WS4626 NODE_195_length_12268_cov_56.130013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 10460 33 100.0 35 ................................. CAAAAAAACACATAGAAATGTACAAAGAAAATGAA 10528 33 100.0 34 ................................. CAATCTCGAATCTACAAATCTAAAATACGCTCGC 10595 33 100.0 33 ................................. AATTTGAACTTAAAAGTAGGCAACATTGAAAAC 10661 33 100.0 34 ................................. TTCAATGGCTCCATTTCTTTAATAGCTTGTTCAC 10728 33 100.0 34 ................................. CAATTAATGAAGATAGTGCAACTTACGCTATACC 10795 33 100.0 35 ................................. TTTTTAACATTACCGAACATCTGACCAATACCTTC 10863 33 100.0 34 ................................. ACGAACTATCATTGACTTAGGTGAATCAACAAAT 10930 33 100.0 35 ................................. GATCTCAAAGGAACAATAAGGAGTGATACGGATGT 10998 33 100.0 35 ................................. GTTACATTTATCTTCAAAAAAAAGTGTCCAGTCAA 11066 33 100.0 33 ................................. TTGTGTAATGCGATTATTTACACTTATATTAAT 11132 33 100.0 34 ................................. ACCATCAGTAGCAATCGAATGGGGACCTCCAAGA 11199 33 100.0 34 ................................. TTACGTTCGGTATCTAAAATTTTTTTTACCTGTA 11266 33 100.0 37 ................................. TGGTACACACGAGGCTCCTTACTATGAGGCAGCTGGT 11336 33 100.0 34 ................................. TAAAAAATCAAGCTTTTTACTATACTCTAACTGT 11403 33 100.0 35 ................................. TCGGAAACAACTAAGCTAATTAGTTGAGTTTTCAC 11471 33 100.0 34 ................................. TTAAAAGTATATTCGTCAATTTCTCCACCGAATG 11538 33 100.0 34 ................................. CTCATATTCCCAATCGTTTTTGACATATCTGCCT 11605 33 100.0 34 ................................. TCAGTTTGATCTTGTATCATTTGTTGTAGGGAAA 11672 33 100.0 35 ................................. ATTTATCGATGCGGAAACACAACGTTCGGCATGGG 11740 33 100.0 34 ................................. ACCACATGCACATTTAATCGAAGATGGGCACAGA 11807 33 100.0 34 ................................. CAAACAAGAATTTCATTGTTTGATGAATTTGGAC 11874 33 100.0 33 ................................. TCACCAAATAATACATTTATTTGTCGTTCATTG 11940 33 100.0 34 ................................. TACCATTGCTAAAATAATGGCTGTCACTAAAGAT 12007 33 100.0 34 ................................. CTCATTTTGTATATCTTCAAGATGCGCTATTAAT 12074 33 100.0 34 ................................. CTGTTGTTACAGCTATAATTGTGTCATACTCATT 12141 33 87.9 0 .......................A......GGC | ========== ====== ====== ====== ================================= ===================================== ================== 26 33 99.5 34 GTCTCTCTCTGTATGGAGAGAGTGGATTGAAAT # Left flank : GAATATCCACCATTTTTATGGAAGTGAGGGATTGCTATGCTGGTATTAGTCACGTATGATGTGGCAACGAAATCAACAACAGGTCAAAAAAGATTAAGAAAAGTAGCGAAAACATGTGAAAACTACGGAGTCCGCGTCCAAAATTCCGTTTTCGAATGCATTGTAGATGCCACACAATTTAAGCAATTAAAATTGCAATTAATGGACATCATTGATCCTGAAAAAGATAGTCTACGATTTTATCAATTAGGTAACCGCTACCAGTCAAAAGTAGAGCATATCGGTGCGAAAGAAACCTTTAATGTAGAAGAAACTTTAATTTTATAGTGTCAAACCTGCTGGTGCGAATGCCAAGCGAACATGATTTTCCTAAGGGATTCGCACCTCTATTTTTGCTAATTATCCATTGAATTGGTAATTGATTTAGGATAATATTACCTTGAAAGCAAAGTTTTTAGTGAAAAACAGCTTTGTTTATTAACTTTCGGTTGTTTTTCACC # Right flank : TATAGTACTCACGTTGTGTATGGTGAATTTAACCAACTCTACCTATAGAGTAAAAGCATTGACTGAGATTTTAGTTAGAAAAATGAAGAGAATAGATATCACTAGCGTCGCATAAAAGCTGATTGAATTTTCTGTTTTTAAGCTTGTTC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCTCTGTATGGAGAGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: F [matched GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //