Array 1 1-410 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALVZ01000129.1 Xenococcus sp. PCC 7305 scaffold_00129, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1 37 100.0 35 ..................................... ATACCAAATATCAAACGCAAATTATCGGCAATGGT 73 37 100.0 40 ..................................... GGAGAAAGCGAAGATATCGGCAAGATTACCGTTAATCGAA 150 37 100.0 39 ..................................... ATTTGCGGTTTGTAGCGGACTTGAATATCAATATCAGCA 226 37 100.0 37 ..................................... GTATATGGGTCGCTTAATCCTTCAACATACCACCGAG 300 37 97.3 37 ......................G.............. TATATTGAGTCCTGGACAATCCTGGACAGGTATTCAG 374 37 89.2 0 ...........C..........G..A.A......... | ========== ====== ====== ====== ===================================== ======================================== ================== 6 37 97.8 38 GTCGCAAACCTTATAATCCCAACTACGGGACTGAAAC # Left flank : | # Right flank : CAAAGCTGAAATAGGAAATAAAGAACCGCAGTTAATACATTTTGATAAAAGTTGAAGTTTGTGGCGATCTCGAATAAATCTGTTTCCCAGTGCGCATCCTGTTTTATGCTTAATAATATACAGATTCATGTCAATTGTCGCTTACTCCATTGAGAATAGGGAATCGCGATCAGTGCACCCAAAATAACATAGGATATTAGGGTCGGGACAACCTTGACCATCTCTTGTGCATTGCTTAAGTAAGCGATATAAATTGCTAGACCTACATTACGGGCGACACAGGCAATAGCTAGAGCCGAACGCTTGCCAACTTCAGCTTCTCCAAAGATATGCCCAATTGCTAAAGAAAAAATTACCATGAGCACAATTGCTACCAGTGGGAAAGCGCCGATTTGAACCATTAGGCGAAAACTGGGAATTATCAGGAGAATAATCAATAGCAAAAATAAGCTATTAGCTATCATGATAATTGGCTTAGCGATCGCAGACGTAATTTTAGG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAACCTTATAATCCCAACTACGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 32290-32846 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALVZ01000180.1 Xenococcus sp. PCC 7305 scaffold_00180, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 32290 35 100.0 36 ................................... TTTCATTTATTGTACTGTTATTTTTACAGAAGTTGT 32361 35 100.0 37 ................................... AAAATGTTGGCCTTGGGGTGTTTTACGGAATTCAAGA 32433 35 100.0 41 ................................... TTTCCCCTAATTATTCACGGGGCGTGATTTTATGACTGTTT 32509 35 100.0 41 ................................... ACCACAGCTTGGCAAACCATGACCATTCATCATTCTTCAGC 32585 35 100.0 37 ................................... GCTCTTCCGTCATACCCTTGCAGGCTTTTTAAGTAAG 32657 35 97.1 44 .......G........................... GTACTTCATAGTTTAGTTATTAAAGCTAATTGTATTTACTTAAT 32736 35 100.0 41 ................................... TTTTGTTTCTTCTCCGCCCAATATCTTGACGACGCTTTCTG 32812 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================ ================== 8 35 99.6 40 CTTTTGAAATGCTCGCCCCGTCAGGGGATGGAAAC # Left flank : TCTTTTGTCACAAGGATCTCAATCTTTTTGACTAGGTATTGTACTTGCGATCAGCTTTACGGGGCAGGAAGCGCCAGCCTTTGGCCGATCGCCGAAGCAATTTTTACTCATAACAGCGGTTTTTGCTGTATGTTGTTCTCAGTTACGGTAATTCATGATCTTCTAAATACAGTTTCCGAGATTTCTAGAATATTAAAAAATATATAGAATGGAGGCCAAGCCTATTATTTTTGATAATATACGGGTTATCTGAACCATGACAATTGAATAAAGTTAACACTCAAGTTTCCCAGCATTTAATAACAGTATTCGGGGGATAGCAACAATCGCTGAAAACCCTATGATTTCGTTGAACCCCGTCGATGCCAGTTCTGGTAAAGGGTTGAGTCCCGATGAGGGTTCGCTTATTGCAATTAATTACTAATTATTTGCCAGTACAAATGTATCCCGCAAAAAACCGTTCAGAAGCCCCTATCTGGAAAGAGGGTTCAGAGAGCAGT # Right flank : CGCTGTGTATCCTTGCTCATTCTGGTAGACACCGACACTTCCTTTCAATACACTTTCCCTGCAAAGGGATGAAAACGTTGCATAATCGTAAGTATAAAAACTTCAAAAAGCCTAGGCTTCAGAAAACAAACGCCACAAGGATTACAGCGATCATTACAAGGATTACAGCGATCGCCAAAGACTAAGAACTTTGATAATTTATCAACCTGAAACAACATAGTAATCCGTGGTTGTCACTTGACAACTACAGGTTTTCAGTATTAGCATTCGTATGTGTATGGAAAAAAACACCCTAATAAAGAGATTCGGGCTGCTTTAGAAGATGCTGAGCAAAAGGGTTGGCGCATTCTACAAGGCGGCTCTCATGCCTGGGGAAAAATCTATTGCCCTTACAACAATTCTGACTGTCGATGTGGAGAATTTTGTAAAACCAGCATCTGGAGTACCCCGAAAAACCCAACTCATCATGCAAGACAAATACGTCGAGTAGTAGATAACTG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTGAAATGCTCGCCCCGTCAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 36184-37317 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALVZ01000180.1 Xenococcus sp. PCC 7305 scaffold_00180, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 36184 35 100.0 43 ................................... CTTTAGCCGCTAGGTTAGTTTGTCGGGCCTGCTCTGCAGCCTC 36262 35 100.0 42 ................................... TTTAGAAGATTCCGCAGGGGCTTCTTCTTCACTTTCATCTTT 36339 35 100.0 40 ................................... ATTTGAATGTTTAACAGCAGGGTATTTAGTGTACCCAAAA 36414 35 100.0 36 ................................... GTAACCAACTCCTCTGCATTGTGTCGGCTCCCCCTG 36485 35 100.0 42 ................................... TTTGAGGGTAGCTATCGAAAGAGCTAGACAATCTTTTTTCGG 36562 35 100.0 35 ................................... ATGTATTAACTCTAAATATAGTGATCTGTCCCTTT 36632 35 100.0 40 ................................... TCTTCACTTGGTACACATATGTATGTTGATCTGTCCCTTT 36707 35 100.0 38 ................................... AATTTGTACGTCACTAATAGGCTTTCCCCTATAATGTT 36780 35 100.0 40 ................................... TTCATCTTCCTGCCTTAAACTTTTTTCGATGTCTAGTAAT 36855 35 100.0 30 ................................... TTTTGCACCGTGATGTATGCCCCCCACTGT Deletion [36920] 36920 35 100.0 40 ................................... ATAAAGGTCTTTTATGTTTGGCTGTAAGCTTAAACATAAA 36995 35 100.0 32 ................................... TCCAGACCTGTTGCATATGACTGCAAGAGATC 37062 35 100.0 42 ................................... CTTAAGCTCCTTTTGCATAAATGCTGTTCTTGCCGCAACCGT 37139 35 100.0 34 ................................... CCAAGAGCCCAGTCATCCGATAAATCATCAGAAA 37208 35 97.1 40 .C................................. CCTGGGTTCCGTTTGCAACATTTATCAGTTTGCCCACAGT 37283 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 16 35 99.8 38 CTTTTGAAACCTTCGCCCCGTCAGGGGATGGAAAC # Left flank : CCACCTAAAAAGATAAATTACTATTCTGTATTTTCTGTGGGGGCGAATGGCCATTCGCCCCTACCACCATGATCTGTCGTGAACATTATTTAATTTGGTATAATTTTTGCTAATAACAGCGGTTTTTGCTGTACGGGGTTCTTGACTACAGTAATTGGTGATATTCTAAGTATAGTTTTTGAAATTTCTATAATATTAAAAAATATATAGAATAGAGGTTAAACTTATTATTTTTGATAATATGTGGGTTATCGGAACCATGACAATTAAATAAAGTTTTCCTCAGATTTTCCAGTATTTAATGACAGTATTCGCGGTATGGCGACAATCGCTGAAACTCCTATTATTTGGTCGAACCCCGTCGATGCCTTTTCTGGCAAGGGATTTGGGCTTTTGGAGAGTGGGCTATTGCCATTAATTCTTAATTATTTGCTAGTGCAAATATATACCGCGAAAAATTCTTCGGTCAGCCTTATCCGGTAAGAGTTGTGGGTTTTTAT # Right flank : CTAATAGAATTAAAATATTGATGTCAAATTGTTTTTGCCGAGATATCCATCAAACCAAATGACAGATCATGCGATCGCATTCCCTGAAAACTCAGAACTAATTGGCTTAGTATTCACCCTCACGCCAGAAAAAGACGGCAGTCTATATCCTGAATACGCCAAAGGTTTACACGCTTGGTTTCTTAACCAAGTACGGGAAGACGATCCGAAACTATCCCAATATCTGCACGATGGACAATCAGAAAAACCTTTTACAATTTCCAGATTAGAAGGAGAAATGACCACTAATGGCAAACAACTATATCTCTCTGCACAAAATACTTATCGTTGGTATCTAACAGCCCTATCTCAACCTGTCGTGATCTGGATGCAACAATGGTTAACCCGTTTACCTAAATTTATCTATCTACAGAAAGTCAAACTACAAATCAAAAAAGTCACAATAACTCACCCCGCAACTACCTACGACAAACTACTCAAAACCAGAAGCGGTAAAAATC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTGAAACCTTCGCCCCGTCAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1490-2042 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALVZ01000089.1 Xenococcus sp. PCC 7305 scaffold_00089, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 1490 35 100.0 40 ................................... GCAAGAGCTACAATAGCTCTGCCCTGGGGATCTTTTGTTG 1565 35 100.0 38 ................................... TATAGGCGTCACCACCTGATAACACGGCCATCCGGATT 1638 35 100.0 38 ................................... TTACGGTAACGCCTGCACTCACAGCATCAATTGTTAAT 1711 35 100.0 40 ................................... TTCAGCCTTTTCACTGTTGACATTTTTCCAAATCTGCATG 1786 35 100.0 36 ................................... AGAGATTGTTTCACTCTCAGAATCGATTTCAACGAT 1857 35 100.0 41 ................................... GAGGAGCGGGGGTCAGTCAGGGAGATAGGCTAAGCTAAATC 1933 35 100.0 40 ................................... CAAATCAGCCATTTTTTTTAACATTGGATATATAGTCCCG 2008 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 8 35 100.0 39 CTTTCCTCTTAGTAGGAAATTAATAGAATGGAAAC # Left flank : ATTCTAGGCATCCTAAGTAGTATCCTTGAGACGAGTAGTAAATTATGGGAATTTTTCGAAATAAAGCTGTTTGTACTGCACCATGAGATAAATGACAGTATCCAAAAAGAATAATATTGGTCACTTCTCTGACAGGAACTTGGAACAAAAGTTTTTTTTGCTGTAAAACCTGAAATTTTTGATGCTGTACTTTGAGATAAGAACCATATTCTAAGACATATATAGTGGCCATATTGGAGAAAAAATAGATGAGAGTAATTTTTAAACATATTTTTCCATCGCAATGGAAGAGGGCTATTCCTAACAGTTTGTGGGGGATATACTCAATCGCTAGAAGCCCGATTATTAGGTTGACCCCCGTCGATGCTTTATGAGGTAAGGGTTTCAGTCGATTCATCTCAAGCTTATTAAGAAGTATTCTTAATTATTCCTATGGTTTGTTTCAGCCCGCGAAAATTCTGTGTACAATCTCTCTATGAGCGTGGTTTTTCAGAAACAGT # Right flank : AAAAATATTGCCATCCCGAATGCTGAGAGCAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCTCTTAGTAGGAAATTAATAGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 14020-14265 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALVZ01000090.1 Xenococcus sp. PCC 7305 scaffold_00090, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 14020 35 100.0 38 ................................... CTGAAGATACCATCAGGAAACGGAACTTCTTCTCCAAG 14093 35 100.0 33 ................................... GCACGTGAAGCGAAGATTAATAATAGAAAAAAA 14161 35 100.0 35 ................................... GATGACCTCCTGTTCATCAAAGGCGTCGCCCACAA 14231 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 4 35 100.0 36 CTTTCCTCTTAGTAGGAAACTAATAGATTGGAAAC # Left flank : TCTTCGGATAACTGAGTCACAAGCACAATCAACCGGTTCCCTCTTTCTGGTAGTCGAGAATATCTTGAATAGTATCATAGAGACAGGTTAGCGACTTCAAGAGCAGCATAATAATATTTGCCATTTAAGCGATGGCCAGTTTGAGGCTCCAACTTTTGAGCTGTAAAATACCAATTTATTATGCTGTGCTTTGAGGTAAAACTACATTTTGCGACGGTAGATAGGGAATATTTTGGAGAGAAAAGGAGGTAATTGTCAATTTTTAAAACATTTTCATATAGCAATCAAATGAAAATATTCCTAATAGTTTGTGGGGAATAGGCTCATTCGCTGGAACATTGATTATTAGGTTGACCTCCGTCGATGCTTTATGTGCCAAAGGTTTTAGCCAATTTATCTCTGACTTATTGAGAAATATTATTAATTATTTCTATGGTTTTTTGTAGCCCGCGAAAAATTTTTGTAAAATCCTCCTATGAGTGCTGTTTTTCAAGAACAGT # Right flank : | # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCTCTTAGTAGGAAACTAATAGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.60,-2.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //