Array 1 2078391-2077718 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906473.1 Corynebacterium cystitidis strain NCTC11863 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 2078390 36 100.0 33 .................................... TCATGTTCCGGCCGAAGCCGGAGGTCTTGTGAA 2078321 36 100.0 34 .................................... CTTACTCCTTTTCTTTTTCGGTAAATCCGGACAG 2078251 36 100.0 36 .................................... TGCATGCAGGATCTCTTCAGATAAATTCGCTTCCTG 2078179 36 100.0 36 .................................... ACTGTCTTCTTTAGCCTGTATACCCCGACTAACGGG 2078107 36 100.0 36 .................................... AGCAGTTGCTGCTAATGTAAGACCCTGCCGCTAGGA 2078035 36 100.0 34 .................................... TTTCCGACGAAAACCCCAGGGTTAATCTTGATGA 2077965 36 100.0 34 .................................... CACGAGCCTTCGGCCAGCGGCGCGAGAGAATCTC 2077895 36 97.2 34 .............C...................... CTGTAGAGAGCGTTAATGTCGGGATCATCGGCCT 2077825 36 97.2 35 ...............................T.... TGACTGACACTTTGCATTAAATACGGCACGCCTTT 2077754 36 94.4 0 ..............................G..T.. | C [2077720] ========== ====== ====== ====== ==================================== ==================================== ================== 10 36 98.9 35 GTCAGTGACGAAGTCTCGCTAAAAGCGAATTGAAAC # Left flank : ATCGGTGGCGTCTACGCTTGGCTGAACAAGACCAAGTATGTCTACAAGGACTAACACGCTCGTTGGGTCGCAGGTGGTGTAGTTATCCACAGGCATGCATGAAGGTTAAACCAAAAGACTTGTGAAGGGTCGTCTTCTAATGTTGAGGGCATCATTATTGGCGCTCATCGACGACATCTGTGACAGGCTGTTGATGCTGAAGCCTTGTTGGTGAGGAACCTGATGGTGGTGTCGCGTGGTTTGTGGTGCTATGTGGTTTGTGGTGTAGCCTTTCGTGGTGGAACCATGGGCTACTGGGTGTGTGCATCACCCCCAGGATGAATATAAATAGCCAATATCCGGTAGCTGGAGGGGCTCATACCCCCCTCTGGTGTGTAGTTCCTTGACCTGCGGTTATGTGGTTTTTGGGTCTTTTGGAGGTGGACTTTAGGTGCGTTTTTGGGCCTGGTGTGTAAACGGTGTCTATTTCCGCTGGACAAAGGGCATAAAAATCGGGTAGG # Right flank : CCGTGCGTCCTGAGTGTGGAAGTCACACTGCAGATTTCTGTGTGTCGCAGCGAATTTTTCCTCCAACACACTCATTTCCATAGTGTGATTTCCACACTCAGCGTTTGTTTGTGGTGGGTGGAGGGGATTTGCGGACTAGGGCAACTTGGGGCCGCAGGCCGTGTGGTTATCCACAGGTGCTCAGTTATCCACAGGTTGAGAGGCACCTGGGCGCGCGTGTCAGCATATTGTTGTACGAATAGGAAGTAGCGGCACCAACTGGTCGTCGTTAAGCACTGAGACCATCGGGGGAACGATGAACACCAATTCCATTGACAAGATTAAGCAACGAGTCCAGAAATTACTCAACCAAGCAGCAGACCGGTCCGGCACACCGGAAGGCGATGTGTTTTACTCCAAAGCCTTCGACCTCATGGCCACTTACGGTTTTGATGAGCGGGATCTCAGCCAGGCCGACGATGGCGATGCCATTGCGATGGAGGAAATCGAGTTGAGCGGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGTGACGAAGTCTCGCTAAAAGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 2642238-2645354 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906473.1 Corynebacterium cystitidis strain NCTC11863 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2642238 36 100.0 37 .................................... GGGCAGGTTAGATGGGCCTGGGGCGCAGTCGCATGGT 2642311 36 100.0 35 .................................... GTTATTGACGGCAACACCATCTCTTTTACCGAAGT 2642382 36 100.0 35 .................................... GGGATCTTCCACATCTTCCGGCCAATTCACATCAC 2642453 36 100.0 35 .................................... CCCAGCTCCCCAGATGGAGGAAGTGGCAAGTGCGC 2642524 36 100.0 37 .................................... CCCATATCAGCAGTGCATGCACCATTTCGCGGTCAAA 2642597 36 100.0 35 .................................... TTTTCAGCAGGTTCTGGTTTCGAAGCGCAATCGGG 2642668 36 100.0 37 .................................... GAAGACTGTAATTCACACAGGCAGGGAAAACCACATG 2642741 36 100.0 37 .................................... TGTCTCGAACAACCGGGGACGCCTTCGCTACCGGAGT 2642814 36 100.0 35 .................................... GCCAGACGATCGCTGACGGCGACAGGTACGTGGCG 2642885 36 100.0 35 .................................... CTCAAGTGTGGGCATGGACGAGGTTTATCTCTTGG 2642956 36 100.0 34 .................................... CCTGCAGGCCTTGCGGGCCGGGCGGCCCCGCTGG 2643026 36 100.0 37 .................................... GAGATCATCCTTCGATTCGCCGGGGTGTGGAACCAAC 2643099 36 100.0 37 .................................... CCGCGTGGCCTATGAGCGATGGAGAGTCGAAGACGAT 2643172 36 100.0 36 .................................... AGACACCCGTGACCATTTATGTGACTCCTCTGACCA 2643244 36 100.0 36 .................................... CGTTCACGCACAAACCCGCTACGCGCGTGTCCCTGG 2643316 36 100.0 35 .................................... ATTTCGTACGTTTCCGGCGCGTAGACCTCCCCAGC 2643387 36 100.0 35 .................................... CAGGGAATACGCCCCTCCTGGTCCCCCCAGCCGTT 2643458 36 100.0 36 .................................... AACGGCAGCCACCTCCAACTACCCGGACTCGGCAAC 2643530 36 100.0 35 .................................... AGTGCGGAAGACCTTGAAAAGCTCAACGGAAAGCT 2643601 36 100.0 37 .................................... CACGAACTTACCCATAGATTTGACTCGCGGTTTGATC 2643674 36 100.0 36 .................................... TGCGTTGACCGCAGCGATTATGATCGAAGCCGAAGC 2643746 36 100.0 35 .................................... TCGAAAATCTGCAGGAGGCGGTTGGTGACGAGCTG 2643817 36 100.0 33 .................................... CTAGAACGAGCCGTCACACGCGCCGGGCTGGGA 2643886 36 100.0 35 .................................... TAGTAGCGCGTCGAGTTTTTGGAGCGCGGGGATAA 2643957 36 100.0 35 .................................... GTCAGCAAGTCAGTGACATGCTACCCGTGGTTGAG 2644028 36 100.0 35 .................................... TCGAAGTGGTCGAAGATGGGACTGCGTGCGCCTAA 2644099 36 100.0 36 .................................... CAGGTAGGAGGGGTGCGGTTCACGTCCAGGGCTTCC 2644171 36 100.0 34 .................................... TGGTGCAAGAAAGTCGCGGCTGGCGTTGTGTTGC 2644241 36 100.0 34 .................................... TGGTGCAAGAAAGTCGCGGCTGGCGTTGTGTTGC 2644311 36 100.0 36 .................................... CCCAACGTCGAGCCACTATGGGCCGACAAGAAAACA 2644383 36 100.0 34 .................................... GTCCCACCGCGACAGGTTCGCCCCGGCTAGCTCG 2644453 36 100.0 36 .................................... TTCTTGGATTTTGTCTCGGTCGATGATGACCCTTTG 2644525 36 100.0 36 .................................... CAGGTAGGAGGGGTGCGGTTCACGTCCAGGGCTTCC 2644597 36 100.0 37 .................................... TTTCGTCAATTGTGACGTTTCTTGCAAGTGCAGCAAC 2644670 36 100.0 37 .................................... CCACCCGATCACAACCCCGGTGGAGATTCGTAAGGAG 2644743 36 100.0 38 .................................... ACTGACGTGACTGGCACGTCTGCGCATACCTGGATGGG 2644817 36 100.0 36 .................................... GGGAACAGGCCTACCGGCGCGCGTCAGCGATTCATC 2644889 36 100.0 35 .................................... GCGCCTCGAGCCCATCAAGTGCCCGGGTCGCCGCA 2644960 36 100.0 38 .................................... ACTGACGTGACTGGCACGTCTGCGCATACCTGGATGGG 2645034 36 100.0 34 .................................... AACTCACTCGGCTACCATTCATGGTTCATGTCAC 2645104 36 100.0 36 .................................... CAGGTAGGAGGGGTGCGGTTCACGTCCAGGGCTTCC 2645176 36 100.0 36 .................................... CAGGTAGGAGGGGTGCGGTTCACGTCCAGGGCTTCC 2645248 36 100.0 35 .................................... TTCACAGCAGTTGATGATCTTGCGCCGGAAGATAA 2645319 35 91.7 0 ..T...........-................A.... | C [2645329] ========== ====== ====== ====== ==================================== ====================================== ================== 44 36 99.8 36 GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC # Left flank : ATAGTGAGGGACGATCTTCGACGAACTTTGGTCGCGTACGATATTCCACATGACCGTCGCCGTACAAAAGCTGCCCAAACATTGTTGACCTACGGAGACCGAGTACAATATAGCGTGTTCATCGTCGACTGCATCCCCGCTCAGCTGCTGCGGCTCAAGGAGCAACTGCGGGAAATCATCAATACGGATGAAGACTCCGTGTTATTTTGCGATATCGGTTTGGTGGCAACTCTTCAAAAGACGAATTATTCTTACTTGGGGTTAGAACCTAAGTTAACTAGCGACGGGCCCCTGATCTTCTGACTTGAGCCCCAAGCATATTGATGCGAGAGCCACACGATTGCAATTGAGTGCGGCACGCGCTCGCAGCTTAAAACAGCTGGTTACGCGCTGGATTTGCGATTTTCCACATCACTGATGTGCCAAAAACTCACCAAATTCTGCTTGCACTCGCAACTACCGACATATACGCTGGAAGCGCCCCTATTTTATTCGGTGCT # Right flank : CAACGATGAAGTTGAAGCGTCATCGCTGTACGTGTTCGCGCACAGCGCGCCTGCGCCACCAGCACAGGGTGGTTGGCAGGCAGACGCGCAAGCGGTCCCGGTCGGTCTTAGGCTGCAGCCGCAGCTTGTTGGTCTTCCTCCTCTACCCGTGCGGGAGAAGGGATCAGGAAGGAAGCCACCAAAGCTAGCACGATAATAATCGCACCGGTGAGCATTCCTGCCTGGTAACCTGCAGCTTCGCCTTGAGCTGCTCCCACAGTGGTGTTAACCATGAACAGCAAGGCGAAAGATAGTCCTGCACCGATGTTGAAAGCGCCAGAGTTCATCCCGGGCAGATAGCCCTGGTTATCTTTCGGCGAAAGCACAACACCTAAGCCGTTGAGCATGATGTTGCACACACCGGCGTAAGAGATACCAATCCACAGTGACACGATCAGCAATGTGATTGGCGTGGTATTAGTAACCACATACATGGCAAAGAAGATGCCCAACAACGTGAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //