Array 1 183210-182332 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MSPX01000004.1 Rhizobium rhizosphaerae strain RD15 contig_4, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	===============================	====================================	==================
    183209	    31	 100.0	    36	...............................	TCAACGTGCTGCGCGAACATCCGCAGCCGGTCACTG	
    183142	    31	 100.0	    32	...............................	TCCCCGATCAGATCGTCTACGCCTCCTTGCAG    	
    183079	    31	 100.0	    35	...............................	TATCACTATTTCAACGGTGCCGGTAGCGCTCGCGT 	
    183013	    31	 100.0	    36	...............................	TGGATACTGCCCCGAAATTTCGAGGCCGATAAACTC	
    182946	    31	 100.0	    35	...............................	ACGGGTGTCCGACGCTTGTTGTGCGCCACGCGCTC 	
    182880	    31	 100.0	    32	...............................	CTTGCGCTCCGGCTTAAAGACCATGCCGATCG    	
    182817	    31	 100.0	    35	...............................	ATCATCCATTGGGTCAACAGCACCGCTGGCCGGAT 	
    182751	    31	 100.0	    34	...............................	GGGGGCGTCGATGCCGCTGAAGCGGATGCGCTGG  	
    182686	    31	 100.0	    35	...............................	AACGCGATGGTTGCGGAGAAAACCCGCACCATCAA 	
    182620	    30	  93.5	    33	...........G.....-.............	TCCTTGTCTGTTGCGGTCGCCGCCTGCAGGGCC   	
    182557	    31	 100.0	    35	...............................	AACTACCCCGCGACGGATTACACCGACGCGGAAGC 	
    182491	    31	  96.8	    34	..................T............	AACCCAATGGACCTCTACCTCCAACCTATGGGTG  	
    182426	    31	  90.3	    33	A......G........A..............	ATGTTGGCATTGTACAGGCCGCCGCCGAACTGG   	
    182362	    31	  96.8	     0	.............................G.	|                                   	
==========	======	======	======	===============================	====================================	==================
        14	    31	  98.4	    34	GTCGCCTCCTTACGGGGGCGTGGATTGAAAC	                                    	       

# Left flank :   GCGCCCCTGACCTGCAGAAGCTTGAGAATGCCGATGCGCACGGGCGCGGCTAGCGCCTTGAGCAGAAGCGGATTTTCCAGGGGATCGACGAGAAGGAAATGGCGGCTCATGAAGACCTGATGCGGTGAGCATGGCCGGCCCAAGACGTGACGCTTCGGCGGCGGACATGGGAGAAAACAAAGCGCGGCGCCCGTCAAGGCCGATCCGATCCACCGGACGGGCTCCGGTGGGTCGTTATTCGTATCACCTTTCCTGATCCAATCAACCGCCACGTTTCCCTGGCATCAGCGGCCCATGCCGCTTCCCGTTTCACGCCGGCCGGTGCGAACCCCAAGCGTGCCGCACTATGCCGGGAGGTTCGCACTGCGCCTATCTCGCTGAATTTGCACGCGGGGGAAGAAGAATGGGCAGCCTCGGACGGGGCGGTCTGCGGCAAAGCGGACGCTTTCGCGCGCAGCGCGGATTTGTCACAGCGATTTTCGCGGGTTATCCTTGGGACG
# Right flank :  TGGAAATTGTATCCGATCTGTTAGCCGTGCATTGTCGCCCCTTCACAAGCGCCTGACTAAAACGTCGGTGCGCGTTTGGAGCGGTCGGCGAAGTTCGCCACCTCCTCCAGGAGGAAACGGTTGGACCGGTAAGGGGGCCATGGTCGGCCGTGGCCCCTCATCACCCAATCAACAGCCGCGCCCCCAGCGCTGCCGCCAGCGCCGTCGGCATCGCCACCGCGCCGACCTTGAGGAAGCGCCAGAAGCCGACATCCTCGCCTTCGCGGCGGATGGCCTGGAGCCAGAGGATGGTGGCGAGCGAGCCTGTTACCGAGAGGTTCGGCCCAAGATCGACCGCAATCAGCAGGCTGTCGATGACGAGGCGCGGCGGGGCGGCCTGTTCCACGGCGAGGCTGGTGATGAGGCCGGCGGGCAGGTTGTTGATGAGGTTCGAGCCGAAGGCCAGGACCGTGCCGGAGACCGCGCCGAGCGTGACCGGATCCACCCCCGGCCGGGACAGA

# Questionable array : NO	 Score: 9.18
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCCTCCTTACGGGGGCGTGGATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [7,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-2.40,-4.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [7-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.64,9.78   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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