Array 1 3764-4158 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MZAV01000180.1 Salmonella enterica subsp. houtenae serovar 50:z4,z23:- strain 2009K0371 NODE_180_length_4694_cov_3.84699, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
      3764	    29	 100.0	    32	.............................	AGGGCTCAATTATTCTGGTTTCTCAAATGTTC	
      3825	    29	 100.0	    32	.............................	TAACTTGTCCCGGGTAATGATGGTCCAGCACT	
      3886	    29	 100.0	    32	.............................	ACCTCGACGACCCGGCAGGCGAGAGCAAACAG	
      3947	    29	 100.0	    32	.............................	CACAATGGCGCGGAATGTTTTCTGCAACTTCA	
      4008	    29	 100.0	    32	.............................	CGAATTCTGAGATAATGAGCGTTTATCACGCC	
      4069	    29	  89.7	    32	A...............T...........A	GAATGGCGCTAGTTCGTCATATCAATGTGAAT	
      4130	    29	  89.7	     0	............T..............GT	|                               	
==========	======	======	======	=============================	================================	==================
         7	    29	  97.1	    32	GAGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   CTGATTGAAGAGGTCCTTGCCGCCGGAGAAATCCAGCCGCCGTCTCCTCCTGAAGATGCGCAGCCCATTGCGATTCCACTTCCTGTTTCTCTGGGAGATTCAGGCCATCGGAGTAGCTAACGATGAGTATGTTGGTTGTTGTGACGGAAAATGTACCGCCACGTCTGCGAGGCAGGCTGGCCGTCTGGTTACTGGAAATTCGCGCTGGTGTTTATGTTGGCGATGTTTCAACAAAGATCCGCGAGATGATATGGCAGCAGATCTCCATTCTGGCAGCGGGAGGGAATGTTGTGATGGCATGGGCGACGAACACTGAATCAGGGTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTGGATCTTGATGGATTGCGATTAGTGTCTTTTCTGCCTGTTGTAAATCAATAAGTTAGCGATCTTTAAAAATACGGAAAAGTTGGTAGATTTTGGTATGCTAAAAAAAGCATTTTAATTCAGTTGGGTATATTTAGA
# Right flank :  TTTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCATGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC

# Questionable array : NO	 Score: 6.11
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [6,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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